Solute transfer across the sediment surface of a eutrophic lake: I. Porewater profiles from dialysis samplers

Porewater profiles often are used to identify and quantify important biogeochemical processes occurring in lake sediments. In this study, multiple porewater profiles were obtained from two eutrophic Swiss lakes using porewater equilibrators (peepers) in order to examine spatial and seasonal trends in biogeochemical processes. Variability in profile shapes and concentrations was small on spatial scales of a few meters, but the uncertainty in calculated diffusive fluxes across the sediment surface was, on average, 35%. Focusing of Fe and Mn oxides toward the lake center resulted in systematic increases in porewater concentrations and diffusive fluxes of Fe2+ and Mn2+ with increasing water depth; these fluxes are postulated to be regulated by the pH-dependent dissolution of reduced-metal phases. Despite higher concentrations of inorganic carbon, NH 4 + , Si and P in pelagic compared to littoral sites, diffusive fluxes of these substances across the sediment surface increased only slightly or not at all with increasing water depth. Porewater profiles did reveal temporal changes in Fe2+, Mn2+, Ca2+ and Mg2+ that were an indirect result of the large, seasonal changes in seston deposition, but no clear seasonal variations were found in diffusive fluxes of nutrients across the sediment surface. The intense mineralization occurring at the sediment surface was not reflected in the porewater profiles nor in the calculated diffusive fluxes. Calculated diffusive fluxes across the sediment surface resulted from decomposition occurring primarily in the top 5-7 cm of sediment. Diffusive fluxes from this subsurface mineralization were equal to the solute release from mineralization occurring at the sediment-water interface. Buried organic matter acts as a memory of previous lake conditons; it will require at least a decade before reductions in nutrient inputs to lakes fully reduce the diffusive fluxes into the lake from the buried reservoir of organic matte

Copper-rich “Halo” off Lake Superior\u27s Keweenaw Peninsula and how Mass Mill tailings dispersed onto tribal lands

Over a century ago, shoreline copper mills sluiced more than 64 million metric tonnes of tailings into Lake Superior, creating a “halo” around the Keweenaw Peninsula with a buried copper peak. Here we examine how tailings from one of the smaller mills (Mass Mill, 1902–1919) spread as a dual pulse across southern Keweenaw Bay and onto tribal L\u27Anse Indian Reservation lands. The fine (“slime clay”) fraction dispersed early and widely, whereas the coarse fraction (stamp sands) moved more slowly southward as a black sand beach deposit, leaving scattered residual patches. Beach stamp sands followed the path of sand eroding from Jacobsville Sandstone bluffs, mixing with natural sands and eventually adding onto Sand Point, at the mouth of L\u27Anse Bay. Dated sediment cores and a multi-elemental analysis of the buried Cu-rich peak in L\u27Anse Bay confirm a tailings origin. Copper concentrations are declining in the bay, yet copper fluxes remain elevated. The spatial and temporal studies underscore that enhanced sediment and copper fluxes around the Keweenaw Peninsula largely reflect historic mining releases. Mercury is correlated with copper, yet mercury concentrations and fluxes remain relatively low in Keweenaw Bay compared to nearby Superfund sites (Torch and Portage Lakes), perhaps reflecting the absence of smelters on Keweenaw Bay. Tribal efforts to remediate contamination are progressing, but are hindered by recent high water levels plus severe storms. The long-term repercussions of Mass Mill discharges caution against mine companies discharging even small amounts of tailings into coastal environments

The potential for CO \u3c inf\u3e 2 -induced acidification in freshwater: A great lakes case study

Ocean acidification will likely result in a drop of 0.3–0.4 pH units in the surface ocean by 2100, assuming anthropogenic CO2 emissions continue at the current rate. Impacts of increasing atmospheric pCO2 on pH in freshwater systems have scarcely been addressed. In this study, the Laurentian Great Lakes are used as a case study for the potential for CO2-induced acidification in freshwater systems as well as for assessment of the ability of current water quality monitoring to detect pH trends. If increasing atmospheric pCO2 is the only forcing, pH will decline in the Laurentian Great Lakes at the same rate and magnitude as the surface ocean through 2100. High-resolution numerical models and one high-resolution time series of data illustrate that the pH of the Great Lakes has significant spatio-temporal variability. Because of this variability, data from existing monitoring systems are insufficient to accurately resolve annual mean trends. Significant measurement uncertainty also impedes the ability to assess trends. To elucidate the effects of increasing atmospheric CO2 in the Great Lakes requires pH monitoring by collecting more accurate measurements with greater spatial and temporal coverage

