W(h)ither Fossils? Studying Morphological Character Evolution in the Age of Molecular Sequences

A major challenge in the post-genomics era will be to integrate molecular sequence data from extant organisms with morphological data from fossil and extant taxa into a single, coherent picture of phylogenetic relationships; only then will these phylogenetic hypotheses be effectively applied to the study of morphological character evolution. At least two analytical approaches to solving this problem have been utilized: (1) simultaneous analysis of molecular sequence and morphological data with fossil taxa included as terminals in the analysis, and (2) the molecular scaffold approach, in which morphological data are analyzed over a molecular backbone (with constraints that force extant taxa into positions suggested by sequence data). The perceived obstacles to including fossil taxa directly in simultaneous analyses of morphological and molecular sequence data with extant taxa include: (1) that fossil taxa are missing the molecular sequence portion of the character data; (2) that morphological characters might be misleading due to convergence; and (3) character weighting, specifically how and whether to weight characters in the morphological partition relative to characters in the molecular sequence data partition. The molecular scaffold has been put forward as a potential solution to at least some of these problems. Using examples of simultaneous analyses from the literature, as well as new analyses of previously published morphological and molecular sequence data matrices for extant and fossil Chiroptera (bats), we argue that the simultaneous analysis approach is superior to the molecular scaffold approach, specifically addressing the problems to which the molecular scaffold has been suggested as a solution. Finally, the application of phylogenetic hypotheses including fossil taxa (whatever their derivation) to the study of morphological character evolution is discussed, with special emphasis on scenarios in which fossil taxa are likely to be most enlightening: (1) in determining the sequence of character evolution; (2) in determining the timing of character evolution; and (3) in making inferences about the presence or absence of characteristics in fossil taxa that may not be directly observable in the fossil record. Published By: Missouri Botanical Garde

The Fossil Calibration Database—A New Resource for Divergence Dating

Fossils provide the principal basis for temporal calibrations, which are critical to the accuracy of divergence dating analyses. Translating fossil data into minimum and maximum bounds for calibrations is the most important—often least appreciated—step of divergence dating. Properly justified calibrations require the synthesis of phylogenetic, paleontological, and geological evidence and can be difficult for nonspecialists to formulate. The dynamic nature of the fossil record (e.g., new discoveries, taxonomic revisions, updates of global or local stratigraphy) requires that calibration data be updated continually lest they become obsolete. Here, we announce the Fossil Calibration Database (http://fossilcalibrations.org), a new open-access resource providing vetted fossil calibrations to the scientific community. Calibrations accessioned into this database are based on individual fossil specimens and follow best practices for phylogenetic justification and geochronological constraint. The associated Fossil Calibration Series, a calibration-themed publication series at Palaeontologia Electronica, will serve as a key pipeline for peer-reviewed calibrations to enter the databas

The Fossil Calibration Database, A New Resource for Divergence Dating

Fossils provide the principal basis for temporal calibrations, which are critical to the accuracy of divergence dating analyses. Translating fossil data into minimum and maximum bounds for calibrations is the most important, and often least appreciated, step of divergence dating. Properly justified calibrations require the synthesis of phylogenetic, paleontological, and geological evidence and can be difficult for non- specialists to formulate. The dynamic nature of the fossil record (e.g., new discoveries, taxonomic revisions, updates of global or local stratigraphy) requires that calibration data be updated continually lest they become obsolete. Here, we announce the Fossil Calibration Database (http://fossilcalibrations.org), a new open- access resource providing vetted fossil calibrations to the scientific community. Calibrations accessioned into this database are based on individual fossil specimens and follow best practices for phylogenetic justification and geochronological constraint. The associated Fossil Calibration Series, a calibration-themed publication series at Palaeontologia Electronica, will serve as one key pipeline for peer-reviewed calibrations to enter the database

Genome Wide Analysis of Inbred Mouse Lines Identifies a Locus Containing Ppar-γ as Contributing to Enhanced Malaria Survival

The genetic background of a patient determines in part if a person develops a mild form of malaria and recovers, or develops a severe form and dies. We have used a mouse model to detect genes involved in the resistance or susceptibility to Plasmodium berghei malaria infection. To this end we first characterized 32 different mouse strains infected with P. berghei and identified survival as the best trait to discriminate between the strains. We found a locus on chromosome 6 by linking the survival phenotypes of the mouse strains to their genetic variations using genome wide analyses such as haplotype associated mapping and the efficient mixed-model for association. This new locus involved in malaria resistance contains only two genes and confirms the importance of Ppar-γ in malaria infection

