How Messages about COVID-19 May Have Affected People’s Sense of Threat and Mental Health

COVID-19 has had profound effects on many physical, mental and social aspects of health. This study examined people’s fears and concerns about the virus, their experiences of being subjected to expert opinion and media portrayals of suffering from the virus, experiences of lockdown, and hopes and doubts for the future. We also examined how these relate to symptoms of depression, anxiety and stress. 180 participants completed an online survey exploring the themes of the study. Results suggest that in addition to concerns of catching the virus themselves, participants were more concerned with passing it on to others. People found information provided by experts at times contradictory and confusing. There was a strong endorsement that the media exploited suffering and while there was a high desire to move to a more compassionate ‘caring and sharing world’, there were strong doubts that this would happen or that politicians would be able to navigate to that. More research is needed on how to present information about high levels of threat, tragic events and processes in order to avoid adding to, rather than reducing mental health difficulties, and generating unhelpful behaviours

Cloning, sequencing, and characterization of the hexahydro-1,3,5-trinitro-1,3,5-triazine degradation gene cluster from Rhodococcus rhodochrous

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a high explosive which presents an environmental hazard as a major land and groundwater contaminant. Rhodococcus rhodochrous strain 11Y was isolated from explosive contaminated land and is capable of degrading RDX when provided as the sole source of nitrogen for growth. Products of RDX degradation in resting-cell incubations were analyzed and found to include nitrite, formaldehyde, and formate. No ammonium was excreted into the medium, and no dead-end metabolites were observed. The gene responsible for the degradation of RDX in strain 11Y is a constitutively expressed cytochrome P450-like gene, xpLA, which is found in a gene cluster with an adrenodoxin reductase homologue, xplB. The cytochrome P450 also has a flavodoxin domain at the N terminus. This study is the first to present a gene which has been identified as being responsible for RDX biodegradation. The mechanism of action of XplA on RDX is thought to involve initial denitration followed by spontaneous ring cleavage and mineralization

Implementation of the Explicit Group Iterative Method for Solving Image Blurring Problem using Non-Linear Diffusion Equations

Diffusion equations have been known to solve various image processing problems. This study employs the diffusion equations as the partial difference equations (PDEs)-based image processing techniques for image blurring which also can be refer as the process of image smoothing. The solutions of diffusion equations were obtained using the iterative algorithms and thereafter applied in the image blurring processes. The images were blurred without destroying the crucial information of an image that need to be preserve such as sharp edges, lines and shapes as the diffusion occurs inside the image locations, where the images with different sizes were tested. In terms of performance comparison, the standard point Gauss-Seidel and two-point Explicit Group (2-EG) methods were considered to produce the same quality image of classical point iterative method which is Jacobi. The numerical results showed that 2-EG iterative method capable to smooth the inner region of the images faster compared to the standard point iterative method. It was shown that the 2-EG iterative method more efficient in reducing the number of iterations and computational time than the standard point iterative method

First estimates of entanglement rate of humpback whales Megaptera novaeangliae observed in coastal Icelandic waters

Publisher's version (útgefin grein)Entanglement in fishing gear is a significant anthropogenic source of large whale injury and mortality. Although entanglements have been reported in the eastern North Atlantic, their frequency has not been previously estimated. This study used systematic scar analysis to estimate the frequency of non-lethal entanglements among individual humpback whales Megaptera novaeangliae off coastal Iceland, from 2005 through 2017. Images of the caudal peduncle and fluke insertions of 379 individuals were analyzed for wrapping injuries and notches known to be indicative of entanglement. The results indicated that at least 24.8% (n = 94, 95% confidence intervals [95% CI]: 20.5-29.1%) of individuals had a history of prior entanglement when first encountered. Depending on the metric used, the whales subsequently acquired new entanglement-related injuries at an average rate of 1.9% (95% CI: 0.6-3.2%) or 16.3% (95% CI: 3.0-29.3%) per year, with no statistically significant change over time. Furthermore, evidence suggests that at least some entanglements occurred locally. Observations of whales with gear still entangling the body confirmed the patterns of injury studied here. These results are lower than scar-based estimates from other parts of the world, but the cause of this difference requires further study. Scar-based methods underestimate the frequency of prior entanglement because some injuries heal beyond recognition, do not involve the caudal peduncle, and may occur on whales that die before they are studied. Long-term monitoring of humpback whale entanglement in Icelandic coastal waters is important for evaluating the local effects of fisheries, as well as the viability of the endangered Cape Verde breeding population.This work was funded in part by a National Geographic Explorer Grant awarded by the National Geographic Society, a PhD sponsorship grant awarded by Gentle Giants Whale Watching, and a Doctoral Grant awarded by Rannís Icelandic Research Fund. We thank all the students at the University of Iceland’s Húsavík Research Center for contributing data, the Faxaflói Ceta - cean Research volunteers (in Húsavík and Reykjavík), and all the whale-watching companies in Iceland who showed interest in the project and contributed photographs and/or space onboard their vessels for data collection. Furthermore, we thank the anonymous reviewers, who provided valuable input into the manuscript. Photographs used in the figures are copyright of University of Iceland (Figs. 2,3,4a1,b,c, 5 & 6a,b,d) Elding Adventures at Sea (Fig. 6c), and Charlie Frank Lavin (Elding Whale Watching Akureyri) (Fig. 4a2).Peer Reviewe

Three applications of path integrals: equilibrium and kinetic isotope effects, and the temperature dependence of the rate constant of the [1,5] sigmatropic hydrogen shift in (Z)-1,3-pentadiene

