The REVERE project:Experiments with the application of probabilistic NLP to systems engineering

Despite natural language’s well-documented shortcomings as a medium for precise technical description, its use in software-intensive systems engineering remains inescapable. This poses many problems for engineers who must derive problem understanding and synthesise precise solution descriptions from free text. This is true both for the largely unstructured textual descriptions from which system requirements are derived, and for more formal documents, such as standards, which impose requirements on system development processes. This paper describes experiments that we have carried out in the REVERE1 project to investigate the use of probabilistic natural language processing techniques to provide systems engineering support

Increase in Tomato Locule Number Is Controlled by Two Single-Nucleotide Polymorphisms Located

In tomato (Solanum lycopersicum) fruit, the number of locules (cavities containing seeds that are derived from carpels) varies from two to up to 10 or more. Locule number affects fruit shape and size and is controlled by several quantitative trait loci(QTLs). The large majority of the phenotypic variation is explained by two of these QTLs, fasciated (fas) and locule number (lc), that interact epistatically with one another. FAS has been cloned, and mutations in the gene are described as key factors leading to the increase in fruit size in modern varieties. Here, we report the map-based cloning of lc. The lc QTL includes a 1,600-bp region that is located 1,080 bp from the 3# end of WUSCHEL, which encodes a homeodomain protein that regulates stem cell fate in plants. The molecular evolution of lc showed a reduction of diversity in cultivated accessions with the exception of two single-nucleotide polymorphisms. These two single-nucleotide polymorphisms were shown to be responsible for the increase in locule number. An evolutionary model of locule number is proposed herein, suggesting that the fas mutation appeared after the mutation in the lc locus to confer the extreme high-locule-number phenotype

Ionospheric and magnetic signatures of a high speed solar wind in low latitudes on 13 October 2012

International audienceThis paper presents the impact of a fast solar wind on the ionosphere, in low latitudes, on 13 October 2012. On that day, the high speed solar wind reached the Earth around 16:00UT, during the recovery phase of a geomagnetic storm which started around 00:00UT. The solar wind speed was determined to be 580km/s, on the same day, around 17:00UT. Its impact was observed in low and equatorial latitudes, in Africa and in Eastern South America, on the F layer and on the geomagnetic field variations. Through the analysis of magnetic indices, ionosonde characteristics and the horizontal component of the geomagnetic field, we found that the 13 October 2012 event exhibited a local impact, affecting the observatories situated in a longitude sector between 315°E and 45°E. Particularly, the F layer in Africa (observed by the ionosonde at Ascension Island) did not present any lift, and there was a delay for approximately two hours of the ascent of the F layer in America (the ionosonde at Fortaleza). In this case, there was an evident inhibition on the development of spread F at the time of the Pre Reversal Enhancement (PRE) in Africa and Eastern America, while the ionograms of the days before and after presented clear spread F traces. The disturbances of the ionospheric equivalent electric current (Diono) deduced from the variations of the geomagnetic field at M'Bour near Dakar (Africa) and at Kourou (Eastern America) exhibited on the dayside, an anti Sq current which is signature of the influence of the Disturbance Dynamo Electric Field (DDEF)

Middle and low latitude ionosphere response to 2015 St. Patrick's Day geomagnetic storm

International audienceThis paper presents a study of the St Patrick's Day storm of 2015, with its ionospheric response at middle and low latitudes. The effects of the storm in each longitudinal sector (Asian, African, American, and Pacific) are characterized using global and regional electron content. At the beginning of the storm, one or two ionospheric positive storm effects are observed depending on the longitudinal zones. After the main phase of the storm, a strong decrease in ionization is observed at all longitudes, lasting several days. The American region exhibits the most remarkable increase in vertical total electron content (vTEC), while in the Asian sector, the largest decrease in vTEC is observed. At low latitudes, using spectral analysis, we were able to separate the effects of the prompt penetration of the magnetospheric convection electric field (PPEF) and of the disturbance dynamo electric field (DDEF) on the basis of ground magnetic data. Concerning the PPEF, Earth's magnetic field oscillations occur simultaneously in the Asian, African, and American sectors, during southward magnetization of the B z component of the interplanetary magnetic field. Concerning the DDEF, diurnal magnetic oscillations in the horizontal component H of the Earth's magnetic field exhibit a behavior that is opposed to the regular one. These diurnal oscillations are recognized to last several days in all longitudinal sectors. The observational data obtained by all sensors used in the present paper can be interpreted on the basis of existing theoretical models

