APEnet+: high bandwidth 3D torus direct network for petaflops scale commodity clusters

We describe herein the APElink+ board, a PCIe interconnect adapter featuring the latest advances in wire speed and interface technology plus hardware support for a RDMA programming model and experimental acceleration of GPU networking; this design allows us to build a low latency, high bandwidth PC cluster, the APEnet+ network, the new generation of our cost-effective, tens-of-thousands-scalable cluster network architecture. Some test results and characterization of data transmission of a complete testbench, based on a commercial development card mounting an Altera FPGA, are provided.Comment: 6 pages, 7 figures, proceeding of CHEP 2010, Taiwan, October 18-2

RISC-V-Based Platforms for HPC: Analyzing Non-functional Properties for Future HPC and Big-Data Clusters

High-Performance Computing (HPC) have evolved to be used to perform simulations of systems where physical experimentation is prohibitively impractical, expensive, or dangerous. This paper provides a general overview and showcases the analysis of non-functional properties in RISC-V-based platforms for HPCs. In particular, our analyses target the evaluation of power and energy control, thermal management, and reliability assessment of promising systems, structures, and technologies devised for current and future generation of HPC machines. The main set of design methodologies and technologies developed within the activities of the Future and HPC & Big Data spoke of the National Centre of HPC, Big Data and Quantum Computing project are described along with the description of the testbed for experimenting two-phase cooling approaches

Finite Element Integration on GPUs

We present a novel finite element integration method for low order elements on GPUs. We achieve more than 100GF for element integration on first order discretizations of both the Laplacian and Elasticity operators.Comment: 16 pages, 3 figure

A Survey on Vertical and Horizontal Scaling Platforms for Big Data Analytics

There is no doubt that we are entering the era of big data. The challenge is on how to store, search, and analyze the huge amount of data that is being generated per second. One of the main obstacles to the big data researchers is how to find the appropriate big data analysis platform. The basic aim of this work is to present a complete investigation of all the available platforms for big data analysis in terms of vertical and horizontal scaling, and its compatible framework and applications in detail. Finally, this article will outline some research trends and other open issues in big data analytic

Distributed Computing in a Pandemic: A Review of Technologies Available for Tackling COVID-19

The current COVID-19 global pandemic caused by the SARS-CoV-2 betacoronavirus has resulted in over a million deaths and is having a grave socio-economic impact, hence there is an urgency to find solutions to key research challenges. Much of this COVID-19 research depends on distributed computing. In this article, I review distributed architectures -- various types of clusters, grids and clouds -- that can be leveraged to perform these tasks at scale, at high-throughput, with a high degree of parallelism, and which can also be used to work collaboratively. High-performance computing (HPC) clusters will be used to carry out much of this work. Several bigdata processing tasks used in reducing the spread of SARS-CoV-2 require high-throughput approaches, and a variety of tools, which Hadoop and Spark offer, even using commodity hardware. Extremely large-scale COVID-19 research has also utilised some of the world's fastest supercomputers, such as IBM's SUMMIT -- for ensemble docking high-throughput screening against SARS-CoV-2 targets for drug-repurposing, and high-throughput gene analysis -- and Sentinel, an XPE-Cray based system used to explore natural products. Grid computing has facilitated the formation of the world's first Exascale grid computer. This has accelerated COVID-19 research in molecular dynamics simulations of SARS-CoV-2 spike protein interactions through massively-parallel computation and was performed with over 1 million volunteer computing devices using the Folding@home platform. Grids and clouds both can also be used for international collaboration by enabling access to important datasets and providing services that allow researchers to focus on research rather than on time-consuming data-management tasks.Comment: 21 pages (15 excl. refs), 2 figures, 3 table

ParaDox: Eliminating Voltage Margins via Heterogeneous Fault Tolerance.

Providing reliability is becoming a challenge for chip manufacturers, faced with simultaneously trying to improve miniaturization, performance and energy efficiency. This leads to very large margins on voltage and frequency, designed to avoid errors even in the worst case, along with significant hardware expenditure on eliminating voltage spikes and other forms of transient error, causing considerable inefficiency in power consumption and performance. We flip traditional ideas about reliability and performance around, by exploring the use of error resilience for power and performance gains. ParaMedic is a recent architecture that provides a solution for reliability with low overheads via automatic hardware error recovery. It works by splitting up checking onto many small cores in a heterogeneous multicore system with hardware logging support. However, its design is based on the idea that errors are exceptional. We transform ParaMedic into ParaDox, which shows high performance in both error-intensive and scarce-error scenarios, thus allowing correct execution even when undervolted and overclocked. Evaluation within error-intensive simulation environments confirms the error resilience of ParaDox and the low associated recovery cost. We estimate that compared to a non-resilient system with margins, ParaDox can reduce energy-delay product by 15% through undervolting, while completely recovering from any induced errors