Computing Near-Optimal Solutions to the Steiner Problem in a Graph Using a Genetic Algorithm

A new Genetic Algorithm (GA) for the Steiner Problem in a Graph (SPG) is presented. The algorithm is based on a bitstring encoding. A bitstring specifies selected Steiner vertices and the corresponding Steiner tree is computed using the Distance Network Heuristic. This scheme ensures that every bitstring correspond to a valid Steiner tree and thus eliminates the need for penalty terms in the cost function. The GA is tested on all SPG instances from the OR-Library of which the largest graphs have 2,500 vertices and 62,500 edges. When executed 10 times on each of 58 graph examples, the GA finds the global optimum at least once for 55 graphs and every time for 43 graphs. In total the GA finds the global optimum in 77 % of all program executions and is within 1 % from the global optimum in more than 92 % of all executions. The performance is compared to that of two branch-and-cut algorithms and one of the very best deterministic heuristics, an iterated version of the Shortest Path Heuristic (SPH-I). For all test examples but one, even the worst result ever found by the GA is equal to or better than the result of SPH-I and in many cases the average error ratio of the GA is an order of magnitude better than that of SPH-I. The runtime of the GA is moderate for all test examples. This is in contrast to SPH-I as well as the branch-and-cut algorithms, for which the runtime in some cases are extremely high

Performance Comparison of PSO and Its New Variants in the Context of VLSI Global Routing

Substantial reduction of gate delay occurred in recent times owing to radical decrement of transistor size. The interconnect length and delay are accordingly increased owing to the exponential escalation of packaging density with additional transistors being fabricated on the same chip area. The function of VLSI routing that seems to be more defying to the scholars, is categorized in global routing and detailed routing phase. In global routing phase, the prevalent method to lessen the wire length for reducing interconnect delay is to adjust the cost of the Steiner tree, devised by the terminal nodes to be interconnected. Nevertheless, Steiner tree problem is a NP-complete problem in classical graph theory where meta-heuristics might impart beneficial elucidations. Particle swarm optimization (PSO) is a robust algorithm concerning VLSI routing field. This chapter is regarding the proposal of a self-adaptive mechanism for monitoring acceleration coefficient of PSO and evaluating its functionalities with the existing acceleration coefficient controlled PSO in numerous allocation topologies of terminal nodes within definite VLSI layout. The outcomes of PSO variant with constriction factor in context to VLSI route reduction ability and robustness are also inspected. Additionally, a new effort in adapting the PSO with embracement of genetic algorithm is established

A parallel genetic algorithm for the Steiner Problem in Networks

This paper presents a parallel genetic algorithm to the Steiner Problem in Networks. Several previous papers have proposed the adoption of GAs and others metaheuristics to solve the SPN demonstrating the validity of their approaches. This work differs from them for two main reasons: the dimension and the characteristics of the networks adopted in the experiments and the aim from which it has been originated. The reason that aimed this work was namely to build a comparison term for validating deterministic and computationally inexpensive algorithms which can be used in practical engineering applications, such as the multicast transmission in the Internet. On the other hand, the large dimensions of our sample networks require the adoption of a parallel implementation of the Steiner GA, which is able to deal with such large problem instances

Variable neighbourhood search for the minimum labelling Steiner tree problem

We present a study on heuristic solution approaches to the minimum labelling Steiner tree problem, an NP-hard graph problem related to the minimum labelling spanning tree problem. Given an undirected labelled connected graph, the aim is to find a spanning tree covering a given subset of nodes of the graph, whose edges have the smallest number of distinct labels. Such a model may be used to represent many real world problems in telecommunications and multimodal transportation networks. Several metaheuristics are proposed and evaluated. The approaches are compared to the widely adopted Pilot Method and it is shown that the Variable Neighbourhood Search that we propose is the most effective metaheuristic for the problem, obtaining high quality solutions in short computational running time

Finding undetected protein associations in cell signaling by belief propagation

External information propagates in the cell mainly through signaling cascades and transcriptional activation, allowing it to react to a wide spectrum of environmental changes. High throughput experiments identify numerous molecular components of such cascades that may, however, interact through unknown partners. Some of them may be detected using data coming from the integration of a protein-protein interaction network and mRNA expression profiles. This inference problem can be mapped onto the problem of finding appropriate optimal connected subgraphs of a network defined by these datasets. The optimization procedure turns out to be computationally intractable in general. Here we present a new distributed algorithm for this task, inspired from statistical physics, and apply this scheme to alpha factor and drug perturbations data in yeast. We identify the role of the COS8 protein, a member of a gene family of previously unknown function, and validate the results by genetic experiments. The algorithm we present is specially suited for very large datasets, can run in parallel, and can be adapted to other problems in systems biology. On renowned benchmarks it outperforms other algorithms in the field.Comment: 6 pages, 3 figures, 1 table, Supporting Informatio

Variable neighbourhood search for the minimum labelling Steiner tree problem

We present a study on heuristic solution approaches to the minimum labelling Steiner tree problem, an NP-hard graph problem related to the minimum labelling spanning tree problem. Given an undirected labelled connected graph, the aim is to find a spanning tree covering a given subset of nodes of the graph, whose edges have the smallest number of distinct labels. Such a model may be used to represent many real world problems in telecommunications and multimodal transportation networks. Several metaheuristics are proposed and evaluated. The approaches are compared to the widely adopted Pilot Method and it is shown that the Variable Neighbourhood Search metaheuristic is the most effective approach to the problem, obtaining high quality solutions in short computational running times

On application of least-delay variation problem in ethernet networks using SDN concept

The goal of this paper is to present an application idea of SDN in Smart Grids, particularly, in the area of L2 multicast as defined by IEC 61850-9-2. Authors propose an Integer Linear Formulation (ILP) dealing with a Least-Delay-Variation multicast forwarding problem that has a potential to utilize Ethernet networks in a new way. The proposed ILP formulation is numerically evaluated on random graph topologies and results are compared to a shortest path tree approach that is traditionally a product of Spanning Tree Protocols. Results confirm the correctness of the ILP formulation and illustrate dependency of a solution quality on the selected graph models, especially, in a case of scale-free topologies

QoS multicast tree construction in IP/DWDM optical internet by bio-inspired algorithms

Copyright @ Elsevier Ltd. All rights reserved.In this paper, two bio-inspired Quality of Service (QoS) multicast algorithms are proposed in IP over dense wavelength division multiplexing (DWDM) optical Internet. Given a QoS multicast request and the delay interval required by the application, both algorithms are able to find a flexible QoS-based cost suboptimal routing tree. They first construct the multicast trees based on ant colony optimization and artificial immune algorithm, respectively. Then a dedicated wavelength assignment algorithm is proposed to assign wavelengths to the trees aiming to minimize the delay of the wavelength conversion. In both algorithms, multicast routing and wavelength assignment are integrated into a single process. Therefore, they can find the multicast trees on which the least wavelength conversion delay is achieved. Load balance is also considered in both algorithms. Simulation results show that these two bio-inspired algorithms can construct high performance QoS routing trees for multicast applications in IP/DWDM optical Internet.This work was supported in part ny the Program for New Century Excellent Talents in University, the Engineering and Physical Sciences Research Council (EPSRC) of UK under Grant EP/E060722/1, the National Natural Science Foundation of China under Grant no. 60673159 and 70671020, the National High-Tech Reasearch and Development Plan of China under Grant no. 2007AA041201, and the Specialized Research Fund for the Doctoral Program of Higher Education under Grant no. 20070145017