Validation of revised methane and nitrous oxide profiles from MIPAS-ENVISAT

Improved versions of CH4 and N2O profiles derived at the Institute of Meteorology and Climate Research and Instituto de Astrofísica de Andalucía (CSIC) from spectra measured by the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) have become available. For the MIPAS full resolution period (2002–2004) these are V5H_CH4_21 and V5H_N2O_21 and for the reduced resolution period (2005–2012) these are V5R_CH4_224, V5R_CH4_225, V5R_N2O_224 and V5R_N2O_225. Here, we compare CH4 profiles to those measured by the Fourier Transform Spectrometer on board of the Atmospheric Chemistry Experiment (ACE-FTS), the HALogen Occultation Experiment (HALOE) and the Scanning Imaging Absorption Spectrometer for Atmospheric CHartographY (SCIAMACHY) and to the Global Cooperative Air Sampling Network (GCASN) surface data. We find the MIPAS CH4 profiles below 25 km to be typically higher in the order of 0.1 ppmv for both measurement periods. N2O profiles are compared to those measured by ACE-FTS, the Microwave Limb Sounder on board of the Aura satellite (Aura-MLS) and the Sub-millimetre Radiometer on board of the Odin satellite (Odin-SMR) as well as to the Halocarbons and other Atmospheric Trace Species Group (HATS) surface data. The mixing ratios from the satellite instruments agree well for the full resolution period. For the reduced resolution period, MIPAS produces similar values as Odin-SMR, but higher values than ACE-FTS and HATS. Below 27 km, the MIPAS profiles show higher mixing ratios than Aura-MLS, and lower values between 27 and 41 km. Cross comparisons between the two MIPAS measurement periods show that they generally agree quite well, but, especially for CH4, the reduced resolution period seems to produce slightly higher mixing ratios than the full resolution data

Inducible deletion of CD28 prior to secondary nippostrongylus brasiliensis infection impairs worm expulsion and recall of protective memory CD4 (+) T cell responses

IL-13 driven Th2 immunity is indispensable for host protection against infection with the gastrointestinal nematode Nippostronglus brasiliensis. Disruption of CD28 mediated costimulation impairs development of adequate Th2 immunity, showing an importance for CD28 during the initiation of an immune response against this pathogen. In this study, we used global CD28−/− mice and a recently established mouse model that allows for inducible deletion of the cd28 gene by oral administration of tamoxifen (CD28−/loxCre+/−+TM) to resolve the controversy surrounding the requirement of CD28 costimulation for recall of protective memory responses against pathogenic infections. Following primary infection with N. brasiliensis, CD28−/− mice had delayed expulsion of adult worms in the small intestine compared to wild-type C57BL/6 mice that cleared the infection by day 9 post-infection. Delayed expulsion was associated with reduced production of IL-13 and reduced serum levels of antigen specific IgG1 and total IgE. Interestingly, abrogation of CD28 costimulation in CD28−/loxCre+/− mice by oral administration of tamoxifen prior to secondary infection with N. brasiliensis resulted in impaired worm expulsion, similarly to infected CD28−/− mice. This was associated with reduced production of the Th2 cytokines IL-13 and IL-4, diminished serum titres of antigen specific IgG1 and total IgE and a reduced CXCR5+ TFH cell population. Furthermore, total number of CD4+ T cells and B220+ B cells secreting Th1 and Th2 cytokines were significantly reduced in CD28−/− mice and tamoxifen treated CD28−/loxCre+/− mice compared to C57BL/6 mice. Importantly, interfering with CD28 costimulatory signalling before re-infection impaired the recruitment and/or expansion of central and effector memory CD4+ T cells and follicular B cells to the draining lymph node of tamoxifen treated CD28−/loxCre+/− mice. Therefore, it can be concluded that CD28 costimulation is essential for conferring host protection during secondary N. brasiliensis infection

How genomics can help biodiversity conservation

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.info:eu-repo/semantics/publishedVersio

The era of reference genomes in conservation genomics

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics

The era of reference genomes in conservation genomics

info:eu-repo/semantics/publishedVersio