Mercury Concentrations in Fishes of the Madeira River: Results and Recomendations for Human Consumption

Samples of eleven fish species were collected during September and October of 1991 in the gold mining area of Cachoeira de Teotônio and in the control area Guajará-Mirim, along the Madeira River, (Rondônia, Brazil) and anaiized for total mercury by cold vapor atomic absorption spectrofotometry. Almost all fish predators from the gold mining area had mercury concentrations above the maximal level of 0.5 ug.g"1, permitted for human consumption by Brazilian Secretary of Health and the World Health Organization and much greater than those found in predatory fish species in the control area were all below this critical value (0.5 pg.g\'X demonstrating the influence of anthropogenic contamination in the gold mining area. In both areas, non-predators fish species had lower mercury concentrations than predators fish species, indicating the effects of biomagnification of mercury in the food chain. Safety limits for fish consumption by the human populations in this gold mining area were estabilished considering the mercury levels encontred in fish and the critical intake rate associated with the signs of mercury poisoning. Pacu, could be consumed without restrictions, matrinchã, curimatã, mandi and tucunaré, could be consumed with moderation and large predatory fish species (mostly Siluriformes), could be consumed only sporadically. Some factors that could influence mercury contaminations in "ribeirinhos" are discussed.A concentração de mercúrio total foi determinada em onze espécies de peixes coletados de setembro a outubro de 1991, na área de garimpo de ouro da Cachoeira de Tcotônio e da área considerada controle em Guajará-Mirim, ambas no rio Madeira, Estado de Rondônia. Utilizou-se, para a análise, a técnica de espectrofotometria de absorção atômica com gerador de vapor frio de Hg. Quase todos os peixes predadores da área de garimpo tiveram concentrações de mercúrio acima do nível critico de 0,5 pg.g"1 permitido para consumo humano pelo Ministério da Saúde do Brasil e Organização Mundial de Saúde, sendo bem maiores que as concentrações de mercúrio nas espécies predadoras da área controle, evidenciando a influência do garimpo de ouro na contaminação dos peixes por mercúrio. As espécies não-predadoras tiveram concentrações de mercúrio abaixo daquelas das espécies predadoras para as duas áreas, indicando o efeito da biomagnificação do mercúrio na cadeia alimentar. Procurou-se estabelecer limites para o consumo de peixes pelas populações humanas da área de garimpo estudada, calculando-se a taxa de ingestão necessária para se desenvolver os primeiros sintomas de contaminação mercurial. Concluiu-se que espécies como o pacu podem ser consumidas sem restrição, já os peixes como matrinchã, curimatã, mandi e tucunaré, deveriam ser consumidos com moderação e que a maioria dos peixes predadores (em geral Siluriformes), deveriam ser consumidos apenas esporadicamente. Discutem-se alguns fatores que poderiam estar interagindo no processo de contaminação por mercúrio dos ribeirinhos dessa área de garimpo

Wave Propagation Through Non-Uniform Plasma

Increased energy demand has led to plans for building many new dams in the western Amazon, mostly in the Andean region. Historical data and mechanistic scenarios are used to examine potential impacts above and below six of the largest dams planned for the region, including reductions in downstream sediment and nutrient supplies, changes in downstream flood pulse, changes in upstream and downstream fish yields, reservoir siltation, greenhouse gas emissions and mercury contamination. Together, these six dams are predicted to reduce the supply of sediments, phosphorus and nitrogen from the Andean region by 69, 67 and 57% and to the entire Amazon basin by 64, 51 and 23%, respectively. These large reductions in sediment and nutrient supplies will have major impacts on channel geomorphology, floodplain fertility and aquatic productivity. These effects will be greatest near the dams and extend to the lowland floodplains. Attenuation of the downstream flood pulse is expected to alter the survival, phenology and growth of floodplain vegetation and reduce fish yields below the dams. Reservoir filling times due to siltation are predicted to vary from 106-6240 years, affecting the storage performance of some dams. Total CO2 equivalent carbon emission from 4 Andean dams was expected to average 10 Tg y-1 during the first 30 years of operation, resulting in a MegaWatt weighted Carbon Emission Factor of 0.139 tons C MWhr-1. Mercury contamination in fish and local human populations is expected to increase both above and below the dams creating significant health risks. Reservoir fish yields will compensate some downstream losses, but increased mercury contamination could offset these benefits

Reducing adverse impacts of Amazon hydropower expansion

Proposed hydropower dams at more than 350 sites throughout the Amazon require strategic evaluation of trade-offs between the numerous ecosystem services provided by Earth\u27s largest and most biodiverse river basin. These services are spatially variable, hence collective impacts of newly built dams depend strongly on their configuration. We use multiobjective optimization to identify portfolios of sites that simultaneously minimize impacts on river flow, river connectivity, sediment transport, fish diversity, and greenhouse gas emissions while achieving energy production goals. We find that uncoordinated, dam-by-dam hydropower expansion has resulted in forgone ecosystem service benefits. Minimizing further damage from hydropower development requires considering diverse environmental impacts across the entire basin, as well as cooperation among Amazonian nations. Our findings offer a transferable model for the evaluation of hydropower expansion in transboundary basins

Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution

It has recently been shown that nucleosome distribution, histone modifications and RNA polymerase II (Pol II) occupancy show preferential association with exons (“exon-intron marking”), linking chromatin structure and function to co-transcriptional splicing in a variety of eukaryotes. Previous ChIP-sequencing studies suggested that these marking patterns reflect the nucleosomal landscape. By analyzing ChIP-chip datasets across the human genome in three cell types, we have found that this marking system is far more complex than previously observed. We show here that a range of histone modifications and Pol II are preferentially associated with exons. However, there is noticeable cell-type specificity in the degree of exon marking by histone modifications and, surprisingly, this is also reflected in some histone modifications patterns showing biases towards introns. Exon-intron marking is laid down in the absence of transcription on silent genes, with some marking biases changing or becoming reversed for genes expressed at different levels. Furthermore, the relationship of this marking system with splicing is not simple, with only some histone modifications reflecting exon usage/inclusion, while others mirror patterns of exon exclusion. By examining nucleosomal distributions in all three cell types, we demonstrate that these histone modification patterns cannot solely be accounted for by differences in nucleosome levels between exons and introns. In addition, because of inherent differences between ChIP-chip array and ChIP-sequencing approaches, these platforms report different nucleosome distribution patterns across the human genome. Our findings confound existing views and point to active cellular mechanisms which dynamically regulate histone modification levels and account for exon-intron marking. We believe that these histone modification patterns provide links between chromatin accessibility, Pol II movement and co-transcriptional splicing

Peacock bass mortality associated with catch-and-release sport fishing in the Negro River, Amazonas State, Brazil

Sport fishing for peacock bass Cichla spp. in the Brazilian Amazon has increased in popularity and attracts anglers who generate significant economic benefits in rural regions. The sustainability of this fishery is partly dependent on the survival of fish caught through catch-and-release fishing. The objective of this work was to investigate, hooking mortality of Cichla spp., including speckled peacock bass (C. temensis Humbolt), butterfly peacock bass (C. orinocensis Humbolt), and popoca peacock bass (C. monoculus Agassiz) in the basin of the Negro River, the largest tributary of the Amazon River. Fish were caught at two different sites using artificial lures, transported to pens anchored in the river and monitored for 72 hours. A total of 162 individual peacock bass were captured and hooking mortality (mean % ± 95% confidence intervals) was calculated. Mean mortality was 3.5% (± 5.0), 2.3% (± 3.5) and 5.2% (± 10.2) for speckled peacock bass, butterfly peacock bass, and popoca peacock bass, respectively. Lengths of captured fish ranged from 26 to 79 cm (standard length), however, only fish under 42 cm died. This research suggests that catch-and-release sport fishing of peacock bass does not result in substantial mortality in the Negro River basin.A pesca esportiva de tucunarés Cichla spp., na Amazônia brasileira, aumentou em popularidade nos últimos anos e tem atraído pescadores esportivos que geram benefícios econômicos para essa região. Entretanto, a sustentabilidade dessa pescaria depende em parte da sobrevivência dos peixes capturados por meio da prática do pesque e solte. O objetivo deste trabalho foi avaliar a mortalidade de Cichla spp., incluindo o tucunaré paca (C. temensis Humbolt), o borboleta (C. orinocensis Humbolt) e o popoca (C. monoculus Agassiz) em dois locais na bacia do rio Negro, o maior tributário do rio Amazonas. Os peixes foram capturados por variados tipos de iscas artificiais e posteriormente monitorados em viveiros construídos no próprio rio por 72 horas. Um total de 162 tucunarés foi capturado, e as mortalidades (% ± intervalo de confiança 95%) foram calculadas. A mortalidade foi 3,5% (± 5,0), 2,3% (± 3,2) e 5,2% (±10,2) para o paca, o borboleta e o popoca, respectivamente. O comprimento padrão dos peixes capturados variou de 26 a 79 cm, mas apenas os peixes menores até 42 cm morreram. A pesquisa sugere que a pesca esportiva não causou substancial mortalidade na população de Cichla spp. na bacia do rio Negro

Comparative Genomic Characterization of Francisella tularensis Strains Belonging to Low and High Virulence Subspecies

