Daraina sportive lemur (Lepilemur milanoii) density and population size estimates in most of its distribution range: the Loky-Manambato region.

The population of the Daraina sportive lemur (Lepilemur milanoii) is believed to be mostly confined to the Loky-Manambato region (Louis et al., 2006). Very little is known about L. milanoii and it is classified as “Data Deficient” by the IUCN (IUCN, 2013; Schwitzer et al., 2013). Despite the management of the area by the NGO Fanamby since 2005, no study had been conducted to determine the presence and the abundance of L. milanoii in the main forest fragments of the region. During the 2011 dry season we surveyed the ten main forest fragments of the Loky-Manambato region and estimated L. milanoii densities and population sizes using line transect distance sampling (Buckland, 2001) and the DISTANCE software (Thomas et al., 2010). The results suggest that sportive lemur densities are reasonably high in the region, but with important discrepancies between forest fragments, with densities ranging from 49.8 ind./km² in Antsaharaingy to 590.5 ind./km² in Ampondrabe. For the region Loky-Manambato we were able to estimate a population size of 52,000 individuals. This is the first estimate for the total population size and we argue that similar studies should be repeated to monitor environmental changes and anthropogenic pressures (hunting, deforestation, mining, etc.).FCT grant: (SFRH/BD/64875/2009); the Groupement de Recherche International (GDRI); "Laboratoire d’Excellence" (LABEX) entitled TULIP : (ANR-10-LABX-41); Rufford Small Grant Foundation grant: (10941-1)

Estimation des densités et tailles de population du Microcèbe Roux du Nord de (Microcebus tavaratra) dans la région Loky-Manambato (Daraina)

La région Loky-Manambato dans le Nord de Madagascar, est connue pour abriter le propithèque à couronne dorée (Propithecus tattersalli), un lémurien emblématique et endémique de la région. Néanmoins cette région composée d’une dizaine de fragments forestiers de taille moyenne et encore relativement peu étudiés, abrite aussi le microcèbe roux du nord (Microcebus tavaratra). Malgré la gestion des forêts de cette région par l’ONG Fanamby depuis 2005, aucune étude n’avait encore été menée dans chacun des fragments forestiers de la région pour déterminer la présence et quantifier la taille des populations de microcèbes de chacun d’entre eux. Lors de notre étude nous avons tenté d’estimer les densités et les tailles des populations de M. tavaratra dans neuf des dix principaux fragments forestiers de la région. Dans ce but nous avons utilisé la méthode de «line transect distance-sampling». Nos résultats montrent que les densités de microcèbes sont relativement élevées, et varient de 28 à 325 ind/km² entre fragments forestiers de la région. Desétudes plus approfondies des données collectées seront nécessaires pour déterminer les variables environnementales responsables des différences de densité observées.FCT grant: (SFRH/BD/64875/2009); l’Institut Français de la Biodiversité, GDRI Madagascar, “Laboratoire d’Excellence” (LABEX) TULIP: (ANR -10-LABX-41)

Survey of the critically endangered Perrier’s sifaka (Propithecus Perrieri) across most if its distribution range.

Propithecus perrieri (Perrier’s sifaka) is one of the most endangered lemur species due to its small and fragmented distribution range. Despite a Critically Endangered (CR) conservation and flagship species status, there are still many uncertainties regarding its actual distribution and its presence in some forests of its putative distribution range. We report the results of diurnal and nocturnal surveys carried out in 2012 across most forest fragments of its putative distribution range, namely the Ankarana National Park, the Analamerana Special Reserve and Andrafiamena-Andava-koera Protected Area. During our surveys the species was only observed in Andrafiamena and Analamerana protected areas.FCT fellowship: (SFRH/BD/64875/2009), Institut Français de la Biodiversité, the GDRI Madagascar, the “Laboratoire d'Excellence” (LABEX) entitled TULIP (ANR-10-LABX-41), Instituto Gulbenkian de Ciência, “Optimus Alive!” Biodiversity grant, The Rufford Small Grant for Nature Conservation: (ref. 10941-1), Département de Biologie Animale et Ecologie (D.B.A.E.), Faculté des Sciences, University of Mahajanga, the University of Antsiranana, and the Fanamby NGO (in particular S. Rajaobelina), Madagascar National Park, Analamerana Special Reserve, Ankarana National Park

