Preliminary assessment of systems for deriving liquid and gaseous fuels from waste or grown organics

The overall feasibility of the chemical conversion of waste or grown organic matter to fuel is examined from the technical, economic, and social viewpoints. The energy contribution from a system that uses waste and grown organic feedstocks is estimated as 4 to 12 percent of our current energy consumption. Estimates of today's market prices for these fuels are included. Economic and social issues are as important as technology in determining the feasibility of such a proposal. An orderly program of development and demonstration is recommended to provide reliable data for an assessment of the viability of the proposal

A preliminary assessment of the feasibility of deriving liquid and gaseous fuels from grown and waste organics

The anticipated depletion of our resources of natural gas and petroleum in a few decades has caused a search for renewable sources of fuel. Among the possibilities is the chemical conversion of waste and grown organic matter into gaseous or liquid fuels. The overall feasibility of such a system is considered from the technical, economic, and social viewpoints. Although there are a number of difficult problems to overcome, this preliminary study indicates that this option could provide between 4 and 10 percent of the U.S. energy needs. Estimated costs of fuels derived from grown organic material are appreciably higher than today's market price for fossil fuel. The cost of fuel derived from waste organics is competitive with fossil fuel prices. Economic and social reasons will prohibit the allocation of good food producing land to fuel crop production

Structure and functional motifs of GCR1, the only plant protein with a GPCR fold?

Whether GPCRs exist in plants is a fundamental biological question. Interest in deorphanizing new G protein coupled receptors (GPCRs), arises because of their importance in signaling. Within plants, this is controversial as genome analysis has identified 56 putative GPCRs, including GCR1 which is reportedly a remote homologue to class A, B and E GPCRs. Of these, GCR2, is not a GPCR; more recently it has been proposed that none are, not even GCR1. We have addressed this disparity between genome analysis and biological evidence through a structural bioinformatics study, involving fold recognition methods, from which only GCR1 emerges as a strong candidate. To further probe GCR1, we have developed a novel helix alignment method, which has been benchmarked against the the class A – class B - class F GPCR alignments. In addition, we have presented a mutually consistent set of alignments of GCR1 homologues to class A, class B and class F GPCRs, and shown that GCR1 is closer to class A and /or class B GPCRs than class A, class B or class F GPCRs are to each other. To further probe GCR1, we have aligned transmembrane helix 3 of GCR1 to each of the 6 GPCR classes. Variability comparisons provide additional evidence that GCR1 homologues have the GPCR fold. From the alignments and a GCR1 comparative model we have identified motifs that are common to GCR1, class A, B and E GPCRs. We discuss the possibilities that emerge from this controversial evidence that GCR1 has a GPCR fol

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis

The closed-loop (loop-n-lock) hypothesis of protein folding suggests that loops of about 25 residues, closed through interactions between the loop ends (locks), play an important role in protein structure. Coarse-grain elastic network simulations, and examination of loop lengths in a diverse set of proteins, each supports a bias towards loops of close to 25 residues in length between residues of high stability. Previous studies have established a correlation between total contact distance (TCD), a metric of sequence distances between contacting residues (cf. contact order), and the log-folding rate of a protein. In a set of 43 proteins, we identify an improved correlation ( r 2 = 0.76), when the metric is restricted to residues contacting the locks, compared to the equivalent result when all residues are considered ( r 2 = 0.65). This provides qualified support for the hypothesis, albeit with an increased emphasis upon the importance of a much larger set of residues surrounding the locks. Evidence of a similar-sized protein core/extended nucleus (with significant overlap) was obtained from TCD calculations in which residues were successively eliminated according to their hydrophobicity and connectivity, and from molecular dynamics simulations. Our results suggest that while folding is determined by a subset of residues that can be predicted by application of the closed-loop hypothesis, the original hypothesis is too simplistic; efficient protein folding is dependent on a considerably larger subset of residues than those involved in lock formation. </jats:p

Centaurus A: multiple outbursts or bursting bubble?

We present new radio observations of the brighter region of the northern lobe (the Northern Middle Lobe, NML) of Centaurus A obtained at 20 cm with the Australia Telescope Compact Array. The angular resolutions are ~50 and ~130 arcsec, therefore much higher than for the previously available radio images of this region. The most interesting feature detected is a large-scale jet that connects the inner radio lobe and the NML and that is imaged for the first time. The NML itself appears as diffuse emission with a relatively bright ridge on the eastern side. The radio morphology of Centaurus A and, in particular, its NML could be the result of a precessing jet that has undergone a strong interaction with the environment at least in the northern side. The very big drop in intensity between the inner jet and the large-scale jet can be explained with a sequence of bursts of activity at different epochs in the life of the source. Alternatively (or additionally) a ``bursting bubble'' model is proposed which could also explain the good collimation of the large-scale jet. In this model, the plasma accumulated in the inner lobe would be able to ``burst'' out only through one nozzle that would be the region where the large-scale jet forms. From the comparison between the radio emission and the regions of ionized gas we find that the inner optical filament falls about 2 arcmin (~2 kpc) away from the large-scale radio jet. Thus, this filament does not seem to have experienced a direct interaction with the radio plasma. The outer filaments appear to be, in projection, closer to the radio emission, arguing for a direct interaction with the radio jet. However, also in this case a more complicated interaction than assumed so far has to be occuring.Comment: To appear in MNRAS; 11 pages, LateX, 7 figures. Fig 1 is available at http://www.ira.bo.cnr.it/~rmorgant/Centaurus

Consecutive Virgin Births in the New World Boid Snake, the Colombian Rainbow Boa, Epicrates maurus

Until recently, facultative automictic parthenogenesis within the squamate reptiles exhibiting ZZ:ZW genetic sex determination has resulted in single reproductive events producing male (ZZ) or female (ZW) offspring. With the recent discovery of viable parthenogenetically produced female (WW) Boa constrictors, the existence of further parthenogenetic events resulting in WW females was questioned. Here, we provide genetic evidence for consecutive virgin births by a female Colombian rainbow boa (Epicrates maurus), resulting in the production of WW females likely through terminal fusion automixis. Samples were screened at 22 microsatellite loci with 12 amplifying unambiguous products. Of these, maternal heterozygosity was observed in 4, with the offspring differentially homozygous at each locus. This study documents the first record of parthenogenesis within the genus Epicrates, a second within the serpent lineage Boidae, and the third genetically confirmed case of consecutive virgin births of viable offspring within any vertebrate lineage. Unlike the recent record in Boa constrictors, the female described here was isolated from conspecifics from birth, demonstrating that males are not required to stimulate parthenogenetic reproduction in this species and possibly other Boa