Feeding ecology of Liza spp. in a tidal flat: Evidence of the importance of primary production (biofilm) and associated meiofauna

International audienceGrey mullets are unique among temperate-region fish species in their ability to feed on mudflat biofilm. In this study, we examined mullet feeding strategies on biofilm and associated meiofauna by using a diet study and stable isotope analysis to explore functional interactions between mullets and tidal flats. A stomach vacuity investigation showed that mullets did not import any materials from subtidal areas into the mudflat but exported mud, biofilm, and associated meiofauna. The results of mullet stomach content and fecal analyses, when compared to the availability of tidal flat resources, showed evidence of mullets' ability to ingest and assimilate biofilm and to concentrate major meiofauna grazers such as nematodes, copepods and, secondarily, foraminifers and ostracods. Isotopic ratios confirmed diet investigations, and as recently shown in salt marsh habitats, mullets exhibited an intermediate trophic position, supporting the hypothesis that they can assimilate both biofilm and major meiofauna grazers. The function of the tidal flat as a feeding habitat for gray mullets and the role of mullets as the main export pathway of biofilm from tidal flat ecosystems are discussed

Characterizing the Feeding Habits of the Testate Amoebae Hyalosphenia papilio and Nebela tincta along a Narrow "Fen-Bog" Gradient Using Digestive Vacuole Content and (13)C and (15)N Isotopic Analyses.

International audiencePopulation dynamics and feeding habits of the testate amoebae Nebela tincta and Hyalosphenia papilio were studied along a short "fen" to "bog" gradient in a Sphagnum-dominated mire (Jura, France). Samples were collected in living "top segments" (0-3cm) and early declining "bottom segments" (3-6cm) of Sphagnum fallax peat. Observations of digestive vacuole content and stable isotope analyses ((13)C and (15)N) were used to establish the feeding behavior of both testate amoeba species. Owing to their vertical distribution, the feeding habit of H. papilio was described from top segments, and that of N. tincta from bottom segments. Among identified food sources, those most frequently ingested by N. tincta were spores and mycelia of fungi (55%), microalgae (25%) and cyanobacteria (8.5%). For H. papilio, the most frequently ingested prey were ciliates (55%) and microalgae (35%). Nonmetric Multidimensional Scaling analysis clearly demonstrated that the two species did not have the same feeding habit along the "fen-bog" gradient, and furthermore that a significant spatial split exists in the feeding behavior of H. papilio. Additionally, isotope analyses suggested that H. papilio and N. tincta did not have the same trophic position in the microbial food web, probably resulting from their different feeding strategies

Bacterivory by benthic organisms in sediment: quantification using 15N enriched bacteria

International audienceThe fate of benthic bacterial biomass in benthic food webs is a topic of major importance but poorly described. This paper describes an alternative method for evaluation of bacterial grazing rate by meiofauna and macrofauna using bacteria pre-enriched with stable isotopes. Natural bacteria from the sediment of an intertidal mudflat were cultured in a liquid medium enriched with 15NH4Cl. Cultured bacteria contained 2.9 % of 15N and were enriched sufficiently to be used as tracers during grazing experiments. Cultured-bacteria presented a biovolume (0.21 µm3) and a percentage of actively respiring bacteria (10 %) similar to those found in natural communities. The number of Operational Taxon Units found in cultures fluctuated between 56 and 75 % of that found in natural sediment. Despite this change in community composition, the bacterial consortium used for grazing experiments exhibited characteristics of size, activity and diversity more representative of the natural community than usually noticed in many other grazing studies. The bacterial ingestion rates of three different grazers were in the range of literature values resulting from other methods: 1149 ngC ind-1 h-1 for the mud snail Hydrobia ulvae, 0.027 ngC ind-1 h-1 for the nematode community, and 0.067 ngC ind-1 h-1 for the foraminifera Ammonia tepida. The alternative method described in this paper overcomes some past limitations and it presents interesting advantages such as short time incubation and in situ potential utilisation

Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach

International audienceResuspended sediment can increase plankton biomass and the growth of bacteria, thus influencing the coastal planktonic microbial food web. But little is known about resuspension itself: is it a single massive change or a whole series of events and how does it affect the quantity and quality of resuspended prokaryotic cells? We simulated the sequential erosion of mud cores to better understand the fate and role of benthic prokaryotes resus-pended in the water column. We analyzed the total, attached and free-living prokaryotic cells resuspended, their structure and the activities of their hydrolytic enzymes in terms of the biotic and abiotic factors that affect the composition of microphytobenthic biofilm. Free living prokaryotes were resuspended during the fluff layer erosion phase (for shear velocities below 5 cm · s −1) regardless of the bed sediment composition. At the higher shear velocities, resuspended prokaryotes were attached to particulate matter. Free and attached cells are thus unevenly distributed, scattered throughout the organic matter (OM) in the uppermost mm of the sediment. Only 10–27% of the total cells initially resuspended were living and most of the Bacteria were Cyanobacteria and Gamma-proteobacteria; their numbers increased to over 30% in parallel with the hydrolytic enzyme activity at highest shear velocity. These conditions released prokaryotic cells having different functions that lie deep in the sediment; the most important of them are Archaea. Finally, composition of resuspended bacterial populations varied with resuspension intensity, and intense resus-pension events boosted the microbial dynamics and enzyme activities in the bottom layers of sea water