SIAMESE-RELATED1 Is Regulated Posttranslationally and Participates in Repression of Leaf Growth under Moderate Drought.

The plant cell cycle is tightly regulated by factors that integrate endogenous cues and environmental signals to adapt plant growth to changing conditions. Under drought, cell division in young leaves is blocked by an active mechanism, reducing the evaporative surface and conserving energy resources. The molecular function of cyclin-dependent kinase-inhibitory proteins (CKIs) in regulating the cell cycle has already been well studied, but little is known about their involvement in cell cycle regulation under adverse growth conditions. In this study, we show that the transcript of the CKI gene SIAMESE-RELATED1 (SMR1) is quickly induced under moderate drought in young Arabidopsis thaliana leaves. Functional characterization further revealed that SMR1 inhibits cell division and affects meristem activity, thereby restricting the growth of leaves and roots. Moreover, we demonstrate that SMR1 is a short-lived protein that is degraded by the 26S proteasome after being ubiquitinated by a Cullin-RING E3 ubiquitin ligase. Consequently, overexpression of a more stable variant of the SMR1 protein leads to a much stronger phenotype than overexpression of the native SMR1. Under moderate drought, both the SMR1 transcript and SMR1 protein accumulate. Despite this induction, smr1 mutants do not show overall tolerance to drought stress but do show less growth inhibition of young leaves under drought. Surprisingly, the growth-repressive hormone ethylene promotes SMR1 induction, but the classical drought hormone abscisic acid does not

Modification des propriétés des poudres par enrobage à sec dans un mélangeur Cyclomix

International audienceNous présentons ici une étude de la modification de certaines propriétés de poudres après enrobage de fines particules sur des particules hôtes dans un mélangeur de laboratoire modèle « Cyclomix », d'une contenance de 1 litre. Ce type d'appareil présente des effets de cisaillement et d'impact, permettant de réaliser rapidement des enrobages à sec avec des volumes significatifs de poudre. De plus des possibilités d'extrapolation à des échelles supérieures (jusqu'à 500 L) existent pour préparer des quantités industrielles de poudres à surface modifiée. Plusieurs systèmes particulaires sont utilisés, avec des particules hôtes différentes : des poudres de gel de silice et d'amidon de maïs. Différents types de particules invitées ont été également examinées : stéarate de magnésium, silice hydrophile ou hydrophobe. Les caractéristiques morphologiques des poudres, et les densités du solide (mesurées par pycnomètre à hélium) ont été déterminées. Les modifications apportées aux particules hôtes par les particules invitées sont caractérisées par des tests de cinétique d'adsorption de vapeur d'eau, de mesure d'angle de contact par goutte posée, et d'évaluation de la coulabilité par mesures de densités tassées ou non tassées. Les résultats obtenus montrent que le mélangeur Cyclomix permet de réaliser des enrobages de poudres modifiant les propriétés de façon sensible

Developing an intervention to facilitate family communication about inherited genetic conditions, and training genetic counsellors in its delivery.