Oldest Known Eucalyptus Macrofossils Are from South America

The evolutionary history of Eucalyptus and the eucalypts, the larger clade of seven genera including Eucalyptus that today have a natural distribution almost exclusively in Australasia, is poorly documented from the fossil record. Little physical evidence exists bearing on the ancient geographical distributions or morphologies of plants within the clade. Herein, we introduce fossil material of Eucalyptus from the early Eocene (ca. 51.9 Ma) Laguna del Hunco paleoflora of Chubut Province, Argentina; specimens include multiple leaves, infructescences, and dispersed capsules, several flower buds, and a single flower. Morphological similarities that relate the fossils to extant eucalypts include leaf shape, venation, and epidermal oil glands; infructescence structure; valvate capsulate fruits; and operculate flower buds. The presence of a staminophore scar on the fruits links them to Eucalyptus, and the presence of a transverse scar on the flower buds indicates a relationship to Eucalyptus subgenus Symphyomyrtus. Phylogenetic analyses of morphological data alone and combined with aligned sequence data from a prior study including 16 extant eucalypts, one outgroup, and a terminal representing the fossils indicate that the fossils are nested within Eucalyptus. These are the only illustrated Eucalyptus fossils that are definitively Eocene in age, and the only conclusively identified extant or fossil eucalypts naturally occurring outside of Australasia and adjacent Mindanao. Thus, these fossils indicate that the evolution of the eucalypt group is not constrained to a single region. Moreover, they strengthen the taxonomic connections between the Laguna del Hunco paleoflora and extant subtropical and tropical Australasia, one of the three major ecologic-geographic elements of the Laguna del Hunco paleoflora. The age and affinities of the fossils also indicate that Eucalyptus subgenus Symphyomyrtus is older than previously supposed. Paleoecological data indicate that the Patagonian Eucalyptus dominated volcanically disturbed areas adjacent to standing rainforest surrounding an Eocene caldera lake

Revisions to the fossil sporophyte record of Marsilea

© 2019 Elizabeth J. Hermsen, published by Sciendo 2019. The fossil record of Marsilea is challenging to assess, due in part to unreliable reports and conflicting opinions regarding the proper application of the names Marsilea and Marsileaceaephyllum to fossil leaves and leaflets similar to those of modern Marsilea. Specimens examined for this study include material assigned to Marsileaceaephyllum johnhallii, purportedly the oldest fossil record of a Marsilea-like sporophyte from the Lower Cretaceous of the Dakota Formation, Kansas, U.S.A.; leaves and leaf whorls of the extinct aquatic angiosperm Fortuna from several Late Cretaceous and Paleocene localities in western North America; and leaves and leaflets resembling Marsilea from the Eocene Green River Formation, Colorado and Utah, U.S.A. Literature on the fossil record of Marsilea was also reviewed. As a result, several taxonomic changes are proposed. Marsileaceaephyllum johnhallii is reinterpreted as an aquatic angiosperm that shares some architectural features with the genus Fortuna, although Marsileaceaephyllum is here maintained as a distinct genus with an emended diagnosis; under this reinterpretation, the name Marsileaceaephyllum can no longer be applied to sporophyte organs with affinities to Marsileaceae. Three valid fossil Marsilea species are recognized on the basis of sporophyte material that includes characteristic quadrifoliolate leaves and reticulate-veined leaflets: Marsilea campanica (J. Kvaček & Herman) Hermsen, comb. nov., from the Upper Cretaceous Grünbach Formation, Austria; Marsilea mascogos Estrada-Ruiz et al., from the Upper Cretaceous Olmos Formation, Mexico; and Marsilea sprungerorum Hermsen, sp. nov., from the Eocene Green River Formation, U.S.A. The species are distinguished from one another based on leaflet dimensions. Leaves from the Eocene Wasatch Formation, U.S.A., are transferred from Marsileaceaephyllum back to Marsilea, although not assigned to a fossil species. Finally, an occurrence of Marsilea from the Oligocene of Ethiopia is reassigned to Salvinia. A critical evaluation of the fossil record of Marsilea thus indicates that (1) the oldest fossil marsileaceous sporophytes bearing Marsilea-like leaves are from the Campanian; (2) only four credible records of sporophyte material attributable to Marsilea are known; and (3) the oldest dispersed Marsilea spores are known from the Oligocene