Meiofauna versus macrofauna as a food resource in a tropical intertidal mudflat

International audienceEvaluations of the functioning of benthic marine food webs could be improved by quantifying organic matter fluxes from the meiofauna to higher trophic levels. In this study, we measured the simultaneous ingestion of meiofauna and macrofauna by common dwellers of a tropical intertidal mudflat on the coast of Amazonia. The meiofauna and macrofauna (tanaid) communities of a tropical intertidal mudflat of French Guiana were separately enriched with 15N and 13C, respectively. The enriched preys were then used as tracers during feeding experiments with common predators of different sizes and feeding mechanisms: a Portunidae crab (Callinectes bocourti), a Penaeidae shrimp (Farfantepenaeus subtilis), and a Gobiidae fish (Gobionellus oceanicus). In feeding experiments with all predators except crabs, feeding rates increased with the availability of meiofauna and macrofauna food sources. The ability of consumers to ingest their food selectively was evaluated by calculating the differences in the ratio of macrofauna to meiofauna between the (1) ingested material and (2) that available in the environment. Larger predators showed a higher degree of preferential macrofauna ingestion than smaller predators, consistent with the optimal foraging theory. For large predators, the meiofauna would be important only during early life or in the absence of large food items

Experimental study of RCCI engine – ammonia combustion with diesel pilot injection

Ammonia is seen as one potential carbon-free fuel, especially for maritime applications. Since SI engines require a significant ignition energy for large cylinders, engine manufacturers are targeting the use of ammonia in Compressed Ignition (CI) engines. Because of ammonia’s high auto-ignition temperature, to ensure that the combustion occurs in a CI engine, a pilot injection of a higher reactivity fuel must be used, as in Reactivity Controlled Compression Ignition engines. In the present study, the objective was to provide first unique data about the efficiency and pollutant emissions for a single cylinder compression ignition engine with a diesel energy fraction as minimum as possible (down to less than 2%) at a constant 1000 rpm. Experiments cover the impact of a wide variation of equivalence ratios of NH3-air mixtures from ultra-lean to slightly rich conditions. CO2, CO, NH3, NOX, N2O, UHC values were measured with a Fourier Transform Infrared (FTIR) spectrometer. Results of CO2 and N2O are presented as CO2-Equivalent (CO2eq) impact. Combustion stability was achieved for most conditions but not for the leanest ones. Furthermore, under lean conditions for a similar ammonia content, the minimum CO2eq is reached with a slightly higher Diesel Energy Fraction than the minimum possible. Finally, both leanest and richest conditions present a higher level of CO2eq compared to the range of ammonia/air mixtures at stoichiometry or just below

To What Extent Do Food Preferences Explain the Trophic Position of Heterotrophic and Mixotrophic Microbial Consumers in a Sphagnum Peatland?

Although microorganisms are the primary drivers of biogeochemical cycles, the structure and functioning of microbial food webs are poorly studied. This is the case in Sphagnum peatlands, where microbial communities play a key role in the global carbon cycle. Here, we explored the structure of the microbial food web from a Sphagnum peatland by analyzing (1) the density and biomass of different microbial functional groups, (2) the natural stable isotope (δ 13C and δ 15N) signatures of key microbial consumers (testate amoebae), and (3) the digestive vacuole contents of Hyalosphenia papilio, the dominant testate amoeba species in our system. Our results showed that the feeding type of testate amoeba species (bacterivory, algivory, or both) translates into their trophic position as assessed by isotopic signatures. Our study further demonstrates, for H. papilio, the energetic benefits of mixotrophy when the density of its preferential prey is low. Overall, our results show that testate amoebae occupy different trophic levels within the microbial food web, depending on their feeding behavior, the density of their food resources, and their metabolism (i.e., mixotrophy vs. heterotrophy). Combined analyses of predation, community structure, and stable isotopes now allow the structure of microbial food webs to be more completely described, which should lead to improved models of microbial community functio

Metabolic selection of a homologous recombination-mediated gene loss protects Trypanosoma brucei from ROS production by glycosomal fumarate reductase

The genome of trypanosomatids rearranges by using repeated sequences as platforms for amplification or deletion of genomic segments. These stochastic recombination events have a direct impact on gene dosage and foster the selection of adaptive traits in response to environmental pressure. We provide here such an example by showing that the phosphoenolpyruvate carboxykinase (PEPCK) gene knockout (Δpepck) leads to the selection of a deletion event between two tandemly arranged fumarate reductase (FRDg and FRDm2) genes to produce a chimeric FRDg-m2 gene in the Δpepck∗ cell line. FRDg is expressed in peroxisome-related organelles, named glycosomes, expression of FRDm2 has not been detected to date, and FRDg-m2 is nonfunctional and cytosolic. Re-expression of FRDg significantly impaired growth of the Δpepck∗ cells, but FRD enzyme activity was not required for this negative effect. Instead, glycosomal localization as well as the covalent flavinylation motif of FRD is required to confer growth retardation and intracellular accumulation of reactive oxygen species (ROS). The data suggest that FRDg, similar to Escherichia coli FRD, can generate ROS in a flavin-dependent process by transfer of electrons from NADH to molecular oxygen instead of fumarate when the latter is unavailable, as in the Δpepck background. Hence, growth retardation is interpreted as a consequence of increased production of ROS, and rearrangement of the FRD locus liberates Δpepck∗ cells from this obstacle. Interestingly, intracellular production of ROS has been shown to be required to complete the parasitic cycle in the insect vector, suggesting that FRDg may play a role in this proces