Multi-site H-bridge breathers in a DNA--shaped double strand

We investigate the formation process of nonlinear vibrational modes representing broad H-bridge multi--site breathers in a DNA--shaped double strand. Within a network model of the double helix we take individual motions of the bases within the base pair plane into account. The resulting H-bridge deformations may be asymmetric with respect to the helix axis. Furthermore the covalent bonds may be deformed distinctly in the two backbone strands. Unlike other authors that add different extra terms we limit the interaction to the hydrogen bonds within each base pair and the covalent bonds along each strand. In this way we intend to make apparent the effect of the characteristic helicoidal structure of DNA. We study the energy exchange processes related with the relaxation dynamics from a non-equilibrium conformation. It is demonstrated that the twist-opening relaxation dynamics of a radially distorted double helix attains an equilibrium regime characterized by a multi-site H-bridge breather.Comment: 27 pages and 10 figure

Peculiar objects towards 3FGL J0133.3+5930: an eclipsing Be star and an active galactic nucleus

Aims. We aim to contribute to the identification of unassociated gamma-ray sources in the galactic plane in order to enlarge the currently known population of gamma-ray binaries and related systems, such as radio emitting X-ray binaries and microquasars. These objects are currently regarded as excellent test beds for the understanding of high energy phenomena in stellar systems. Methods. Potential targets of study are selected based on cross-identification of the 3rd Fermi Large Area Telescope catalogue with historical catalogues of luminous stars often found as optical counterparts in known cases. Follow-up observations and analysis of multi-wavelength archival data are later used to seek further proofs of association beyond the simple positional agreement. Results. Current results enable us to present here the case of the Fermi source 3FGL J0133.3+5930 where two peculiar objects have been discovered inside its region of uncertainty. One of them is the star TYC 3683-985-1 (LS I +59 79) whose eclipsing binary nature is reported in this work. The other one is the X-ray source SWIFT J0132.9+5932, that we found to be a likely low-power Active Galactic Nucleus at z = 0:1143 \pm 0:0002. If this second object is of blazar type, it could easily account for the observed gamma-ray photon flux. However, this is not confirmed at present, thus rendering still open the star system TYC 3683-985-1 as an alternative counterpart candidate to the Fermi source.Comment: 8 pages; 10 figures; accepted for publication in Astronomy & Astrophysic

Discrete breathers in dissipative lattices

We study the properties of discrete breathers, also known as intrinsic localized modes, in the one-dimensional Frenkel-Kontorova lattice of oscillators subject to damping and external force. The system is studied in the whole range of values of the coupling parameter, from C=0 (uncoupled limit) up to values close to the continuum limit (forced and damped sine-Gordon model). As this parameter is varied, the existence of different bifurcations is investigated numerically. Using Floquet spectral analysis, we give a complete characterization of the most relevant bifurcations, and we find (spatial) symmetry-breaking bifurcations which are linked to breather mobility, just as it was found in Hamiltonian systems by other authors. In this way moving breathers are shown to exist even at remarkably high levels of discreteness. We study mobile breathers and characterize them in terms of the phonon radiation they emit, which explains successfully the way in which they interact. For instance, it is possible to form ``bound states'' of moving breathers, through the interaction of their phonon tails. Over all, both stationary and moving breathers are found to be generic localized states over large values of $C$, and they are shown to be robust against low temperature fluctuations.Comment: To be published in Physical Review

Integral field optical spectroscopy of a representative sample of ULIRGs: II. Two-dimensional kpc-scale extinction structure

