1,018 research outputs found
Euclidean distance geometry and applications
Euclidean distance geometry is the study of Euclidean geometry based on the
concept of distance. This is useful in several applications where the input
data consists of an incomplete set of distances, and the output is a set of
points in Euclidean space that realizes the given distances. We survey some of
the theory of Euclidean distance geometry and some of the most important
applications: molecular conformation, localization of sensor networks and
statics.Comment: 64 pages, 21 figure
Branch-and-Prune Search Strategies for Numerical Constraint Solving
When solving numerical constraints such as nonlinear equations and
inequalities, solvers often exploit pruning techniques, which remove redundant
value combinations from the domains of variables, at pruning steps. To find the
complete solution set, most of these solvers alternate the pruning steps with
branching steps, which split each problem into subproblems. This forms the
so-called branch-and-prune framework, well known among the approaches for
solving numerical constraints. The basic branch-and-prune search strategy that
uses domain bisections in place of the branching steps is called the bisection
search. In general, the bisection search works well in case (i) the solutions
are isolated, but it can be improved further in case (ii) there are continuums
of solutions (this often occurs when inequalities are involved). In this paper,
we propose a new branch-and-prune search strategy along with several variants,
which not only allow yielding better branching decisions in the latter case,
but also work as well as the bisection search does in the former case. These
new search algorithms enable us to employ various pruning techniques in the
construction of inner and outer approximations of the solution set. Our
experiments show that these algorithms speed up the solving process often by
one order of magnitude or more when solving problems with continuums of
solutions, while keeping the same performance as the bisection search when the
solutions are isolated.Comment: 43 pages, 11 figure
Probabilistic constraint reasoning with Monte Carlo integration to robot localization
This work studies the combination of safe and probabilistic reasoning through the hybridization of Monte Carlo integration techniques with continuous constraint programming. In continuous constraint programming there are variables ranging over continuous domains (represented as intervals) together with constraints over them (relations between variables) and the goal is to find values for those variables that satisfy all the constraints (consistent scenarios). Constraint programming “branch-and-prune” algorithms produce safe enclosures of all consistent scenarios. Special proposed algorithms for probabilistic constraint reasoning compute the probability of sets of consistent scenarios which imply the calculation of an integral over these sets (quadrature). In this work we propose to extend the “branch-and-prune” algorithms with Monte Carlo integration techniques to compute such probabilities. This approach can be useful in robotics for localization problems. Traditional approaches are based on probabilistic techniques that search the most likely scenario, which may not satisfy the model constraints. We show how to apply our approach in order to cope with this problem and provide functionality in real time
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints
International audienceBackground: The determination of protein structures satisfying distance constraints is an important problem in structural biology. Whereas the most common method currently employed is simulated annealing, there have been other methods previously proposed in the literature. Most of them, however, are designed to find one solution only. Results: In order to explore exhaustively the feasible conformational space, we propose here an interval Branch-and-Prune algorithm (iBP) to solve the Distance Geometry Problem (DGP) associated to protein structure determination. This algorithm is based on a discretization of the problem obtained by recursively constructing a search space having the structure of a tree, and by verifying whether the generated atomic positions are feasible or not by making use of pruning devices. The pruning devices used here are directly related to features of protein conformations. Conclusions: We described the new algorithm iBP to generate protein conformations satisfying distance constraints, that would potentially allows a systematic exploration of the conformational space. The algorithm iBP has been applied on three α-helical peptides
Improved Bernstein Optimization Based Nonlinear Model Predictive Control Scheme for Power Systems
© 2017 This paper presents a improved Bernstein global optimization algorithm based model predictive control (MPC) scheme for the nonlinear systems. A new improvement in the Bernstein algorithm is the introduction of a box pruning operator, which during a branch-and-bound search, discard portions of the solution search space that do not contain global solution, thereby speeding up the algorithm. The applicability of this MPC scheme is demonstrated with a simulation studies on a nonlinear single machine infinite bus power system over a wide range of operating conditions. The simulation results show improvement in the system damping and settling time compared with the classical power system stabilizer and partial feedback linearization control schemes.National Research Foundation, Singapore
Constraint reasoning for differential models
The basic motivation of this work was the integration of biophysical models within the interval constraints framework for decision support. Comparing the major features of biophysical models with the expressive power of the existing interval constraints framework, it was clear that the most important inadequacy was related with the representation of differential equations. System dynamics is often modelled through differential equations but there was no way of expressing a differential equation as a constraint and integrate it within the constraints framework. Consequently, the goal of this work is focussed on the integration of ordinary differential equations within the interval constraints framework, which for this purpose is extended with the new formalism of Constraint Satisfaction Differential Problems. Such framework allows the specification of ordinary differential equations, together with related information, by means of constraints, and provides efficient propagation techniques for pruning the domains of their variables. This enabled the integration of all such information in a single constraint whose variables may subsequently be used in other constraints of the model. The specific method used for pruning its variable domains can then be combined with the pruning methods associated with the other constraints in an overall propagation algorithm for reducing the bounds of all model variables. The application of the constraint propagation algorithm for pruning the variable domains, that is, the enforcement of local-consistency, turned out to be insufficient to support decision in practical problems that include differential equations. The domain pruning achieved is not, in general, sufficient to allow safe decisions and the main reason derives from the non-linearity of the differential equations. Consequently, a complementary goal of this work proposes a new strong consistency criterion, Global Hull-consistency, particularly suited to decision support with differential models, by presenting an adequate trade-of between domain pruning and computational effort. Several alternative algorithms are proposed for enforcing Global Hull-consistency and, due to their complexity, an effort was made to provide implementations able to supply any-time pruning results. Since the consistency criterion is dependent on the existence of canonical solutions, it is proposed a local search approach that can be integrated with constraint propagation in continuous domains and, in particular, with the enforcing algorithms for anticipating the finding of canonical solutions. The last goal of this work is the validation of the approach as an important contribution for the integration of biophysical models within decision support. Consequently, a prototype application that integrated all the proposed extensions to the interval constraints framework is developed and used for solving problems in different biophysical domains
A GPU-accelerated Branch-and-Bound Algorithm for the Flow-Shop Scheduling Problem
Branch-and-Bound (B&B) algorithms are time intensive tree-based exploration
methods for solving to optimality combinatorial optimization problems. In this
paper, we investigate the use of GPU computing as a major complementary way to
speed up those methods. The focus is put on the bounding mechanism of B&B
algorithms, which is the most time consuming part of their exploration process.
We propose a parallel B&B algorithm based on a GPU-accelerated bounding model.
The proposed approach concentrate on optimizing data access management to
further improve the performance of the bounding mechanism which uses large and
intermediate data sets that do not completely fit in GPU memory. Extensive
experiments of the contribution have been carried out on well known FSP
benchmarks using an Nvidia Tesla C2050 GPU card. We compared the obtained
performances to a single and a multithreaded CPU-based execution. Accelerations
up to x100 are achieved for large problem instances
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