Recent experiments have confirmed the importance of nuclear quantum effects even in large biomolecules at physiological temperature. Here we describe how the path integral formalism can be used to describe rigorously the nuclear quantum effects on equilibrium and kinetic properties of molecules. Specifically, we explain how path integrals can be employed to evaluate the equilibrium (EIE) and kinetic (KIE) isotope effects, and the temperature dependence of the rate constant. The methodology is applied to the [1,5] sigmatropic hydrogen shift in pentadiene. Both the KIE and the temperature dependence of the rate constant confirm the importance of tunneling and other nuclear quantum effects as well as of the anharmonicity of the potential energy surface. Moreover, previous results on the KIE were improved by using a combination of a high level electronic structure calculation within the harmonic approximation with a path integral anharmonicity correction using a lower level method.Comment: 9 pages, 4 figure

Neutron cryo-crystallography captures the protonation state of ferryl heme in a peroxidase

Heme enzymes activate oxygen through formation of transient iron-oxo (ferryl) intermediates of the heme iron. A long-standing question has been the nature of the iron-oxygen bond and, in particular, the protonation state. We present neutron structures of the ferric derivative of cytochrome c peroxidase and its ferryl intermediate; these allow direct visualization of protonation states. We demonstrate that the ferryl heme is an Fe(IV)=O species and is not protonated. Comparison of the structures shows that the distal histidine becomes protonated on formation of the ferryl intermediate, which has implications for the understanding of O–O bond cleavage in heme enzymes. The structures highlight the advantages of neutron cryo-crystallography in probing reaction mechanisms and visualizing protonation states in enzyme intermediates

A Multilevel Multidimensional Finite Mixture Item Response Model to Cluster Respondents and Countries: The Forms of Self-Criticising/Attacking and Self-Reassuring Scale

The aim of this study was to test the multilevel multidimensional finite mixture item response model of the Forms of Self-Criticising/Attacking and Self-Reassuring Scale (FSCRS) to cluster respondents and countries from 13 samples (N = 7,714) and from 12 countries. The practical goal was to learn how many discrete classes there are on the level of individuals (i.e., how many cut-offs are to be used) and countries (i.e., the magnitude of similarities and dissimilarities among them). We employed the multilevel multidimensional finite mixture approach which is based on an extended class of multidimensional latent class Item Response Theory (IRT) models. Individuals and countries are partitioned into discrete latent classes with different levels of self-criticism and self-reassurance, taking into account at the same time the multidimensional structure of the construct. This approach was applied to the analysis of the relationships between observed characteristics and latent trait at different levels (individuals and countries), and across different dimensions using the three-dimensional measure of the FSCRS. Results showed that respondents' scores were dependent on unobserved (latent class) individual and country membership, the multidimensional structure of the instrument, and justified the use of a multilevel multidimensional finite mixture item response model in the comparative psychological assessment of individuals and countries. Latent class analysis of the FSCRS showed that individual participants and countries could be divided into discrete classes. Along with the previous findings that the FSCRS is psychometrically robust we can recommend using the FSCRS for measuring self-criticism

Accuracy of diagnosis and classification of COPD in primary and specialist nurse-led respiratory care in Rotherham, UK : a cross-sectional study

Background: Studies have suggested that chronic obstructive pulmonary disease (COPD) is commonly misdiagnosed and misclassified in primary care, but less is known about the quality of diagnosis in specialist respiratory care. Aims: To measure the accuracy of COPD diagnosis and classification of airway obstruction in primary care and at a specialist respiratory centre, and to explore associations between misdiagnosis and misclassification and a range of explanatory factors. Methods: Data were obtained for 1,205 referrals to a specialist respiratory centre between 2007 and 2010. Standard analysis methods were used. Results: The majority of patients were referred for pulmonary rehabilitation (676/1,205, 56%). Of 1,044 patients with a primary care diagnosis of COPD, 211 (20%) had spirometry inconsistent with COPD. In comparison, of 993 specialist centre diagnoses, 65 (6.5%) had inconsistent spirometry. There was poor agreement between the airflow obstruction grade recorded on the referral and that based on spirometry (kappa=0.26, n=448), whereas agreement between the respiratory centre assessment of airflow obstruction and spirometry was good (kappa=0.88, n=1,016). Referral by practice nurse was associated with accuracy of airflow obstruction classification in primary care (OR 1.85, 95% CI 1.33 to 2.57). Males were more likely than females to have an accurate specialist care classification of airway obstruction (OR 1.40, 95% CI 1.01 to 1.93). Grade of airway obstruction changed between referral and assessment in 56% of cases. Conclusions: In primary care, a proportion of patients diagnosed with COPD do not have COPD, and misclassification of grade of airflow obstruction is common. Misdiagnosis and misclassification is less common in the specialist care setting of BreathingSpace

Exploring the mechanism of tryptophan 2,3-dioxygenase

The haem proteins TDO (tryptophan 2,3-dioxygenase) and IDO (indoleamine 2,3-dioxygenase) are specific and powerful oxidation catalysts that insert one molecule of dioxygen into L-tryptophan in the first and rate-limiting step in the kynurenine pathway. Recent crystallographic and biochemical analyses of TDO and IDO have greatly aided our understanding of the mechanisms employed by these enzymes in the binding and activation of dioxygen and tryptophan. In the present paper, we briefly discuss the function, structure and possible catalytic mechanism of these enzymes