We investigate the two-dimensional kpc-scale structure of the extinction in a representative sample of local ULIRGs using the Halpha/Hbeta line ratio.We use optical integral field spectroscopy obtained with the INTEGRAL instrument at the William Herschel Telescope. Complementary optical and near-IR high angular resolution HST images have also been used. The extinction exhibits a very complex and patchy structure in ULIRGs on kpc scales, from basically transparent regions to others deeply embedded in dust (Av~0.0 to Av~8.0 mag). Nuclear extinction covers a broad range in Av from 0.6 to 6 mag, 69% of the nuclei having Av>2.0 mag. Extinction in the external regions is substantially lower than in the nuclei with 64% of the ULIRGs in the sample having median Av of less than 2 mag for the entire galaxy. While post-coalescence nuclei tend to cluster around Av values of 2 to 3 mag, pre-coalescence nuclei appear more homogeneously distributed over the entire 0.4 mag <Av< 7.7 mag range. For the average extinction (Av~2.0 derived for the ULIRGs of the sample, the ratio of the de-reddened to observed SFR values is 6. The extinction-corrected, Halpha-based SFR ranges from 10 to 300 Msun/yr. For only 28% of the cases the de-reddened SFR is <20 Msun/yr, whereas for the observed SFR this percentage increases to 72%. The IR-based SFR is always higher than the optical-based one, with differences ranging from about 2 to up to 30. The nuclear observed SFR has an average contribution to the total one of 16% for the entire sample. Once corrected for extinction, the average value becomes 31%. Because of mostly extinction effects, the optical (I-band) half-light radius in the sample galaxies is on average a factor 2.3 larger than the corresponding near-IR (H-band) value.Comment: To appear in A&

The unit cell parameters and electrical conduction of some new solar cell materials

New materials are being investigated that could yield solar energy conversion efficiency comparable in device production cost to the standard electric power generators. Continuing with this effort, in recent years solar cells with efficiency close to 20 %, prepared with alloys of CuIn1-xGaxSe2 has been reported. It is shown that the normalized values of the unit cell parameters a and c of the ordered defect compounds with respect to their corresponding 1:1:2 phase, that are formed on the In(Ga)-rich side of the pseudo-binary phase diagram of [Cu2(Se,Te)]X–[(In2,Ga2)(Se3,Te3)]1-X, vary linearly with the effective cation radius reff for the tellurides and selenides of Cu-In and Cu-Ga systems. This universal relationship has important significance. The unit cell dimensions of other chalcopyriterelated ordered defect compounds of these systems that have not been synthesized so far can be estimated. Because of the presence of shallow donor and acceptor levels due to the presence of cation-cation disorders in Cu(In,Ga)Se2 and ordered defects in Cu(In,Ga)3(Se,Te)5, the impurity band in these compounds starts to form between liquid helium and nitrogen temperatures. This permits to study the variable range hopping (VRH) conduction in the impurity band over a much wider temperature range

Effect of the Introduction of Impurities on the Stability Properties of Multibreathers at Low Coupling

sing a theorem dubbed the {\em Multibreather Stabiliy Theorem} [Physica D 180 (2003) 235-255] we have obtained the stability properties of multibreathers in systems of coupled oscillators with on-site potentials, with an inhomogeneity. Analytical results are obtained for 2-site, 3-site breathers, multibreathers, phonobreathers and dark breathers. The inhomogeneity is considered both at the on-site potential and at the coupling terms. All the results have been checked numerically with excellent agreement. The main conclusion is that the introduction of a impurity does not alter the stability properties.Comment: 20 pages, 9 figure

Thermal diagnostic of the Optical Window on board LISA Pathfinder

Vacuum conditions inside the LTP Gravitational Reference Sensor must comply with rather demanding requirements. The Optical Window (OW) is an interface which seals the vacuum enclosure and, at the same time, lets the laser beam go through for interferometric Metrology with the test masses. The OW is a plane-parallel plate clamped in a Titanium flange, and is considerably sensitive to thermal and stress fluctuations. It is critical for the required precision measurements, hence its temperature will be carefully monitored in flight. This paper reports on the results of a series of OW characterisation laboratory runs, intended to study its response to selected thermal signals, as well as their fit to numerical models, and the meaning of the latter. We find that a single pole ARMA transfer function provides a consistent approximation to the OW response to thermal excitations, and derive a relationship with the physical processes taking place in the OW. We also show how system noise reduction can be accomplished by means of that transfer function.Comment: 20 pages, 14 figures; accepted for publication in Class. Quantum Gra

Integral Field Spectroscopy based H\alpha\ sizes of local Luminous and Ultraluminous Infrared Galaxies. A Direct Comparison with high-z Massive Star Forming Galaxies

