721 research outputs found

    The effect of spatial structure in adaptive evolution

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    We study the dynamics of adaptation in a spatially structured population. The model assumes local competition for replication, where each organism interacts only with its nearest neighbors and is inspired by experimental methods that can be used to study the process of adaptive evolution in microbes. In such experiments microbial populations are grown on petri dishes and allowed to adapt by serial passage. We compare the rate of adaptation in a structured population where the structure is maintained intact to those where movement of individuals can occur. We observe that the rate of adaptive evolution is higher and the mean effect of fixed beneficial mutations is lower in intact structures than in structures with mixing.The original version is available at www.springerlink.co

    Conditional Image-Text Embedding Networks

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    This paper presents an approach for grounding phrases in images which jointly learns multiple text-conditioned embeddings in a single end-to-end model. In order to differentiate text phrases into semantically distinct subspaces, we propose a concept weight branch that automatically assigns phrases to embeddings, whereas prior works predefine such assignments. Our proposed solution simplifies the representation requirements for individual embeddings and allows the underrepresented concepts to take advantage of the shared representations before feeding them into concept-specific layers. Comprehensive experiments verify the effectiveness of our approach across three phrase grounding datasets, Flickr30K Entities, ReferIt Game, and Visual Genome, where we obtain a (resp.) 4%, 3%, and 4% improvement in grounding performance over a strong region-phrase embedding baseline.Comment: ECCV 2018 accepted pape

    RATES OF FITNESS DECLINE AND REBOUND SUGGEST PERVASIVE EPISTASIS

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    Unraveling the factors that determine the rate of adaptation is a major question in evolutionary biology. One key parameter is the effect of a new mutation on fitness, which invariably depends on the environment and genetic background. The fate of a mutation also depends on population size, which determines the amount of drift it will experience. Here, we manipulate both population size and genotype composition and follow adaptation of 23 distinct Escherichia coli genotypes. These have previously accumulated mutations under intense genetic drift and encompass a substantial fitness variation. A simple rule is uncovered: the net fitness change is negatively correlated with the fitness of the genotype in which new mutations appear--a signature of epistasis. We find that Fisher's geometrical model can account for the observed patterns of fitness change and infer the parameters of this model that best fit the data, using Approximate Bayesian Computation. We estimate a genomic mutation rate of 0.01 per generation for fitness altering mutations, albeit with a large confidence interval, a mean fitness effect of mutations of -0.01, and an effective number of traits nine in mutS(-) E. coli. This framework can be extended to confront a broader range of models with data and test different classes of fitness landscape models.LAO/ITQB, FCT, Danish Council for Independent Research

    Do parental reflective functioning and parental competence affect the socioemotional adjustment of children?

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    Parental reflective functioning refers to the parents’ ability to reflect on their children’s mental states, and is increasingly considered to be a key feature of competent parenting. However, to date, no study has empirically investigated this assumption. The main objective of the present study was therefore to investigate the mediating role of parental competence in the relationship between parental reflective functioning and children’s socioemotional adjustment. We also investigated whether these relationships were similar for mothers and fathers. The study was carried out in a sample of 433 mothers and 113 fathers of infants aged from 2 to 36 months. Participants had to complete the Spanish version of the Perceived Parental Competence Scale, the Parental Reflective Functioning Questionnaire and the Ages & Stages Questionnaire. Results showed, as expected, that parental competence mediated the association between parental reflective functioning and infants’ emotional adjustment. Multigroup analysis supported the invariance of the structural model across mothers and fathers. The implications of these results for pediatric and primary care are discussed

    Rates of transposition in Escherichia coli

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    The evolutionary role of transposable elements (TEs) is still highly controversial. Two key parameters, the transposition rate (u and w, for replicative and non-replicative transposition) and the excision rate (e) are fundamental to understanding their evolution and maintenance in populations. We have estimated u, w and e for six families of TEs (including eight members: IS1, IS2, IS3, IS4, IS5, IS30, IS150 and IS186) in Escherichia coli, using a mutation accumulation (MA) experiment. In this experiment, mutations accumulate essentially at the rate at which they appear, during a period of 80 500 (1610 generations × 50 lines) generations, and spontaneous transposition events can be detected. This differs from other experiments in which insertions accumulated under strong selective pressure or over a limited genomic target. We therefore provide new estimates for the spontaneous rates of transposition and excision in E. coli. We observed 25 transposition and three excision events in 50 MA lines, leading to overall rate estimates of u ∼ 1.15 × 10(-5), w ∼ 4 × 10(-8) and e ∼ 1.08 × 10(-6) (per element, per generation). Furthermore, extensive variation between elements was found, consistent with previous knowledge of the mechanisms and regulation of transposition for the different elements.Natural Sciences and Engineering Research Council of Canada, LAO/ITQB, FCT