Improved control strategy of DFIG-based wind turbines using direct torque and direct power control techniques

This paper presents different control strategies for a variable-speed wind energy conversion system (WECS), based on a doubly fed induction generator. Direct Torque Control (DTC) with Space-Vector Modulation is used on the rotor side converter. This control method is known to reduce the fluctuations of the torque and flux at low speeds in contrast to the classical DTC, where the frequency of switching is uncontrollable. The reference for torque is obtained from the maximum power point tracking technique of the wind turbine. For the grid-side converter, a fuzzy direct power control is proposed for the control of the instantaneous active and reactive power. Simulation results of the WECS are presented to compare the performance of the proposed and classical control approaches.Peer reviewedFinal Accepted Versio

Wave-of-Advance Models of the Diffusion of the Y Chromosome Haplogroup R1b1b2 in Europe

Whether or not the spread of agriculture in Europe was accompanied by movements of people is a long-standing question in archeology and anthropology, which has been frequently addressed with the help of population genetic data. Estimates on dates of expansion and geographic origins obtained from genetic data are however sensitive to the calibration of mutation rates and to the mathematical models used to perform inference. For instance, recent data on the Y chromosome haplogroup R1b1b2 (M269) have either suggested a Neolithic origin for European paternal lineages or a more ancient Paleolithic origin depending on the calibration of Y-STR mutation rates. Here we examine the date of expansion and the geographic origin of hgR1b1b2 considering two current estimates of mutation rates in a total of fourteen realistic wave-of-advance models. We report that a range expansion dating to the Paleolithic is unlikely to explain the observed geographical distribution of microsatellite diversity, and that whether the data is informative with respect to the spread of agriculture in Europe depends on the mutation rate assumption in a critical way

Signature of a Pre-Human Population Decline in the Critically Endangered Reunion Island Endemic Forest Bird Coracina newtoni

The exceptional biodiversity of Reunion Island is threatened by anthropogenic landscape changes that took place during the 350 years of human colonization. During this period the human population size increased dramatically from 250 to 800,000. The arrival of humans together with the development of agriculture, invasive species such as rats and cats, and deforestation has lead to the extinction of more than half of the original vertebrate species of the island. For the remaining species, significant work is being carried out to identify threats and conservation status, but little genetic work has been carried on some of the most endangered species. In the last decade theoretical studies have shown the ability of neutral genetic markers to infer the demographic history of endangered species and identify and date past population size changes (expansions or bottlenecks). In this study we provide the first genetic data on the critically endangered species the Reunion cuckoo-shrike Coracina newtoni. The Reunion cuckoo-shrike is a rare endemic forest bird surviving in a restricted 12-km2 area of forested uplands and mountains. The total known population consists of less than one hundred individuals out of which 45 were genotyped using seventeen polymorphic microsatellite loci. We found a limited level of genetic variability and weak population structure, probably due to the limited geographic distribution. Using Bayesian methods, we identified a strong decline in population size during the Holocene, most likely caused by an ancient climatic or volcanic event around 5000 years ago. This result was surprising as it appeared in apparent contradiction with the accepted theory of recent population collapse due to deforestation and predator introduction. These results suggest that new methods allowing for more complex demographic models are necessary to reconstruct the demographic history of populations

