Moisture activation and carbon use efficiency of soil microbial communities along an aridity gradient in the Atacama Desert

Due to their extreme aridity, high rate of UV irradiation and low soil carbon (C) content, the soils of the Atacama Desert represent one of the world's most hostile environments for microbial life and its survival. Although infrequent, climatic conditions may, however, prevail which temporarily remove these stresses and allow life to briefly flourish. In this study we investigated the response of soil microbial communities to water and C availability across an aridity gradient (semi-arid, arid, hyper-arid) within the Atacama Desert. We simulated the impact of hyper-dry spells, humid fogs and precipitation events on the activation of the microbial community and the subsequent mineralization of low (glucose) and high (plant residues) molecular weight C substrates. Our results showed that mineralization rate followed the trend: semi-arid > arid > hyper-arid. Some glucose mineralization was apparent under hyper-arid conditions (water activity, aw = 0.05), although this was 10-fold slower than under humid conditions and ca. 200-fold slower than under wet conditions. A lag phase in CO2 production after glucose-C addition in the hyper-arid soils suggested that mineralization was limited by the low microbial biomass in these soils. No lag phase was apparent in the corresponding semi-arid or arid soils. In contrast, the breakdown of the plant residues was initially much slower than for glucose and involved a much longer lag phase in all soils, suggesting that mineralization was limited by low exoenzyme activity, particularly in the humid and hyper-dry soils. Our results also showed that microbial C use efficiency followed the trend: hyper-arid > arid > semi-arid. In conclusion, we have shown that even under hyper-arid conditions, very low levels of microbial activity and C turnover do occur. Further, the microbial communities are capable of rapidly responding to available C once water becomes more abundant, however, this response is both biomass and metabolically limited in hyper-arid soils

Detectable contributions of colloids to soil P and C content in arid and hyperarid region of the Atacama (Chile)

Atacama Desert is mainly known as the driest place on Earth where life has been developed under arid to hyper arid conditions since Oligocene-Miocene. Therefore, soils of Atacama contain fingerprints of past and present life which might be used as an analog to study the evolution of life under equivalent arid conditions, like Mars. In this study, we quantify the colloidal phosphorus and carbon distribution in the first 10 cm of soil profile along an altitudinal transect. Samples were taken along a transect in the region of Quebrada Aroma spanning from the arid Percordillera of the Andes (2720 m a.s.l.) towards the hyper arid core of the desert (1340 m a.s.l.). Water dispersible colloids (WDC) were separated and measured using the field-flow-field fractionation (FFF) method and subsequently their Corg and P content were characterized and quantified by detectors (DLS, ICP-MS, UV, OCD, fluorescence). Data was compared to total C, P and (available) Olsen-P also measured in the samples. The Olsen-P (available-P) varied within the Aroma transect from ca. 2 to 8 mg P kg-1, but was not related to either altitude or depth in the upper soil (0-10 cm). Colloidal P contents ranged from <0.1 to 4 mg P kg-1 soil, with increasing trend from low to higher elevations. Thereby, suggesting an increasing proportion of the available P potential being present in the WDC fraction. The Colloidal Corg content of the Aroma transect did range from 65 to 90 (for sites 2020 to 1340m) and 110 mg Corg kg-1 soil WDC (2720 m). Colloidal Corg content as a function of the altitude showed a similar trend to the Corg content of the soils: the highest colloidal Corg content was found at 2720 m. The proportion of soil Corg within the colloidal fraction was up to 6% of the bulk soil organic matter (OM) content, as the OM content was intensively enriched in the colloidal fraction. Further quantification of phosphorus and carbon content in WDC in deeper part of soil is required to obtain a more comprehensive view of role of colloidal inputs and dynamics in the Atacama Desert

High-Pressure Amorphous Nitrogen

The phase diagram and stability limits of diatomic solid nitrogen have been explored in a wide pressure--temperature range by several optical spectroscopic techniques. A newly characterized narrow-gap semiconducting phase $\eta$ has been found to exist in a range of 80--270 GPa and 10--510 K. The vibrational and optical properties of the $\eta$ phase produced under these conditions indicate that it is largely amorphous and back transforms to a new molecular phase. The band gap of the $\eta$ phase is found to decrease with pressure indicating possible metallization by band overlap above 280 GPa.Comment: 5 pages, 4 figure

