Perceived characteristics of the environment associated with active travel: development and testing of a new scale

Background Environmental characteristics may be associated with patterns of physical activity. However, the development of instruments to measure perceived characteristics of the local environment is still at a comparatively early stage, and published instruments are not necessarily suitable for application in all settings. We therefore developed and established the test-retest reliability of a new scale for use in a study of the correlates of active travel and overall physical activity in deprived urban neighbourhoods in Glasgow, Scotland. Methods We developed and piloted a 14-item scale based on seven constructs identified from the literature (aesthetics, green space, access to amenities, convenience of routes, traffic, road safety and personal safety). We administered the scale to all participants in a random postal survey (n = 1322) and readministered the scale to a subset of original respondents (n = 125) six months later. We used principal components analysis and Varimax rotation to identify three principal components (factors) and derived summary scores for subscales based on these factors. We examined the internal consistency of these subscales using Cronbach's alpha and examined the test-retest reliability of the individual items, the subscale summary scores and an overall summary neighbourhood score using a combination of correlation coefficients and Cohen's kappa with and without weighting. Results Public transport and proximity to shops were the items most likely to be rated positively, whereas traffic volume, traffic noise and road safety for cyclists were most likely to be rated negatively. Three principal components – 'safe and pleasant surroundings', 'low traffic' and 'convenience for walking' – together explained 45% of the total variance. The test-retest reliability of individual items was comparable with that of items in other published scales (intraclass correlation coefficients (ICCs) 0.34–0.70; weighted Cohen's kappa 0.24–0.59). The overall summary neighbourhood score had acceptable internal consistency (Cronbach's alpha 0.72) and test-retest reliability (ICC 0.73). Conclusion This new scale contributes to the development of a growing set of tools for investigating the role of perceived environmental characteristics in explaining or mediating patterns of active travel and physical activity

Evaluating health effects of transport interventions: methodologic case study

Background: There is little evidence about the effects of environmental interventions on population levels of physical activity. Major transport projects may promote or discourage physical activity in the form of walking and cycling, but researching the health effects of such “natural experiments” in transport policy or infrastructure is challenging. Methods: Case study of attempts in 2004–2005 to evaluate the effects of two major transport projects in Scotland: an urban congestion charging scheme in Edinburgh, and a new urban motorway (freeway) in Glasgow. Results: These interventions are typical of many major transport projects. They are unique to their context. They cannot easily be separated from the other components of the wider policies within which they occur. When, where, and how they are implemented are political decisions over which researchers have no control. Baseline data collection required for longitudinal studies may need to be planned before the intervention is certain to take place. There is no simple way of defining a population or area exposed to the intervention or of defining control groups. Changes in quantitative measures of health-related behavior may be difficult to detect. Conclusions: Major transport projects have clear potential to influence population health, but it is difficult to define the interventions, categorize exposure, or measure outcomes in ways that are likely to be seen as credible in the field of public health intervention research. A final study design is proposed in which multiple methods and spatial levels of analysis are combined in a longitudinal quasi-experimental study

A forward solution for RF impedance tomography in wood

Both integral equation and differential equation methods enable modelling current and hence impedance of wood, to provide the forward solution for impedance tomography that in turn provides a measure of its internal moisture distribution. Previously, we have used a series impedance model and successfully demonstrated measurement of internal moisture distribution. Here we describe the adaptation of our integral equation method for this application. This has required an alternative calculation to model the impressed field from the segmented electrodes used in the measurements to date, and we demonstrate distortion of the anomalous field due to the presence of a wood dielectric, and the field magnitude. Further work will be required to translate the resulting field distribution from our model, to complex current and hence impedance readings, to allow completion of tomographic reconstruction using this approach

Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea)

Complete mitochondrial genomes have been shown to be reliable markers for phylogeny reconstruction among diverse animal groups. However, the relative difficulty and high cost associated with obtaining de novo full mitogenomes have frequently led to conspicuously low taxon sampling in ensuing studies. Here, we report the successful use of an economical and accessible method for assembling complete or near-complete mitogenomes through shot-gun next-generation sequencing of a single library made from pooled total DNA extracts of numerous target species. To avoid the use of separate indexed libraries for each specimen, and an associated increase in cost, we incorporate standard polymerase chain reaction-based “bait” sequences to identify the assembled mitogenomes. The method was applied to study the higher level phylogenetic relationships in the weevils (Coleoptera: Curculionoidea), producing 92 newly assembled mitogenomes obtained in a single Illumina MiSeq run. The analysis supported a separate origin of wood-boring behavior by the subfamilies Scolytinae, Platypodinae, and Cossoninae. This finding contradicts morphological hypotheses proposing a close relationship between the first two of these but is congruent with previous molecular studies, reinforcing the utility of mitogenomes in phylogeny reconstruction. Our methodology provides a technically simple procedure for generating densely sampled trees from whole mitogenomes and is widely applicable to groups of animals for which bait sequences are the only required prior genome knowledge

Reading between the LINEs to see into the past

Transposable elements (TEs) are an important source of genome diversity and play a crucial role in genome evolution. A recent study by Zhao et al. describes novel patterns of TE diversification in the genome of the extinct mammoth Mammuthus primigenius. Analysis of Mammuthus has provided a unique genome landscape, a pivotal species for understanding TEs and genome evolution and hints at the diversity we verge on discovering by expanding our taxonomic sampling among genomes. Strategies based on this work might also revolutionize investigations of the interface between TE dynamics and genome diversity. © 2009 Elsevier Ltd. All rights reserved