Aims. We study the analogy between local U/LIRGs and high-z massive SFGs by comparing basic H{\alpha} structural characteristics, such as size, and luminosity (and SFR) surface density, in an homogeneous way (i.e. same tracer and size definition, similar physical scales). Methods. We use Integral Field Spectroscopy based H{\alpha} emission maps for a representative sample of 54 local U/LIRGs (66 galaxies). From this initial sample we select 26 objects with H{\alpha} luminosities (L(H{\alpha})) similar to those of massive (i.e. M\ast \sim 10^10 M\odot or larger) SFGs at z \sim 2, and observed on similar physical scales. Results. The sizes of the H{\alpha} emitting region in the sample of local U/LIRGs span a large range, with r1/2(H{\alpha}) from 0.2 to 7 kpc. However, about 2/3 of local U/LIRGs with Lir > 10^11.4 L\odot have compact H{\alpha} emission (i.e. r1/2 < 2 kpc). The comparison sample of local U/LIRGs also shows a higher fraction (59%) of objects with compact H{\alpha} emission than the high-z sample (25%). This gives further support to the idea that for this luminosity range the size of the star forming region is a distinctive factor between local and distant galaxies of similar SF rates. However, when using H{\alpha} as a tracer for both local and high-z samples, the differences are smaller than the ones recently reported using a variety of other tracers. Despite of the higher fraction of galaxies with compact H{\alpha} emission, a sizable group (\sim 1/3) of local U/LIRGs are large (i.e. r1/2 > 2 kpc). These are systems showing pre-coalescence merger activity and they are indistinguishable from the massive high-z SFGs galaxies in terms of their H{\alpha} sizes, and luminosity and SFR surface densities.Comment: Accepted for publication in A&A. (!5 pages, 7 figures, 2 tables

Gene body DNA methylation in seagrasses: inter- and intraspecific differences and interaction with transcriptome plasticity under heat stress

The role of DNA methylation and its interaction with gene expression and transcriptome plasticity is poorly understood, and current insight comes mainly from studies in very few model plant species. Here, we study gene body DNA methylation (gbM) and gene expression patterns in ecotypes from contrasting thermal environments of two marine plants with contrasting life history strategies in order to explore the potential role epigenetic mechanisms could play in gene plasticity and responsiveness to heat stress. In silico transcriptome analysis of CpG(O/E) ratios suggested that the bulk of Posidonia oceanica and Cymodocea nodosa genes possess high levels of intragenic methylation. We also observed a correlation between gbM and gene expression flexibility: genes with low DNA methylation tend to show flexible gene expression and plasticity under changing conditions. Furthermore, the empirical determination of global DNA methylation (5-mC) showed patterns of intra and inter-specific divergence that suggests a link between methylation level and the plants' latitude of origin and life history. Although we cannot discern whether gbM regulates gene expression or vice versa, or if other molecular mechanisms play a role in facilitating transcriptome responsiveness, our findings point to the existence of a relationship between gene responsiveness and gbM patterns in marine plants

Fluoride Dentifrice Overcomes the Lower Resistance of Fluorotic Enamel to Demineralization

We evaluated if the low resistance of fluorotic enamel to demineralization could be overcome by fluoride dentifrice (FD) treatment. Paired enamel slabs of sound and fluorotic enamel (n = 20/group) from human teeth presenting Thylstrup and Fejerskov index (TF) scores from 0 to 4 were obtained. Half of the anatomic surface of the enamel slabs was isolated and used as a control (baseline) regarding enamel mineralization and fluoride concentration. The slabs were submitted to a pH-cycling model simulating a high cariogenic challenge, and 2×/day they were treated with placebo dentifrice (PD) or FD (1,100 µg F/g, as NaF). After 10 days, the slabs were cut into two halves. Enamel demineralization was evaluated by cross-sectional microhardness in one half, and the fluoride formed (FF) concentration was determined in the other half. For statistical analysis, the data on net demineralization area (ΔΔS) and FF (µg F/g) were grouped into TF0, TF1–2, and TF3–4, and analyzed by two-way ANOVA followed by Tukey’s test (α = 5%). The factors studied were TF (0, 1–2, and 3–4) and dentifrice treatment (PD or FD). The effect of the factors was statistically significant for ΔΔS and FF (p TF1–2 > TF0 (p 0.05) when FD was used. Regarding FF, the groups treated with PD did not differ (p > 0.05), but the greatest (p < 0.05) FF concentration was found in group TF3–4 treated with FD. These findings suggest that the higher susceptibility of fluorotic enamel to demineralization lesions is decreased by the use of FD