Validation of the GATE Monte Carlo simulation platform for modelling a CsI(Tl) scintillation camera dedicated to small animal imaging

Monte Carlo simulations are increasingly used in scintigraphic imaging to model imaging systems and to develop and assess tomographic reconstruction algorithms and correction methods for improved image quantitation. GATE (GEANT 4 Application for Tomographic Emission) is a new Monte Carlo simulation platform based on GEANT4 dedicated to nuclear imaging applications. This paper describes the GATE simulation of a prototype of scintillation camera dedicated to small animal imaging and consisting of a CsI(Tl) crystal array coupled to a position sensitive photomultiplier tube. The relevance of GATE to model the camera prototype was assessed by comparing simulated 99mTc point spread functions, energy spectra, sensitivities, scatter fractions and image of a capillary phantom with the corresponding experimental measurements. Results showed an excellent agreement between simulated and experimental data: experimental spatial resolutions were predicted with an error less than 100 mu m. The difference between experimental and simulated system sensitivities for different source-to-collimator distances was within 2%. Simulated and experimental scatter fractions in a [98-182 keV] energy window differed by less than 2% for sources located in water. Simulated and experimental energy spectra agreed very well between 40 and 180 keV. These results demonstrate the ability and flexibility of GATE for simulating original detector designs. The main weakness of GATE concerns the long computation time it requires: this issue is currently under investigation by the GEANT4 and the GATE collaboration

In vitro and in vivo evaluation of [I-123]-VEGF(165) as a potential tumor marker

peer reviewedOne of the research challenges in oncology is to develop new biochemical methods for noninvasive tumor therapy evaluation to determine,whether the chemotherapeutics is effective. Vascular endothelial growth factor (VEGF) was labeled with radioiodine and evaluated in vitro as well as in vivo, using A2058, a melanoma cell line overexpressing VEGFR-1 and -2. Saturation binding analysis with [I-125]-VEGF resulted in a K-d of 0.1 nM. Internalization assays indicate the preserved ligand induced internalization and metabolization of the tracer. Biodistribution studies with [I-123]-VEGF in wild type and A2058 tumor-bearing athymic mice showed low background activity and a tumor to reference tissue ratio of maximum 6.12. These results suggest that [I-123]-VEGF is a potentially suitable tracer for tumor therapy evaluation. (c) 2005 Elsevier Inc. All rights reserved

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

Geological and morphological setting of 2778 methane seeps in the Dnepr paleo-delta, northwestern Black Sea

The Dnepr paleo-delta area in the NW Black Sea is characterized by an abundant presence of methane seeps. During the expeditions of May–June 2003 and 2004 within the EU-funded CRIMEA project, detailed multibeam, seismic and hydro-acoustic water-column investigations were carried out to study the relation between the spatial distribution of methane seeps, sea-floor morphology and sub-surface structures.2778 new methane seeps were detected on echosounding records in an area of 1540 km2. All seeps are located in the transition zone between the continental shelf and slope, in water depths of 66 to 825 m. The integration of the different geophysical datasets clearly indicates that methane seeps are not randomly distributed in this area, but are concentrated in specific locations.The depth limit for the majority of the detected seeps is 725 m water depth, which corresponds more or less with the stability limit for pure methane hydrate at the ambient bottom temperature (8.9 °C) in this part of the Black Sea. This suggests that, where gas hydrates are stable, they play the role of buffer for the upward migration of methane gas and thus prevent seepage of methane bubbles into the water column.Higher up on the margin, gas seeps are widespread, but accurate mapping illustrates that seeps occur preferentially in association with particular morphological and sub-surface features. On the shelf, the highest concentration of seeps is found in elongated depressions (pockmarks) above the margins of filled channels. On the continental slope where no pockmarks have been observed, seepage occurs along crests of sedimentary ridges. There, seepage is focussed by a parallel-stratified sediment cover that thins out towards the ridge crests. On the slope, seepage also appears in the vicinity of canyons (bottom, flanks and margins) or near the scarps of submarine landslides where mass-wasting breaches the fine-grained sediment cover that acts as a stratigraphic seal. The seismic data show the presence of a distinct “gas front,” which has been used to map the depth of the free gas within the sea-floor sediments. The depth of this gas front is variable and locally domes up to the sea floor. Where the gas front approaches the seafloor, gas bubbles were detected in the water column. A regional map of the sub-surface depth of the gas front emphasises this “gas front-versus-seep” relationship.The integration of all data sets indicates that the spatial distribution of methane seeps in the Dnepr paleo-delta is mainly controlled by the gas-hydrate stability zone as well as by stratigraphic and sedimentary factors

Use of the GATE Monte Carlo package for dosimetry applications

6 pages, 3 figures - submitted to NIM A, presented by D. VisvikisInternational audienceOne of the roles for MC simulation studies is in the area of dosimetry. A number of different codes dedicated to dosimetry applications are available and widely used today, such as MCNP, EGSnrc and PTRAN. However, such codes do not easily facilitate the description of complicated 3D sources or emission tomography systems and associated data flow, which may be useful in different dosimetry application domains. Such problems can be overcome by the use of specific MC codes such as GATE, which is based on Geant4 libraries, providing a scripting interface with a number of advantages for the simulation of SPECT and PET systems. Despite this potential, its major disadvantage is in terms of efficiency involving long execution times for applications such as dosimetry. The strong points and disadvantages of GATE in comparison to other dosimetry specific codes are discussed and illustrated in terms of accuracy, efficiency and flexibility. A number of features, such as the use of voxelised and moving sources, as well as developments such as advanced visualisation tools and the development of dose estimation maps allowing GATE to be used for dosimetry applications are presented. In addition, different examples from dosimetry applications with GATE are given. Finally, future directions with respect to the use of GATE for dosimetry applications are outlined

GATE : a simulation toolkit for PET and SPECT

Monte Carlo simulation is an essential tool in emission tomography that can assist in the design of new medical imaging devices, the optimization of acquisition protocols, and the development or assessment of image reconstruction algorithms and correction techniques. GATE, the Geant4 Application for Tomographic Emission, encapsulates the Geant4 libraries to achieve a modular, versatile, scripted simulation toolkit adapted to the field of nuclear medicine. In particular, GATE allows the description of time-dependent phenomena such as source or detector movement, and source decay kinetics. This feature makes it possible to simulate time curves under realistic acquisition conditions and to test dynamic reconstruction algorithms. A public release of GATE licensed under the GNU Lesser General Public License can be downloaded at the address http://www-lphe.epfl.ch/GATE/