Genomic Analysis of Stress Response Against Arsenic in \u3cem\u3eCaenorhabditis elegans\u3c/em\u3e

Arsenic, a known human carcinogen, is widely distributed around the world and found in particularly high concentrations in certain regions including Southwestern US, Eastern Europe, India, China, Taiwan and Mexico. Chronic arsenic poisoning affects millions of people worldwide and is associated with increased risk of many diseases including arthrosclerosis, diabetes and cancer. In this study, we explored genome level global responses to high and low levels of arsenic exposure in Caenorhabditis elegans using Affymetrix expression microarrays. This experimental design allows us to do microarray analysis of dose-response relationships of global gene expression patterns. High dose (0.03%) exposure caused stronger global gene expression changes in comparison with low dose (0.003%) exposure, suggesting a positive dose-response correlation. Biological processes such as oxidative stress, and iron metabolism, which were previously reported to be involved in arsenic toxicity studies using cultured cells, experimental animals, and humans, were found to be affected in C. elegans. We performed genome-wide gene expression comparisons between our microarray data and publicly available C. elegans microarray datasets of cadmium, and sediment exposure samples of German rivers Rhine and Elbe. Bioinformatics analysis of arsenic-responsive regulatory networks were done using FastMEDUSA program. FastMEDUSA analysis identified cancer-related genes, particularly genes associated with leukemia, such as dnj-11, which encodes a protein orthologous to the mammalian ZRF1/MIDA1/MPP11/DNAJC2 family of ribosome-associated molecular chaperones. We analyzed the protective functions of several of the identified genes using RNAi. Our study indicates that C. elegans could be a substitute model to study the mechanism of metal toxicity using high-throughput expression data and bioinformatics tools such as FastMEDUSA

An Updated Line List for Spectroscopic Investigation of G Stars- I: Redetermination of the Abundances in the Solar Photosphere

We propose a line list that may be useful for the abundance analysis of G-type stars in the wavelength range 4080 -- 6780 A. It is expected that the line list will be useful for surveys/libraries with overlapping spectral regions (e.g. ELODIE/SOPHIE libraries, UVES-580 setting of Gaia-ESO), and in particular for the analysis of F- and G-type stars in general. The atomic data are supplemented by detailed references to the sources. We estimated the Solar abundances using stellar lines and the high-resolution Kitt Peak National Observatory (KPNO) spectra of the Sun to determine the uncertainty in the log gf values. By undertaking a systematic search that makes use of the lower excitation potential and gf-values and using revised multiplet table as an initial guide, we identified 363 lines of 24 species that have accurate gf-values and are free of blends in the spectra of the Sun and a Solar analogue star, HD 218209 (G6V), for which accurate and up-to-date abundances were obtained from both ELODIE and PolarBASE spectra of the star. For the common lines with the Gaia-ESO line list v.6 provided by the Gaia-ESO collaboration, we discovered significant inconsistencies in the gf-values for certain lines of varying species.Comment: 17 pages, 4 figures and 5 tables, accepted for publication in Physics and Astronomy Report

Genomic Analysis of Immune Response against Vibrio Cholerae Hemolysin in Caenorhabditis elegans

Vibrio cholerae cytolysin (VCC) is among the accessory V. cholerae virulence factors that may contribute to disease pathogenesis in humans. VCC, encoded by hlyA gene, belongs to the most common class of bacterial toxins, known as poreforming toxins (PFTs). V. cholerae infects and kills Caenorhabditis elegans via cholerae toxin independent manner. VCC is required for the lethality, growth retardation and intestinal cell vacuolation during the infection. However, little is known about the host gene expression responses against VCC. To address this question we performed a microarray study in C. elegans exposed to V. cholerae strains with intact and deleted hlyA genes. Many of the VCC regulated genes identified, including C-type lectins, Prion-like (glutamine [Q]/asparagine [N]-rich)-domain containing genes, genes regulated by insulin/ IGF-1-mediated signaling (IIS) pathway, were previously reported as mediators of innate immune response against other bacteria in C. elegans. Protective function of the subset of the genes up-regulated by VCC was confirmed using RNAi. By means of a machine learning algorithm called FastMEDUSA, we identified several putative VCC induced immune regulatory transcriptional factors and transcription factor binding motifs. Our results suggest that VCC is a major virulence factor, which induces a wide variety of immune response- related genes during V. cholerae infection in C. elegans

Design and Analysis of the Thermal Management System of a Hybrid Turboelectric Regional Jet for the NASA ULI

Presented at AIAA/IEEE Electric Aircraft Technologies Symposium 2020A team of researchers from multiple universities are collaborating on the demonstration of a hybrid turboelectric regional jet for 2030 under the NASA ULI Program. The thermal management is one of the major challenges for the development of such an electric propulsion concept. Existing studies hardly modeled the thermal management systems with the propulsion systems nor integrated it to the aircraft for system- and mission-level analyses. Therefore, it is very difficult to verify whether a design of the thermal management system is feasible and optimal based on current literature. To fill this gap, this paper presents a design of the thermal management system for the hybrid turboelectric regional jet under the ULI program and integrates it to the aircraft. The TMS is tested against the cooling requirements, where the thermal loads from the electric propulsion system are quantified through the whole mission. Potential solutions for peak thermal loads during takeoff and climb are also proposed and analyzed, where additional coolant or phase change materials are used. Moreover, the impacts of the TMS on the system- and mission-level performance are investigated by the presented integration approach as well. It is discovered that a basic oil-air thermal management system cannot fully remove the heat during the early mission segments. Using additional coolant or phase change materials as heat absorption can handle such heating problem, but penalty due to additional weight is added. It is found that greater penalties in fuel burn and takeoff weight are added by additional coolant solution than the phase change material solution.NASA, GR1000571