Many families experience difficulty in talking about an inherited genetic condition that affects one or more of them. There have now been a number of studies identifying the issues in detail, however few have developed interventions to assist families. The SPRinG collaborative have used the UK Medical Research Council's guidance on Developing and Evaluating Complex Interventions, to work with families and genetic counsellors (GCs) to co-design a psycho-educational intervention to facilitate family communication and promote better coping and adaptation to living with an inherited genetic condition for parents and their children (<18 years). The intervention is modelled on multi-family discussion groups (MFDGs) used in psychiatric settings. The MFDG was developed and tested over three phases. First focus groups with parents, young people, children and health professionals discussed whether MFDG was acceptable and proposed a suitable design. Using evidence and focus group data, the intervention and a training manual were developed and three GCs were trained in its delivery. Finally, a prototype MFDG was led by a family therapist and co-facilitated by the three GCs. Data analysis showed that families attending the focus groups and intervention thought MFDG highly beneficial, and the pilot sessions had a significant impact on their family' functioning. We also demonstrated that it is possible to train GCs to deliver the MFDG intervention. Further studies are now required to test the feasibility of undertaking a definitive randomised controlled trial to evaluate its effectiveness in improving family outcomes before implementing into genetic counselling practice.The National Institute of Health Research funded the study but any views expressed do not necessarily reflect those of the Authority. Funded by NIHR reference number: RP-DG-1211-10015

Food allergy enhances allergic asthma in mice

BackgroundAtopic march refers to the typical transition from a food allergy in early childhood to allergic asthma in older children and adults. However the precise interplay of events involving gut, skin and pulmonary inflammation in this process is not completely understood.ObjectivesTo develop a mouse model of mixed food and respiratory allergy mimicking the atopic march and better understand the impact of food allergies on asthma.MethodsFood allergy to ovalbumin (OVA) was induced through intra-peritoneal sensitization and intra-gastric challenge, and/or a respiratory allergy to house dust mite (HDM) was obtained through percutaneous sensitization and intra-nasal challenges with dermatophagoides farinae (Der f) extract. Digestive, respiratory and systemic parameters were analyzed.ResultsOVA-mediated gut allergy was associated with an increase in jejunum permeability, and a worsening of Der f-induced asthma with stronger airway hyperresponsiveness and pulmonary cell infiltration, notably eosinophils. There was overproduction of the pro-eosinophil chemokine RANTES in broncho-alveolar lavages associated with an enhanced Th2 cytokine secretion and increased total and Der f-specific IgE when the two allergies were present. Both AHR and lung inflammation increased after a second pulmonary challenge.ConclusionGut sensitization to OVA amplifies Der f-induced asthma in mice

Characterization of immune cell infiltrate in tumor stroma and epithelial compartments in oral squamous cell carcinomas of Sudanese patients

Background Tumor immune infiltrate has been explored in oral squamous cell carcinoma (OSCC), but studies on simultaneous characterization of multiple immune cell subtypes separately in stromal and intraepithelial tumor compartments are limited. Objectives We aimed to investigate the immune cell infiltrate in OSCC by using immunohistochemistry (IHC) for a panel of inflammatory cells in stromal and epithelial tumor compartments for a better characterization of the tumors. Methods Thirty-six OSCC lesions and nine normal oral mucosa (NOM) samples from patients attending Khartoum Dental Teaching Hospital, Sudan were investigated for presence of tumor infiltrating lymphocytes, tumor-associated macrophages, tumor-associated neutrophils, and PD-L1 positive cells in the inflammatory infiltrate by single and double IHC. Digital quantitative analysis (Aperio Technologies Inc.) was performed separately for stromal and epithelial compartments. Results OSCC cases displayed a higher inflammatory infiltrate in the associated stroma, but not in the epithelial compartment when compared to NOM. The immunosuppressive type of inflammatory infiltrate, that is, T regulatory cells (FoxP3+ cells) was identified to be significantly higher in the epithelial compartment of tumors with advanced clinical state. An immunoscore developed by combining intraepithelial FoxP3+ and CD4+ cells was found significantly higher in lesions from elderly patients, localized at toombak dipping-related sites, poorly differentiated OSCCs, or with loco-regional lymph node spreading. Conclusions Despite heavy immune cell infiltration in tumor-associated stroma, the majority of OSCCs in this cohort displayed a low intraepithelial immune infiltration. An immunoscore based on combined CD4 and FoxP3 intraepithelial expression may serve as an indicator of advanced tumor progression and should be further investigated for its use as potential prognostic biomarker in OSCC.publishedVersio