Continuously Providing Approximate Results under Limited Resources: Load Shedding and Spilling in XML Streams

Because of the high volume and unpredictable arrival rates, stream processing systems may not always be able to keep up with the input data streams, resulting in buffer overflow and uncontrolled loss of data. To continuously supply online results, two alternate solutions to tackle this problem of unpredictable failures of such overloaded systems can be identified. One technique, called load shedding, drops some fractions of data from the input stream to reduce the memory and CPU requirements of the workload. However, dropping some portions of the input data means that the accuracy of the output is reduced since some data is lost. To produce eventually complete results, the second technique, called data spilling, pushes some fractions of data to persistent storage temporarily when the processing speed cannot keep up with the arrival rate. The processing of the disk resident data is then postponed until a later time when system resources become available. This dissertation explores these load reduction technologies in the context of XML stream systems. Load shedding in the specific context of XML streams poses several unique opportunities and challenges. Since XML data is hierarchical, subelements, extracted from different positions of the XML tree structure, may vary in their importance. Further, dropping different subelements may vary in their savings of storage and computation. Hence, unlike prior work in the literature that drops data completely or not at all, in this dissertation we introduce the notion of structure-oriented load shedding, meaning selectively some XML subelements are shed from the possibly complex XML objects in the XML stream. First we develop a preference model that enables users to specify the relative importance of preserving different subelements within the XML result structure. This transforms shedding into the problem of rewriting the user query into shed queries that return approximate answers with their utility as measured by the user preference model. Our optimizer finds the appropriate shed queries to maximize the output utility driven by our structure-based preference model under the limitation of available computation resources. The experimental results demonstrate that our proposed XML-specific shedding solution consistently achieves higher utility results compared to the existing relational shedding techniques. Second, we introduces structure-based spilling, a spilling technique customized for XML streams by considering the spilling of partial substructures of possibly complex XML elements. Several new challenges caused by structure-based spilling are addressed. When a path is spilled, multiple other paths may be affected. We categorize varying types of spilling side effects on the query caused by spilling. How to execute the reduced query to produce the correct runtime output is also studied. Three optimization strategies are developed to select the reduced query that maximizes the output quality. We also examine the clean-up stage to guarantee that an entire result set is eventually generated by producing supplementary results to complement the partial results output earlier. The experimental study demonstrates that our proposed solutions consistently achieve higher quality results compared to the state-of-the-art techniques. Third, we design an integrated framework that combines both shedding and spilling policies into one comprehensive methodology. Decisions on the choice of whether to shed or spill data may be affected by the application needs and data arrival patterns. For some input data, it may be worth to flush it to disk if a delayed output of its result will be important, while other data would best directly dropped from the system given that a delayed delivery of these results would no longer be meaningful to the application. Therefore we need sophisticated technologies capable of deploying both shedding and spilling techniques within one integrated strategy with the ability to deliver the most appropriate decision customers need for each specific circumstance. We propose a novel flexible framework for structure-based shed and spill approaches, applicable in any XML stream system. We propose a solution space that represents all the shed and spill candidates. An age-based quality model is proposed for evaluating the output quality for different reduced query and supplementary query pairs. We also propose a family of four optimization strategies, OptF, OptSmart, HiX and Fex. OptF and OptSmart are both guaranteed to identify an optimal solution of reduced and supplementary query pair, with OptSmart exhibiting significantly less overhead than OptF. HiX and Fex use heuristic-based approaches that are much more efficient than OptF and OptSmart

Managing big data experiments on smartphones

The explosive number of smartphones with ever growing sensing and computing capabilities have brought a paradigm shift to many traditional domains of the computing field. Re-programming smartphones and instrumenting them for application testing and data gathering at scale is currently a tedious and time-consuming process that poses significant logistical challenges. Next generation smartphone applications are expected to be much larger-scale and complex, demanding that these undergo evaluation and testing under different real-world datasets, devices and conditions. In this paper, we present an architecture for managing such large-scale data management experiments on real smartphones. We particularly present the building blocks of our architecture that encompassed smartphone sensor data collected by the crowd and organized in our big data repository. The given datasets can then be replayed on our testbed comprising of real and simulated smartphones accessible to developers through a web-based interface. We present the applicability of our architecture through a case study that involves the evaluation of individual components that are part of a complex indoor positioning system for smartphones, coined Anyplace, which we have developed over the years. The given study shows how our architecture allows us to derive novel insights into the performance of our algorithms and applications, by simplifying the management of large-scale data on smartphones

Bulk Insertions into xBR+ -trees

Bulk insertion refers to the process of updating an existing index by inserting a large batch of new data, treating the items of this batch as a whole and not by inserting these items one-by-one. Bulk insertion is related to bulk loading, which refers to the process of creating a non-existing index from scratch, when the dataset to be indexed is available beforehand. The xBR + -tree is a balanced, disk-resident, Quadtree-based index for point data, which is very efficient for processing spatial queries. In this paper, we present the first algorithm for bulk insertion into xBR+ -trees. This algorithm incorporates extensions of techniques that we have recently developed for bulk loading xBR+ -trees. Moreover, using real and artificial datasets of various cardinalities, we present an experimental comparison of this algorithm vs. inserting items one-by-one for updating xBR+ -trees, regarding performance (I/O and execution time) and the characteristics of the resulting trees. We also present experimental results regarding the query-processing efficiency of xBR+ -trees built by bulk insertions vs. xBR+ -trees built by inserting items one-by-one