First description of early developmental stages of the native invasive fireworm Hermodice carunculata (Annelida, Amphinomidae): A cue to the warming of the mediterranean sea

Observations on the reproductive behavior and larval development of the bristled fireworm Hermodice carunculata, a common inhabitant of shallow marine rocky bottoms in the Southern Mediterranean Sea, are reported here. In recent years, an increase in abundance and a northward expansion of the populations along the Southern Italian coast were jointly detected, presumably linked to rising water temperature in the Mediterranean Sea. After making in situ observations on two consecutive spawning events, live worms and fresh spawn were brought into the lab, kept at either 27°C or 22°C and followed through development. Complete and normal development was observed only at 27°C. By contrast, embryonic and larval development appeared to be slowed down at 22°C, stopping at the protrochophora stage. Early development of H. carunculata suggests the existence of a long pre-metamorphic, planktotrophic period in the water column that can explain the genetic cohesion of this species and the low genetic divergence found among populations across the Atlantic Ocean. The observed increase in abundance, invasiveness potential, and geographical northern distribution of the bearded fireworms is probably determined by a progressive northward latitudinal shift of the sea surface temperature coincident with the temperature threshold required for the developmental and reproductive success of the worm

Structural, Vibrational and Electronic Properties of Single Layer Hexagonal Crystals of Groups IV and V

Using first-principles density functional theory calculations, we investigate a family of stable two-dimensional crystals with chemical formula $A_2B_2$, where $A$ and $B$ belong to groups IV and V, respectively ($A$ = C, Si, Ge, Sn, Pb; $B$ = N, P, As, Sb, Bi). Two structural symmetries of hexagonal lattices $P\bar{6}m2$ and $P\bar{3}m1$ are shown to be dynamically stable, named as $\alpha$- and $\beta$-phases correspondingly. Both phases have similar cohesive energies, and the $\alpha$-phase is found to be energetically favorable for structures except CP, CAs, CSb and CBi, for which the $\beta$-phase is favored. The effects of spin-orbit coupling and Hartree-Fock corrections to exchange-correlation are included to elucidate the electronic structures. All structures are semiconductors except CBi and PbN, which have metallic character. SiBi, GeBi and SnBi have direct band gaps, whereas the remaining semiconductor structures have indirect band gaps. All structures have quartic dispersion in their valence bands, some of which make the valence band maximum and resemble a Mexican hat shape. SnAs and PbAs have purely quartic valence band edges, i.e. $E{\sim}{-}\alpha k^4$, a property reported for the first time. The predicted materials are candidates for a variety of applications. Owing to their wide band gaps, CP, SiN, SiP, SiAs, GeN, GeP can find their applications in optoelectronics. The relative band positions qualify a number of the structures as suitable for water splitting, where CN and SiAs are favorable at all pH values. Structures with quartic band edges are expected to be efficient for thermoelectric applications

Exposure of mediterranean countries to ocean acidification

This study examines the potential effects of ocean acidification on countries and fisheries of the Mediterranean Sea. The implications for seafood security and supply are evaluated by examining the sensitivity of the Mediterranean to ocean acidification at chemical, biological, and macro-economic levels. The limited information available on impacts of ocean acidification on harvested (industrial, recreational, and artisanal fishing) and cultured species (aquaculture) prevents any biological impact assessment. However, it appears that non-developed nations around the Mediterranean, particularly those for which fisheries are increasing, yet rely heavily on artisanal fleets, are most greatly exposed to socioeconomic consequences from ocean acidification. © 2014 by the authors; licensee MDPI, Basel, Switzerland

The complete mitochondrial genome of the foodborne parasitic pathogen Cyclospora cayetanensis

Cyclospora cayetanensis is a human-specific coccidian parasite responsible for several food and water-related outbreaks around the world, including the most recent ones involving over 900 persons in 2013 and 2014 outbreaks in the USA. Multicopy organellar DNA such as mitochondrion genomes have been particularly informative for detection and genetic traceback analysis in other parasites. We sequenced the C. cayetanensis genomic DNA obtained from stool samples from patients infected with Cyclospora in Nepal using the Illumina MiSeq platform. By bioinformatically filtering out the metagenomic reads of non-coccidian origin sequences and concentrating the reads by targeted alignment, we were able to obtain contigs containing Eimeria-like mitochondrial, apicoplastic and some chromosomal genomic fragments. A mitochondrial genomic sequence was assembled and confirmed by cloning and sequencing targeted PCR products amplified from Cyclospora DNA using primers based on our draft assembly sequence. The results show that the C. cayetanensis mitochondrion genome is 6274 bp in length, with 33% GC content, and likely exists in concatemeric arrays as in Eimeria mitochondrial genomes. Phylogenetic analysis of the C. cayetanensis mitochondrial genome places this organism in a tight cluster with Eimeria species. The mitochondrial genome of C. cayetanensis contains three protein coding genes, cytochrome (cytb), cytochrome C oxidase subunit 1 (cox1), and cytochrome C oxidase subunit 3 (cox3), in addition to 14 large subunit (LSU) and nine small subunit (SSU) fragmented rRNA genes