Stepping closer to pulsed single microwave photon detectors for axions search

Axions detection requires the ultimate sensitivity down to the single photon limit. In the microwave region this corresponds to energies in the yJ range. This extreme sensitivity has to be combined with an extremely low dark count rate, since the probability of axions conversion into microwave photons is supposed to be very low. To face this complicated task, we followed two promising approaches that both rely on the use of superconducting devices based on the Josephson effect. The first one is to use a single Josephson junction (JJ) as a switching detector (i.e. exploiting the superconducting to normal state transition in presence of microwave photons). We designed a device composed of a coplanar waveguide terminated on a current biased Josephson junction. We tested its efficiency to pulsed (pulse duration 10 ns) microwave signals, since this configuration is closer to an actual axions search experiment. We show how our device is able to reach detection capability of the order of 10 photons with frequency 8 GHz. The second approach is based on an intrinsically quantum device formed by two resonators coupled only via a superconducting qubit network (SQN). This approach relies on quantum nondemolition measurements of the resonator photons. We show that injecting RF power into the resonator, the frequency position of the resonant drop in the transmission coefficient (S21) can be modulated up to 4 MHz. We anticipate that, once optimized, both the devices have the potential to reach single photon sensitivity

Amount of Information Needed for Model Choice in Approximate Bayesian Computation

Approximate Bayesian Computation (ABC) has become a popular technique in evolutionary genetics for elucidating population structure and history due to its flexibility. The statistical inference framework has benefited from significant progress in recent years. In population genetics, however, its outcome depends heavily on the amount of information in the dataset, whether that be the level of genetic variation or the number of samples and loci. Here we look at the power to reject a simple constant population size coalescent model in favor of a bottleneck model in datasets of varying quality. Not only is this power dependent on the number of samples and loci, but it also depends strongly on the level of nucleotide diversity in the observed dataset. Whilst overall model choice in an ABC setting is fairly powerful and quite conservative with regard to false positives, detecting weaker bottlenecks is problematic in smaller or less genetically diverse datasets and limits the inferences possible in non-model organism where the amount of information regarding the two models is often limited. Our results show it is important to consider these limitations when performing an ABC analysis and that studies should perform simulations based on the size and nature of the dataset in order to fully assess the power of the study

Coherent Quantum Network of Superconducting Qubits as a Highly Sensitive Detector of Microwave Photons for Searching of Galactic Axions

We propose a novel approach to detect a low power microwave signal with a frequency of the order of several GHz based on a coherent collective response of quantum states occurring in a superconducting qubits network (SQN). An SQN composes of a large number of superconducting qubits embedded in a low-dissipative superconducting resonator. Our theory predicts that an SQN interacting with the off-resonance microwave radiation, demonstrates the collective alternating current Stark effect that can be measured even in the limit of single photon counting. A design of the layout of three terminals SQN detectors containing 10 flux qubits weakly coupled to a low-dissipative R-resonator and T-transmission line was developed. The samples were fabricated by Al-based technology with Nb resonator. The SQN detector was tested in terms of microwave measurements of scattering parameters and two-tone spectroscopy. A substantial shift of the frequency position of the transmission coefficient drop induced by a second tone pump signal was observed, and this effect clearly manifests a nonlinear multiphoton interaction between the second-tone microwave pump signal and an array of qubits

Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery

Worldwide, approximately 1.8 million children die from diarrhea annually, and millions more suffer multiple episodes of nonfatal diarrhea. On average, in up to 40% of cases, no etiologic agent can be identified. The advent of metagenomic sequencing has enabled systematic and unbiased characterization of microbial populations; thus, metagenomic approaches have the potential to define the spectrum of viruses, including novel viruses, present in stool during episodes of acute diarrhea. The detection of novel or unexpected viruses would then enable investigations to assess whether these agents play a causal role in human diarrhea. In this study, we characterized the eukaryotic viral communities present in diarrhea specimens from 12 children by employing a strategy of “micro-mass sequencing” that entails minimal starting sample quantity (<100 mg stool), minimal sample purification, and limited sequencing (384 reads per sample). Using this methodology we detected known enteric viruses as well as multiple sequences from putatively novel viruses with only limited sequence similarity to viruses in GenBank