234 research outputs found
The Scintillator Upgrade of IceTop: Performance of the prototype array
The IceCube Collaboration foresees to upgrade IceTop, the present surface
array, with scintillator detectors augmented by radio antennas. As one of
several goals the scintillator detectors will be used to measure and mitigate
the effects of snow accumulation on the IceTop tanks: the increasing energy
threshold and efficiency loss are nowadays the sources of the largest
systematic uncertainties in shower reconstruction and mass composition
analysis. In addition, the upgrade will provide useful experience for the
development of next generation neutrino detectors proposed for the South Pole.
In the Austral summer season, 2017-2018 two full "stations" were installed near
the center of the IceTop array. Each station features custom-designed
electronics and consists of seven detectors, each having an active area of
1.5m plastic scintillator and wavelength shifting fibers read out by a
Silicon Photomultiplier. In this contribution we review the detector design and
performance, and show results from more than one year of operation of the
prototype stations. During that year several thousand air shower events have
been measured in coincidence with IceTop.Comment: Presented at the 36th International Cosmic Ray Conference (ICRC
2019). See arXiv:1907.11699 for all IceCube contribution
Long-distance migrants vary migratory behaviour as much as short-distance migrants : an individual-level comparison from a seabird species with diverse migration strategies
As environmental conditions fluctuate across years, seasonal migrants must determine where and when to move without comprehensive knowledge of conditions beyond their current location. Animals can address this challenge by following cues in their local environment to vary behaviour in response to current conditions, or by moving based on learned or inherited experience of past conditions resulting in fixed behaviour across years. It is often claimed that long-distance migrants are more fixed in their migratory behaviour because as distance between breeding and wintering areas increases, reliability of cues to predict distant and future conditions decreases. While supported by some population-level studies, the influence of migration distance on behavioural variation is seldom examined on an individual level. Lesser black-backed gulls Larus fuscus are generalist seabirds that use a diversity of migration strategies. Using high-resolution multi-year GPS tracking data from 82 individuals from eight colonies in Western Europe, we quantified inter- and intra-individual variation in non-breeding distributions, winter site fidelity, migration routes and timing of migration, with the objectives of determining how much variation lesser black-backed gulls have in their migratory behaviour and examining whether variation changes with migration distance. We found that intra-individual variation was significantly lower than variation between individuals for non-breeding distributions, winter site fidelity, migration routes and timing of migration, resulting in consistent individual strategies for all behaviours examined. Yet, intra-individual variation ranged widely among individuals (e.g. winter site overlap: 0-0.91 out of 1; migration timing: 0-192 days), and importantly, individual differences in variation were not related to migration distance. The apparent preference for maintaining a consistent strategy, present in even the shortest distance migrants, suggests that familiarity may be more advantageous than exactly tracking current environmental conditions. Yet, variation in behaviour across years was observed in many individuals and could be substantial. This suggests that individuals, irrespective of migration distance, have the capacity to adjust to current conditions within the broad confines of their individual strategies, and occasionally, even change their strategy
Cohesin Proteins Promote Ribosomal RNA Production and Protein Translation in Yeast and Human Cells
Cohesin is a protein complex known for its essential role in chromosome segregation. However, cohesin and associated factors have additional functions in transcription, DNA damage repair, and chromosome condensation. The human cohesinopathy diseases are thought to stem not from defects in chromosome segregation but from gene expression. The role of cohesin in gene expression is not well understood. We used budding yeast strains bearing mutations analogous to the human cohesinopathy disease alleles under control of their native promoter to study gene expression. These mutations do not significantly affect chromosome segregation. Transcriptional profiling reveals that many targets of the transcriptional activator Gcn4 are induced in the eco1-W216G mutant background. The upregulation of Gcn4 was observed in many cohesin mutants, and this observation suggested protein translation was reduced. We demonstrate that the cohesinopathy mutations eco1-W216G and smc1-Q843Δ are associated with defects in ribosome biogenesis and a reduction in the actively translating fraction of ribosomes, eiF2α-phosphorylation, and 35S-methionine incorporation, all of which indicate a deficit in protein translation. Metabolic labeling shows that the eco1-W216G and smc1-Q843Δ mutants produce less ribosomal RNA, which is expected to constrain ribosome biogenesis. Further analysis shows that the production of rRNA from an individual repeat is reduced while copy number remains unchanged. Similar defects in rRNA production and protein translation are observed in a human Roberts syndrome cell line. In addition, cohesion is defective specifically at the rDNA locus in the eco1-W216G mutant, as has been previously reported for Roberts syndrome. Collectively, our data suggest that cohesin proteins normally facilitate production of ribosomal RNA and protein translation, and this is one way they can influence gene expression. Reduced translational capacity could contribute to the human cohesinopathies