Data from: Fruits of Juglandaceae from the Eocene of South America

Specimens of a new fruit taxon, Alatonucula ignis, from the early Eocene Laguna del Hunco flora of Chubut, Patagonia, Argentina, have characteristics consistent with assignment to Juglandaceae. Each fossil fruit consists of a nutlet with an attached wing that varies from unlobed to trilobed. One specimen clearly shows that the nutlet has a single locule partially subdivided into four chambers; its counterpart contains a four-lobed locule cast. The basally partitioned locule with lobed seed indicates that Alatonucula can be placed within Juglandaceae; the overall structure of the fruits suggests affinities to subfamily Engelhardioideae, which typically have fruits consisting of a nutlet attached to a trilobed wing. Parsimony analyses of a morphological matrix for extant and fossil Juglandaceae revised from a previously published study demonstrate that 1) Alatonucula groups with Engelhardioideae; and 2) Paleooreomunnea, an Eocene North American taxon that includes a fruit type with a trilobed wing, is within crown-group Engelhardioideae. Alatonucula, along with fossil juglandaceous pollen from the Paleogene of Patagonia, indicates that Juglandaceae may have had an unexpectedly early presence in South America. Furthermore, these fruits represent a Laurasian biogeographic signal in the Laguna del Hunco flora, which contrasts with the predominantly Australasian signal highlighted in previous studies

Hermsen_Gandolfo_2D_3_panels

Movie showing a micro-CT scan of the locule cast of Alatonucula ignis preserved in the holotype specimen (MPEF-Pb 5090A). The movie starts at the base of the locule cast and moves apically. The specimen is shown in transverse and longitudinal sections. Imaging data were acquired through the Cornell University Biotechnology Resource Center

Reporte preliminar sobre la paleoflora de la Formación La Colonia (Campaniano-Maastrichtiano, Cretácico tardío), Chubut, Patagonia, Argentina

En esta contribución, se presentan elementos paleoflorísticos de la Formación La Colonia (Campaniano-Maastrichtiano, Cretácico tardío), la cual se encuentra expuesta entre Telsen y Sierra Rosada en el área conocida como la Meseta Norpatagónica, Chubut, Patagonia, Argentina. Hasta ahora, la paleoflora era conocida por sólo algunos de sus componentes acuáticos: las pteridofitas representadas por Salviniaceae y Marsileaceae y las angiospermas por Nelumbonaceae. Sin embargo, nuevas colecciones revelaron la presencia de una paleoflora mucho más diversa asociada a estos elementos incluyendo no sólo otros elementos acuáticos sino también helechos, coníferas y angiospermas terrestres. Entre los acuáticos se describen fósiles semejantes a Azolla (pteridofita), y dos angiospermas relacionadas a las familias Araceae y Typhaceae; mientras que los componentes terrestres están representados por fósiles de Dicksoniaceae (pteridofita), posiblemente Araucariaceae (conífera) y seis morfotipos de angiospermas. Los elementos acuáticos son interpretados como autóctonos y los terrestres como alóctonos. La tafocenosis confirma el tipo de ambiente anteriormente sugerido para los sectores medios de la Formación La Colonia.In this contribution, we present new paleofloristic elements from the La Colonia Formation (Campanian-Maastrichtian, Late Cretaceous), exposed between Telsen and Sierra Rosada in the area known as the North Patagonian Massif, Chubut, Patagonia, Argentina. Previously, the paleoflora was only known from some of its aquatic components: pteridophytes representing the families Salviniaceae and Marsileaceae and angiosperms representing the families Nelumbonaceae. However, recent paleobotanical collections have revealed the presence of a more diverse plant assemblage including other aquatic elements as well as terrestrial ferns, conifers, and several angiosperms. Among the aquatics, macrofossils similar to Azolla (pteridophyte), and two angiosperms related to the families Araceae and Typhaceae are described; while the terrestial components are represented by fossils of Dicksonianceae (pteridophyten), a putative araucariacean conifer, and six dicot morphotypes. The aquatic elements are intepreted as autochtonous and the terrestial as allochtonous. The taphocenosis confirms the environmental interpretation previously suggested for the middle sector of the La Colonia Formation.Fil: Gandolfo, María A.. Cornell University; Estados UnidosFil: Cuneo, Nestor Ruben. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Hermsen, Elizabeth J.. Ohio University; Estados Unido