Tularemia is a geographically widespread, severely debilitating, and occasionally lethal disease in humans. It is caused by infection by a gram-negative bacterium, Francisella tularensis. In order to better understand its potency as an etiological agent as well as its potential as a biological weapon, we have completed draft assemblies and report the first complete genomic characterization of five strains belonging to the following different Francisella subspecies (subsp.): the F. tularensis subsp. tularensis FSC033, F. tularensis subsp. holarctica FSC257 and FSC022, and F. tularensis subsp. novicida GA99-3548 and GA99-3549 strains. Here, we report the sequencing of these strains and comparative genomic analysis with recently available public Francisella sequences, including the rare F. tularensis subsp. mediasiatica FSC147 strain isolate from the Central Asian Region. We report evidence for the occurrence of large-scale rearrangement events in strains of the holarctica subspecies, supporting previous proposals that further phylogenetic subdivisions of the Type B clade are likely. We also find a significant enrichment of disrupted or absent ORFs proximal to predicted breakpoints in the FSC022 strain, including a genetic component of the Type I restriction-modification defense system. Many of the pseudogenes identified are also disrupted in the closely related rarely human pathogenic F. tularensis subsp. mediasiatica FSC147 strain, including modulator of drug activity B (mdaB) (FTT0961), which encodes a known NADPH quinone reductase involved in oxidative stress resistance. We have also identified genes exhibiting sequence similarity to effectors of the Type III (T3SS) and components of the Type IV secretion systems (T4SS). One of the genes, msrA2 (FTT1797c), is disrupted in F. tularensis subsp. mediasiatica and has recently been shown to mediate bacterial pathogen survival in host organisms. Our findings suggest that in addition to the duplication of the Francisella Pathogenicity Island, and acquisition of individual loci, adaptation by gene loss in the more recently emerged tularensis, holarctica, and mediasiatica subspecies occurred and was distinct from evolutionary events that differentiated these subspecies, and the novicida subspecies, from a common ancestor. Our findings are applicable to future studies focused on variations in Francisella subspecies pathogenesis, and of broader interest to studies of genomic pathoadaptation in bacteria

Parallels between Pathogens and Gluten Peptides in Celiac Sprue

Pathogens are exogenous agents capable of causing disease in susceptible organisms. In celiac sprue, a disease triggered by partially hydrolyzed gluten peptides in the small intestine, the offending immunotoxins cannot replicate, but otherwise have many hallmarks of classical pathogens. First, dietary gluten and its peptide metabolites are ubiquitous components of the modern diet, yet only a small, genetically susceptible fraction of the human population contracts celiac sprue. Second, immunotoxic gluten peptides have certain unusual structural features that allow them to survive the harsh proteolytic conditions of the gastrointestinal tract and thereby interact extensively with the mucosal lining of the small intestine. Third, they invade across epithelial barriers intact to access the underlying gut-associated lymphoid tissue. Fourth, they possess recognition sequences for selective modification by an endogenous enzyme, transglutaminase 2, allowing for in situ activation to a more immunotoxic form via host subversion. Fifth, they precipitate a T cell–mediated immune reaction comprising both innate and adaptive responses that causes chronic inflammation of the small intestine. Sixth, complete elimination of immunotoxic gluten peptides from the celiac diet results in remission, whereas reintroduction of gluten in the diet causes relapse. Therefore, in analogy with antibiotics, orally administered proteases that reduce the host's exposure to the immunotoxin by accelerating gluten peptide destruction have considerable therapeutic potential. Last but not least, notwithstanding the power of in vitro methods to reconstitute the essence of the immune response to gluten in a celiac patient, animal models for the disease, while elusive, are likely to yield fundamentally new systems-level insights

Témoigner, de rien

Con el propósito de evaluar la participación de bacterias heterotróficas en el flujo de carbono en la cadena trófica de un lago de inundación amazónico, recolectas mensuales de estos microorganismos fueron realizadas durante el año hidrológico de diciembre de 2007 hasta noviembre de 2008, en las regiones litoral, pelágica y de macrófitas acuáticas del lago Catalão, en la Amazonia central brasilera. Las bacterias fueron multiplicadas in vitro, usando como sustrato carbono orgánico disuelto (COD) del lago en cada una de las regiones estudiadas, para posterior análisis de la abundancia de isotopos estables de carbono y nitrógeno. Estos datos fueron confrontados con los valores de COD de los cuatro periodos limnológicos del lago (seca, inundación, llena y bajada de aguas). En general se encontró que la fuente principal de carbono de las bacterias heterotróficas fue aquella de origen C4, que presentó un aporte mínimo de 75%, en la medida en que el d13C de las bacterias presentó valor medio de -17,72‰ ± 2,25. Confrontando ese valor, con el d13C del zooplancton en el mismo período (- 33,04‰ ± 3,81) se concluye que el aporte de las bacterias heterotróficas al flujo de carbono hacia niveles tróficos superiores en el lago estudiado es mínimo