Efficient & Effective Selective Query Rewriting with Efficiency Predictions

To enhance effectiveness, a user's query can be rewritten internally by the search engine in many ways, for example by applying proximity, or by expanding the query with related terms. However, approaches that benefit effectiveness often have a negative impact on efficiency, which has impacts upon the user satisfaction, if the query is excessively slow. In this paper, we propose a novel framework for using the predicted execution time of various query rewritings to select between alternatives on a per-query basis, in a manner that ensures both effectiveness and efficiency. In particular, we propose the prediction of the execution time of ephemeral (e.g., proximity) posting lists generated from uni-gram inverted index posting lists, which are used in establishing the permissible query rewriting alternatives that may execute in the allowed time. Experiments examining both the effectiveness and efficiency of the proposed approach demonstrate that a 49% decrease in mean response time (and 62% decrease in 95th-percentile response time) can be attained without significantly hindering the effectiveness of the search engine

Bridging the gap between algorithmic and learned index structures

Index structures such as B-trees and bloom filters are the well-established petrol engines of database systems. However, these structures do not fully exploit patterns in data distribution. To address this, researchers have suggested using machine learning models as electric engines that can entirely replace index structures. Such a paradigm shift in data system design, however, opens many unsolved design challenges. More research is needed to understand the theoretical guarantees and design efficient support for insertion and deletion. In this thesis, we adopt a different position: index algorithms are good enough, and instead of going back to the drawing board to fit data systems with learned models, we should develop lightweight hybrid engines that build on the benefits of both algorithmic and learned index structures. The indexes that we suggest provide the theoretical performance guarantees and updatability of algorithmic indexes while using position prediction models to leverage the data distributions and thereby improve the performance of the index structure. We investigate the potential for minimal modifications to algorithmic indexes such that they can leverage data distribution similar to how learned indexes work. In this regard, we propose and explore the use of helping models that boost classical index performance using techniques from machine learning. Our suggested approach inherits performance guarantees from its algorithmic baseline index, but at the same time it considers the data distribution to improve performance considerably. We study single-dimensional range indexes, spatial indexes, and stream indexing, and show that the suggested approach results in range indexes that outperform the algorithmic indexes and have comparable performance to the read-only, fully learned indexes and hence can be reliably used as a default index structure in a database engine. Besides, we consider the updatability of the indexes and suggest solutions for updating the index, notably when the data distribution drastically changes over time (e.g., for indexing data streams). In particular, we propose a specific learning-augmented index for indexing a sliding window with timestamps in a data stream. Additionally, we highlight the limitations of learned indexes for low-latency lookup on real- world data distributions. To tackle this issue, we suggest adding an algorithmic enhancement layer to a learned model to correct the prediction error with a small memory latency. This approach enables efficient modelling of the data distribution and resolves the local biases of a learned model at the cost of roughly one memory lookup.Open Acces

Complex Query Operators on Modern Parallel Architectures

Identifying interesting objects from a large data collection is a fundamental problem for multi-criteria decision making applications.In Relational Database Management Systems (RDBMS), the most popular complex query operators used to solve this type of problem are the Top-K selection operator and the Skyline operator.Top-K selection is tasked with retrieving the k-highest ranking tuples from a given relation, as determined by a user-defined aggregation function.Skyline selection retrieves those tuples with attributes offering (pareto) optimal trade-offs in a given relation.Efficient Top-K query processing entails minimizing tuple evaluations by utilizing elaborate processing schemes combined with sophisticated data structures that enable early termination.Skyline query evaluation involves supporting processing strategies which are geared towards early termination and incomparable tuple pruning.The rapid increase in memory capacity and decreasing costs have been the main drivers behind the development of main-memory database systems.Although the act of migrating query processing in-memory has created many opportunities to improve the associated query latency, attaining such improvements has been very challenging due to the growing gap between processor and main memory speeds.Addressing this limitation has been made easier by the rapid proliferation of multi-core and many-core architectures.However, their utilization in real systems has been hindered by the lack of suitable parallel algorithms that focus on algorithmic efficiency.In this thesis, we study in depth the Top-K and Skyline selection operators, in the context of emerging parallel architectures.Our ultimate goal is to provide practical guidelines for developing work-efficient algorithms suitable for parallel main memory processing.We concentrate on multi-core (CPU), many-core (GPU), and processing-in-memory architectures (PIM), developing solutions optimized for high throughout and low latency.The first part of this thesis focuses on Top-K selection, presenting the specific details of early termination algorithms that we developed specifically for parallel architectures and various types of accelerators (i.e. GPU, PIM).The second part of this thesis, concentrates on Skyline selection and the development of a massively parallel load balanced algorithm for PIM architectures.Our work consolidates performance results across different parallel architectures using synthetic and real data on variable query parameters and distributions for both of the aforementioned problems.The experimental results demonstrate several orders of magnitude better throughput and query latency, thus validating the effectiveness of our proposed solutions for the Top-K and Skyline selection operators

SNPpy - Database Management for SNP Data from Genome Wide Association Studies

Background: We describe SNPpy, a hybrid script database system using the Python SQLAlchemy library coupled with the PostgreSQL database to manage genotype data from Genome-Wide Association Studies (GWAS). This system makes it possible to merge study data with HapMap data and merge across studies for meta-analyses, including data filtering based on the values of phenotype and Single-Nucleotide Polymorphism (SNP) data. SNPpy and its dependencies are open source software. Results: The current version of SNPpy offers utility functions to import genotype and annotation data from two commercial platforms. We use these to import data from two GWAS studies and the HapMap Project. We then export these individual datasets to standard data format files that can be imported into statistical software for downstream analyses. Conclusions: By leveraging the power of relational databases, SNPpy offers integrated management and manipulation of genotype and phenotype data from GWAS studies. The analysis of these studies requires merging across GWAS datasets as well as patient and marker selection. To this end, SNPpy enables the user to filter the data and output the results as standardized GWAS file formats. It does low level and flexible data validation, including validation of patient data. SNPpy is