    High-temperature wettability in hard materials: Comparison of systems with different binder/carbide phases and evaluation of C addition

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    Metal-ceramic wettability is a decisive parameter in the high-temperature sintering of hard materials. Wettability tests enable the study of this property with minimum material waste, especially useful in the search of alternative systems to WC-Co hardmetals. In this investigation, Fe-based binders – FeNiCr and FeCrAl – were tested on Ti(C,N) and WC substrates, aiming to assess: the high-temperature interactions, the dissolutive character of the liquid phase and the nature of the interphases generated, and the influence on sintering behaviour. As a result, FeNiCr led to excellent wetting scenarios for both ceramics, whereas FeCrAl alloys induced the formation of aluminium oxides. The effect of C addition on wettability was also evaluated, resulting in an improvement of this property by the inclusion of this element in the binder phase. Inspection of the microstructures resultant from powder metallurgy processing of the different configurations confirmed their excellent correlation with wettability results. As a consequence, the effectivity of this technique as a model of the sintering scenario could be asserted.The current investigation was supported by the Spanish Government (Agencia Estatal de Investigación) and European Union through the project AEI/10.13039/501100011033 (PID2019-106631GB-C41/C43) and grants BES-2016-077340 and Margarita Salas, as well as the Regional Government of Madrid through the program ADITIMAT, ref. S2018/NMT-4411. The authors would like to acknowledge and thank CERATIZIT Group (Mamer, Luxembourg), for their contribution to the processing of the hard materials, and Johannes Pötschke, from Fraunhofer Institute for Ceramic Technologies and Systems IKTS, for providing binderless WC substrates. Funding for APC: Universidad Carlos III de Madrid (Read & Publish Agreement CRUE-CSIC 2022)

    Characterization of novel W alloys produced by HIP

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    W and W alloys containing 0.5 Wt% Y(2)O(3), x wt% Ti and (x wt% Ti + 0.5 Wt% Y₂O₃) have been prepared, x 2 or 4. Elemental powders were blended or ball milled, canned, degassed and finally consolidated by a two-stage HIP process under a pressure of 195 MPa. It is found that Ti addition favours the densification attaining a fully dense material. XRD, SEM and EDX analyses of he material with Ti addition reveal the formation of a microstructure consisting of tungsten particles embedded in a W-Ti matrix. The microhardness of these materials increased noticeably with the titanium content

    A single day of bed rest, irrespective of energy balance, does not affect skeletal muscle gene expression or insulin sensitivity

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    This is the author accepted manuscript. The final version is available from the publisher via the DOI in this record.The initial metabolic and molecular events that underpin disuse-induced skeletal muscle deconditioning, and the contribution of energy balance, remain to be investigated. Ten young, healthy males (age: 25 ± 1 y; BMI: 25.3 ± 0.8 kg m-2 ) underwent three 24 h laboratory-based experimental periods in a randomized, crossover manner: 1) controlled habitual physical activity with an energy-balanced diet (CON); 2) strict bed rest with a diet to maintain energy balance (BR-B); and 3) strict bed rest with a diet identical to CON, consequently resulting in positive energy balance. Continuous glucose monitoring was performed throughout each visit, with vastus lateralis muscle biopsies and an oral glucose tolerance test performed before and after. In parallel with muscle samples collected from a previous 7-day bed rest study, biopsies were used to examine expression of genes associated with the regulation of muscle mass and insulin sensitivity. A single day of bed rest, irrespective of energy balance, did not lead to overt changes in whole-body substrate oxidation, indices of insulin sensitivity (i.e. HOMA-IR (BR-B: from 2.7 ± 1.7 to 3.1 ± 1.5, P > 0.05), Matsuda (BR-B: from 5.9 ± 3.3 to 5.2 ± 2.9, P > 0.05)), or 24 h glycaemic control/variability compared to CON. Seven days of bed rest led to ∼30-55% lower expression of genes involved in insulin signalling, lipid storage/oxidation, and muscle protein breakdown, whereas no such changes were observed after one day of bed rest. In conclusion, more than one day of physical inactivity is required to observe the insulin resistance and robust skeletal muscle transcriptional responses associated with bed rest and consequent alterations in energy balance.BTW received internal funding from the College of Life and Environmental Sciences, University of Exeter, to support this project. None of the other authors received funding from any funding agency in the public, commercial or not-for-profit sectors to conduct this research
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