840 research outputs found
Isolation of anaerobic, extremely thermophilic, sulphur metabolising archaebacteria from New Zealand hot springs
Enrichments of New Zealand geo-thermal samples, initiated in anaerobic sulphur-containing media and incubated at temperatures above 85°C, yielded rod and coccal shaped organisms which possessed archaebacterial characteristics. Pure cultures were isolated and characterised. Five of the seven isolates, which were rod-shaped organisms and did not have an obligate requirement for sulphur respiration, were similar to Ther-moproteus sp. but had more neutral pH optima for growth. Three of these five Thermoproteus sp. were obligate heterotrophs, which has not previously been reported. The two coccal isolates had an obligate requirement for sulphur as an electron acceptor and were similar to Desulfurococcus sp. but again with more neutral pH optima for growth
The vanishing ideal of a finite set of points with multiplicity structures
Given a finite set of arbitrarily distributed points in affine space with
arbitrary multiplicity structures, we present an algorithm to compute the
reduced Groebner basis of the vanishing ideal under the lexicographic ordering.
Our method discloses the essential geometric connection between the relative
position of the points with multiplicity structures and the quotient basis of
the vanishing ideal, so we will explicitly know the set of leading terms of
elements of I. We split the problem into several smaller ones which can be
solved by induction over variables and then use our new algorithm for
intersection of ideals to compute the result of the original problem. The new
algorithm for intersection of ideals is mainly based on the Extended Euclidean
Algorithm.Comment: 12 pages,12 figures,ASCM 201
Health knowledge among the millennial generation
The Millennial Generation, also known as Generation Y, is the demographic cohort following Generation X, and is generally regarded to be composed of those individuals born between 1980 and 2000. They are the first to grow up in an environment where health-related information is widely available by internet, TV and other electronic media, yet we know very little about the scope of their health knowledge. This study was undertaken to quantify two domains of clinically relevant health knowledge: factual content and ability to solve health related questions (application) in nine clinically related medical areas. Study subjects correctly answered, on average, 75% of health application questions but only 54% of health content questions. Since students were better able to correctly answer questions dealing with applications compared to those on factual content contemporary US high school students may not use traditional hierarchical learning models in acquisition of their health knowledge
Critical Susceptibility Exponent Measured from Fe/W(110) Bilayers
The critical phase transition in ferromagnetic ultrathin Fe/W(110) films has
been studied using the magnetic ac susceptibility. A statistically objective,
unconstrained fitting of the susceptibility is used to extract values for the
critical exponent (gamma), the critical temperature Tc, the critical amplitude
(chi_o) and the range of temperature that exhibits power-law behaviour. A
fitting algorithm was used to simultaneously minimize the statistical variance
of a power law fit to individual experimental measurements of chi(T). This
avoids systematic errors and generates objective fitting results. An ensemble
of 25 measurements on many different films are analyzed. Those which permit an
extended fitting range in reduced temperature lower than approximately .00475
give an average value gamma=1.76+-0.01. Bilayer films give a weighted average
value of gamma = 1.75+-0.02. These results are in agreement with the
-dimensional Ising exponent gamma= 7/4. Measurements that do not exhibit
power-law scaling as close to Tc (especially films of thickness 1.75ML) show a
value of gamma higher than the Ising value. Several possibilities are
considered to account for this behaviour.Comment: -Submitted to Phys. Rev. B -Revtex4 Format -6 postscript figure
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Field-usable portable analyzer for chlorinated organic compounds
In 1992, a chemical sensor was developed which showed almost perfect selectivity to vapors of chlorinated solvents. When interfaced to an instrument, a chemical analyzer will be produced that has near- absolute selectivity to vapors of volatile chlorinated organic compounds. TRI has just completed the second of a 2-phase program to develop this new instrument system, which is called the RCL MONITOR. In Phase II, this instrument was deployed in 5 EM40 operations. Phase II applications covered clean-up process monitoring, environmental modeling, routine monitoring, health and safety, and technology validation. Vapor levels between 0 and 100 ppM can be determined in 90 s with a lower detection limit of 0.5 ppM using the hand-portable instrument. Based on the favorable performance of the RCL MONITOR, the commercial instrument was released for commercial sales on Sept. 20, 1996
Knowledge-based gene expression classification via matrix factorization
Motivation: Modern machine learning methods based on matrix decomposition techniques, like independent component analysis (ICA) or non-negative matrix factorization (NMF), provide new and efficient analysis tools which are currently explored to analyze gene expression profiles. These exploratory feature extraction techniques yield expression modes (ICA) or metagenes (NMF). These extracted features are considered indicative of underlying regulatory processes. They can as well be applied to the classification of gene expression datasets by grouping samples into different categories for diagnostic purposes or group genes into functional categories for further investigation of related metabolic pathways and regulatory networks.
Results: In this study we focus on unsupervised matrix factorization techniques and apply ICA and sparse NMF to microarray datasets. The latter monitor the gene expression levels of human peripheral blood cells during differentiation from monocytes to macrophages. We show that these tools are able to identify relevant signatures in the deduced component matrices and extract informative sets of marker genes from these gene expression profiles. The methods rely on the joint discriminative power of a set of marker genes rather than on single marker genes. With these sets of marker genes, corroborated by leave-one-out or random forest cross-validation, the datasets could easily be classified into related diagnostic categories. The latter correspond to either monocytes versus macrophages or healthy vs Niemann Pick C disease patients.Siemens AG, MunichDFG (Graduate College 638)DAAD (PPP Luso - Alem˜a and PPP Hispano - Alemanas
Semidefinite Characterization and Computation of Real Radical Ideals
For an ideal given by a set of generators, a new
semidefinite characterization of its real radical is
presented, provided it is zero-dimensional (even if is not). Moreover we
propose an algorithm using numerical linear algebra and semidefinite
optimization techniques, to compute all (finitely many) points of the real
variety as well as a set of generators of the real radical
ideal. The latter is obtained in the form of a border or Gr\"obner basis. The
algorithm is based on moment relaxations and, in contrast to other existing
methods, it exploits the real algebraic nature of the problem right from the
beginning and avoids the computation of complex components.Comment: 41 page
Interweaving PFASST and Parallel Multigrid
The parallel full approximation scheme in space and time (PFASST) introduced by Emmett and Minion in 2012 is an iterative strategy for the temporal parallelization of ODEs and discretized PDEs. As the name suggests, PFASST is similar in spirit to a space-time full approximation scheme multigrid method performed over multiple time steps in parallel. However, since the original focus of PFASST was on the performance of the method in terms of time parallelism, the solution of any spatial system arising from the use of implicit or semi-implicit temporal methods within PFASST have simply been assumed to be solved to some desired accuracy completely at each substep and each iteration by some unspecified procedure. It hence is natural to investigate how iterative solvers in the spatial dimensions can be interwoven with the PFASST iterations and whether this strategy leads to a more efficient overall approach. This paper presents an initial investigation on the relative performance of different strategies for coupling PFASST iterations with multigrid methods for the implicit treatment of diffusion terms in PDEs. In particular, we compare full accuracy multigrid solves at each substep with a small fixed number of multigrid V-cycles. This reduces the cost of each PFASST iteration at the possible expense of a corresponding increase in the number of PFASST iterations needed for convergence. Parallel efficiency of the resulting methods is explored through numerical examples
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