The rise and fall of methanotrophy following a deepwater oil-well blowout

The blowout of the Macondo oil well in the Gulf of Mexico in April 2010 injected up to 500,000 tonnes of natural gas, mainly methane, into the deep sea1. Most of the methane released was thought to have been consumed by marine microbes between July and August 20102, 3. Here, we report spatially extensive measurements of methane concentrations and oxidation rates in the nine months following the spill. We show that although gas-rich deepwater plumes were a short-lived feature, water column concentrations of methane remained above background levels throughout the rest of the year. Rates of microbial methane oxidation peaked in the deepwater plumes in May and early June, coincident with a rapid rise in the abundance of known and new methane-oxidizing microbes. At this time, rates of methane oxidation reached up to 5,900 nmol l−1 d−1—the highest rates documented in the global pelagic ocean before the blowout4. Rates of methane oxidation fell to less than 50 nmol l−1 d−1 in late June, and continued to decline throughout the remainder of the year. We suggest the precipitous drop in methane consumption in late June, despite the persistence of methane in the water column, underscores the important role that physiological and environmental factors play in constraining the activity of methane-oxidizing bacteria in the Gulf of Mexico

Practical Application of Methanol-Mediated Mutualistic Symbiosis between Methylobacterium Species and a Roof Greening Moss, Racomitrium japonicum

Bryophytes, or mosses, are considered the most maintenance-free materials for roof greening. Racomitrium species are most often used due to their high tolerance to desiccation. Because they grow slowly, a technology for forcing their growth is desired. We succeeded in the efficient production of R. japonicum in liquid culture. The structure of the microbial community is crucial to stabilize the culture. A culture-independent technique revealed that the cultures contain methylotrophic bacteria. Using yeast cells that fluoresce in the presence of methanol, methanol emission from the moss was confirmed, suggesting that it is an important carbon and energy source for the bacteria. We isolated Methylobacterium species from the liquid culture and studied their characteristics. The isolates were able to strongly promote the growth of some mosses including R. japonicum and seed plants, but the plant-microbe combination was important, since growth promotion was not uniform across species. One of the isolates, strain 22A, was cultivated with R. japonicum in liquid culture and in a field experiment, resulting in strong growth promotion. Mutualistic symbiosis can thus be utilized for industrial moss production

Fast Growth Increases the Selective Advantage of a Mutation Arising Recurrently during Evolution under Metal Limitation

Understanding the evolution of biological systems requires untangling the molecular mechanisms that connect genetic and environmental variations to their physiological consequences. Metal limitation across many environments, ranging from pathogens in the human body to phytoplankton in the oceans, imposes strong selection for improved metal acquisition systems. In this study, we uncovered the genetic and physiological basis of adaptation to metal limitation using experimental populations of Methylobacterium extorquens AM1 evolved in metal-deficient growth media. We identified a transposition mutation arising recurrently in 30 of 32 independent populations that utilized methanol as a carbon source, but not in any of the 8 that utilized only succinate. These parallel insertion events increased expression of a novel transporter system that enhanced cobalt uptake. Such ability ensured the production of vitamin B12, a cobalt-containing cofactor, to sustain two vitamin B12–dependent enzymatic reactions essential to methanol, but not succinate, metabolism. Interestingly, this mutation provided higher selective advantages under genetic backgrounds or incubation temperatures that permit faster growth, indicating growth-rate–dependent epistatic and genotype-by-environment interactions. Our results link beneficial mutations emerging in a metal-limiting environment to their physiological basis in carbon metabolism, suggest that certain molecular features may promote the emergence of parallel mutations, and indicate that the selective advantages of some mutations depend generically upon changes in growth rate that can stem from either genetic or environmental influences

Discovery and population genomics of structural variation in a songbird genus

Structural variation (SV) constitutes an important type of genetic mutations providing the raw material for evolution. Here, we uncover the genome-wide spectrum of intra- and interspecific SV segregating in natural populations of seven songbird species in the genus Corvus. Combining short-read (N = 127) and long-read re-sequencing (N = 31), as well as optical mapping (N = 16), we apply both assembly- and read mapping approaches to detect SV and characterize a total of 220,452 insertions, deletions and inversions. We exploit sampling across wide phylogenetic timescales to validate SV genotypes and assess the contribution of SV to evolutionary processes in an avian model of incipient speciation. We reveal an evolutionary young (~530,000 years) cis-acting 2.25-kb LTR retrotransposon insertion reducing expression of the NDP gene with consequences for premating isolation. Our results attest to the wealth and evolutionary significance of SV segregating in natural populations and highlight the need for reliable SV genotyping

Novel facultative Methylocella strains are active methane consumers at terrestrial natural gas seeps

Natural gas seeps contribute to global climate change by releasing substantial amounts of the potent greenhouse gas methane and other climate-active gases including ethane and propane to the atmosphere. However, methanotrophs, bacteria capable of utilising methane as the sole source of carbon and energy, play a significant role in reducing the emissions of methane from many environments. Methylocella-like facultative methanotrophs are a unique group of bacteria that grow on other components of natural gas (i.e. ethane and propane) in addition to methane but a little is known about the distribution and activity of Methylocella in the environment. The purposes of this study were to identify bacteria involved in cycling methane emitted from natural gas seeps and, most importantly, to investigate if Methylocella-like facultative methanotrophs were active utilisers of natural gas at seep sites