Tomographic MAX-DOAS observations of sun illuminated targets: a new technique providing well defined absorption paths in the boundary layer

A novel experimental procedure to measure the surface-near distribution of atmospheric trace gases using passive Multi-Axis-Differential Absorption Optical Spectroscopy (MAX-DOAS) is proposed. The idea consists of pointing the receiving telescope of the spectrometer to non-reflecting surfaces or to ‘bright’ targets placed at known distances from the measuring device, which are illuminated by sunlight. We show that the partial trace gas absorptions between the top of the atmosphere and the target can be easily removed from the measured total absorption. Thus it is possible to derive the average concentration of trace gases like e.g. NO2, HCHO, SO2, H2O, Glyoxal, BrO and others along the line of sight between the instrument and the target like for the well-known long-path DOAS observations (but with much less expense). If tomographic arrangements are used, even two- or three-dimensional trace gas distributions can be retrieved. The basic assumptions of the proposed method are confirmed by test measurements across the city of Heidelberg

Second-Generation Objects in the Universe: Radiative Cooling and Collapse of Halos with Virial Temperatures Above 10^4 Kelvin

The first generation of protogalaxies likely formed out of primordial gas via H2-cooling in cosmological minihalos with virial temperatures of a few 1000K. However, their abundance is likely to have been severely limited by feedback processes which suppressed H2 formation. The formation of the protogalaxies responsible for reionization and metal-enrichment of the intergalactic medium, then had to await the collapse of larger halos. Here we investigate the radiative cooling and collapse of gas in halos with virial temperatures Tvir > 10^4K. In these halos, efficient atomic line radiation allows rapid cooling of the gas to 8000 K; subsequently the gas can contract nearly isothermally at this temperature. Without an additional coolant, the gas would likely settle into a locally gravitationally stable disk; only disks with unusually low spin would be unstable. However, we find that the initial atomic line cooling leaves a large, out-of-equilibrium residual free electron fraction. This allows the molecular fraction to build up to a universal value of about x(H2) = 10^-3, almost independently of initial density and temperature. We show that this is a non--equilibrium freezeout value that can be understood in terms of timescale arguments. Furthermore, unlike in less massive halos, H2 formation is largely impervious to feedback from external UV fields, due to the high initial densities achieved by atomic cooling. The H2 molecules cool the gas further to about 100K, and allow the gas to fragment on scales of a few 100 Msun. We investigate the importance of various feedback effects such as H2-photodissociation from internal UV fields and radiation pressure due to Ly-alpha photon trapping, which are likely to regulate the efficiency of star formation.Comment: Revised version accepted by ApJ; some reorganization for clarit

Comparison of Seasonal Cycles of Phytoplankton Chlorophyll, Aerosols, Winds and Sea-Surface Temperature off Somalia

In climate research, an important task is to characterize the relationships between Essential Climate Variables (ECVs). Here, satellite-derived data sets have been used to examine the seasonal cycle of phytoplankton (chlorophyll concentration) in the waters off Somalia, and its relationship to aerosols, winds and Sea Surface Temperature (SST). Chlorophyll-a (Chl-a) concentration, Aerosol Optical Thickness (AOT), Ångström Exponent (AE), Dust Optical Thickness (DOT), SST and sea-surface wind data for a 16-year period were assembled from various sources. The data were used to explore whether there is evidence to show that dust aerosols enhance Chl-a concentration in the study area. The Cross Correlation Function (CCF) showed highest positive correlation (r2 = 0.3) in the western Arabian Sea when AOT led Chl-a by 1–2 time steps (here, 1 time step is 8 days). A 2 × 2◦ box off Somalia was selected for further investigations. The correlations of alongshore wind speed, Ekman Mass Transport (EMT) and SST with Chl-a were higher than that of AOT, for a lag of 8 days. When all four variables were considered together in a multiple linear regression, the increase in r2 associated with the AOT is only about 0.02, a consequence of covariance among AOT, SST, EMT and alongshore wind speed. The AOT data show presence of dust aerosols most frequently during the summer monsoon season (June–September). When the analyses were repeated for the dust aerosol events, the correlations were generally lower, but still significant. Again, the inclusion of DOT in the multiple linear regression increased the correlation coefficient by only 2%, indicating minor enhancement in Chl-a concentration. Interestingly, during summer monsoon season, there is a higher probability of finding more instances of positive changes in Chl-a after one time step, regardless of whether there is dust aerosol or not. On the other hand, during the winter monsoon season (November–December) and rest of the year, the probability of Chl-a enhancement is higher when dust aerosol is present than when it is absent. The phase relationship in the 8-day climatologies of Chl-a and AOT (derived from NASA’s SeaWiFS and MODIS-A ocean colour processing chain) showed that AOTled Chl-a for most of the summer monsoon season, except when Chl-a was very high, during which time, Chl-a led AOT. The phase shift in the Chl-a and AOT climatological relationship at the Chl-a peak was not observed when AOT from Aerosol Climate Change Initiative (Aerosol-CCI) was used