Panta Rhei benchmark dataset: socio-hydrological data of paired events of floods and droughts
As the adverse impacts of hydrological extremes increase in many regions of the world, a better understanding of the drivers of changes in risk and impacts is essential for effective flood and drought risk management and climate adaptation. However, there is currently a lack of comprehensive, empirical data about the processes, interactions and feedbacks in complex human-water systems leading to flood and drought impacts. Here we present a benchmark dataset containing socio-hydrological data of paired events, i.e., two floods or two droughts that occurred in the same area. The 45 paired events occurred in 42 different study areas and cover a wide range of socio-economic and hydro-climatic conditions. The dataset is unique in covering both floods and droughts, in the number of cases assessed, and in the quantity of socio-hydrological data. The benchmark dataset comprises: 1) detailed review style reports about the events and key processes between the two events of a pair; 2) the key data table containing variables that assess the indicators which characterise management shortcomings, hazard, exposure, vulnerability and impacts of all events; 3) a table of the indicators-of-change that indicate the differences between the first and second event of a pair. The advantages of the dataset are that it enables comparative analyses across all the paired events based on the indicators-of-change and allows for detailed context- and location-specific assessments based on the extensive data and reports of the individual study areas. The dataset can be used by the scientific community for exploratory data analyses e.g. focused on causal links between risk management, changes in hazard, exposure and vulnerability and flood or drought impacts. The data can also be used for the development, calibration and validation of socio-hydrological models. The dataset is available to the public through the GFZ Data Services (Kreibich et al. 2023, link for review: https://dataservices.gfz-potsdam.de/panmetaworks/review/923c14519deb04f83815ce108b48dd2581d57b90ce069bec9c948361028b8c85/).</p
Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.
Protein-protein interactions (PPIs) are of pivotal importance in the regulation of biological systems and are consequently implicated in the development of disease states. Recent work has begun to show that, with the right tools, certain classes of PPI can yield to the efforts of medicinal chemists to develop inhibitors, and the first PPI inhibitors have reached clinical development. In this Review, we describe the research leading to these breakthroughs and highlight the existence of groups of structurally related PPIs within the PPI target class. For each of these groups, we use examples of successful discovery efforts to illustrate the research strategies that have proved most useful.JS, DES and ARB thank the Wellcome Trust for funding.This is the author accepted manuscript. The final version is available from Nature Publishing Group via http://dx.doi.org/10.1038/nrd.2016.2
Non-standard neutrino interactions in IceCube
Non-standard neutrino interactions (NSI) may arise in various types of new physics. Their existence would change the potential that atmospheric neutrinos encounter when traversing Earth matter and hence alter their oscillation behavior. This imprint on coherent neutrino forward scattering can be probed using high-statistics neutrino experiments such as IceCube and its low-energy extension, DeepCore. Both provide extensive data samples that include all neutrino flavors, with oscillation baselines between tens of kilometers and the diameter of the Earth.
DeepCore event energies reach from a few GeV up to the order of 100 GeV - which marks the lower threshold for higher energy IceCube atmospheric samples, ranging up to 10 TeV.
In DeepCore data, the large sample size and energy range allow us to consider not only flavor-violating and flavor-nonuniversal NSI in the μ−τ sector, but also those involving electron flavor.
The effective parameterization used in our analyses is independent of the underlying model and the new physics mass scale. In this way, competitive limits on several NSI parameters have been set in the past. The 8 years of data available now result in significantly improved sensitivities. This improvement stems not only from the increase in statistics but also from substantial improvement in the treatment of systematic uncertainties, background rejection and event reconstruction
IceCube Search for Earth-traversing ultra-high energy Neutrinos
The search for ultra-high energy neutrinos is more than half a century old. While the hunt for these neutrinos has led to major leaps in neutrino physics, including the detection of astrophysical neutrinos, neutrinos at the EeV energy scale remain undetected. Proposed strategies for the future have mostly been focused on direct detection of the first neutrino interaction, or the decay shower of the resulting charged particle. Here we present an analysis that uses, for the first time, an indirect detection strategy for EeV neutrinos. We focus on tau neutrinos that have traversed Earth, and show that they reach the IceCube detector, unabsorbed, at energies greater than 100 TeV for most trajectories. This opens up the search for ultra-high energy neutrinos to the entire sky. We use ten years of IceCube data to perform an analysis that looks for secondary neutrinos in the northern sky, and highlight the promise such a strategy can have in the next generation of experiments when combined with direct detection techniques
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