Decadal changes in the Canary upwelling system as revealed by satellite observations: Their impact on productivity

Satellite-derived sea-surface temperature (SST) data were used to study the variability of the Canary Upwelling Ecosystem-CUE (12 to 43N) over the last two decades of the 20th century. The analysis reveals well known patterns of climatology and seasonal variability in this upwelling system. In contrast to quasi-regular decadal oscillations of SST anomalies observed in the open ocean, the coastal variability during the 1980s–1990s was better described as a decadal scale shift of the upwelling regime intensity. The analysis of the upwelling index and coastal zonal gradient of SST showed that this shift occurred earlier (∼1992) in the northern part of the CUE (off western Iberia) and some years later (∼1995) off the northwest African coast. The long-term variability of upwelling-favorable wind forcing during the examined period provides reasonable explanations for the observed shift of the upwelling intensity and its timing for the whole CUE. Finally, changes in the productivity of several small pelagic fish species observed for the same period suggest that there was a response of the ecosystem to these changes

A high-resolution hydrodynamic-biogeochemical coupled model of the Gulf of Cadiz – Alboran Sea region.

The southern Iberia regional seas comprise the Gulf of Cadiz and the Alboran Sea sub-basins connected by the narrow Strait of Gibraltar. Both basins are very different in their hydrological and biological characteristics but are, also, tightly connected to each other. Integrative studies of the whole regional oceanic system are scarce and difficult to perform due to the relative large area to cover and the different relevant time-scales of the main forcings in each sub-basin. Here we propose, for the first time, a fully coupled, 3D, hydrodynamic-biogeochemical model that covers, in a single domain (~2km resolution) both marine basins for a 20 years simulation (1989-2008). Model performance is assessed against available data in terms of spatial and temporal distributions of biological variables. In general, the proposed model is able to represent the climatological distributions of primary and secondary producers and also the main seasonality of primary production in the different sub-regions of the analyzed basins. Potential causes of the observed mismatches between model and data are identified and some solutions are proposed for future model development. We conclude that most of these mismatches could be attributed to the missing tidal forcing in the actual model configuration. This model is a first step to obtain a meaningful tool to study past and future oceanographic conditions in this important marine region constituting the unique connection of the Mediterranean Sea with the open world’s ocean

Physical–biological interactions in the life history of small pelagic fish in the Western Iberia Upwelling Ecosystem.

This paper reviews relevant investigations conducted in the Western Iberia Upwelling Ecosystem (WIUE) on the dynamics of small pelagic fish (SPF), its relationship to climate changes and processes related to the ‘ocean triad’ (enrichment, concentration, transport/retention). In the last decades, a decline in the productivity of several SPF species (e.g., sardine and horse mackerel) was observed in the WIUE, which is partially explained by environmental variability (e.g., changes in coastal upwelling). The main mechanism proposed to explain this decline is the increased frequency and intensity of upwelling events during the spawning season (winter) of these species, which is typically a period when convergence conditions prevail. Thus, this ‘anomalous’ situation promotes egg and larval dispersal away from the favourable coastal habitat (the shelf) and consequently has a negative impact on their survival and recruitment. However, the variability of local features like the Western Iberia Buoyant Plume (WIBP) and the Iberian Poleward Current (IPC) introduce important fluctuations in the transport patterns of the region, and could modulate the impact of these winter upwelling events in the survival of larvae. The retention on the shelf of larval sardine along convergence zones formed by the interaction of these two features plays an important role in their survival. Furthermore, the WIBP is a suitable environment for the growth of phytoplankton and for larval fish survival. From these findings it is clear that simplified Ekman transport models could not explain larval fish transport/retention patterns in this region and more realistic biophysical models should be used to simulate the local oceanographic conditions to understand larval dynamics and the success of recruitment of SPF in the Western Iberia

Impact of a winter upwelling event on the distribution and transport of sardine (Sardina pilchardus) eggs and larvae off western Iberia: a retention mechanism.

A hydrographic and ichthyoplanktonic survey was conducted on the western Iberia Peninsula shelf-slope, with the objective of assessing the influence of wind-driven flow on the transport and survival of sardine early life history stages. Measurements were taken during a 2-week period of an 'upwelling-favourable' wind event. An offshore displacement of the surface low salinity Western Iberia Buoyant Plume (WIBP) was observed well off the shelf break. Below the plume, the current was southward over the mid- and inner-shelf. Offshore, the flow was poleward in the northern part of the survey area and equatorward in the south. A convergence zone was detected along the outer shelf and upper slope where the buoyant plume was apparently trapped and deepened. In general, eggs and larvae were distributed according to the spreading of the low salinity surface waters, and also within the convergent band. Older larvae were retained within the latter feature. The role of wind forcing on the plume and its interaction with the slope flow were analysed. A mechanism of larvae retention was formulated based on simplified models of the observed shelf-slope circulation

Diurnal variability of inner-shelf circulation in the lee of a cape under upwelling conditions.

The nearshore circulation in the lee of a cape under upwelling conditions was studied using in-situ data from 3 consecutive summers (2006–2008). Focus was given to a period between 20 July and 04 August 2006 to study the diurnal variability of the cross-shelf circulation. This period was chosen because it had a steady upwellingfavourable wind condition modulated by a diurnal cycle much similar to sea breeze. The daily variability of the observed cross-shelf circulation consisted of three distinct periods: a morning period with a 3-layer vertical structure with onshore velocities at mid-depth, a mid-day period where the flow is reversed and has a 2-layer structure with onshore velocities at the surface and offshore flow below, and, lastly, in the evening, a 2-layer period with intensified offshore velocities at the surface and onshore flow at the bottom. The observed cross-shelf circulation showed a peculiar vertical shape and diurnal variability different from several other systems described in literature. We hypothesize that the flow reversal of the cross-shelf circulation results as a response to the rapid change of the wind magnitude and direction at mid-day with the presence of the cape north of the mooring site influencing this response. A numerical modelling experiment exclusively forced by winds simulated successfully most of the circulation at the ADCP site, especially the mid-day reversal and the evening's upwelling-type structure. This supports the hypothesis that the cross-shelf circulation at diurnal timescales is mostly wind-driven. By analysing the 3D circulation in the vicinity of Cape Sines we came to the conclusion that the diurnal variability of the wind and the flow interaction with topography are responsible for the circulation variability at the ADCP site, though only a small region in the south of the cape showed a similar diurnal variability. The fact that the wind diurnally undergoes relaxation and intensification strongly affects the circulation, promoting superficial onshore flows in the leeside of Cape Sines. Despite the small-scale nature of the observed cross-shelf circulation, onshore flows as the ones described in this study can be particularly helpful to understand the transport and settlement of larvae in this region and in other regions with similar topography and wind characteristics.We thank D. Jacinto and T. Silva for help during field work and the Port of Sines Authority (APS) for providing oceanographic and meteorological data. Financial support was provided by FCT (POCI/ MAR/57630/2004; PTDC/BIA-BEC/103734/2008 and PEst-OE/ MAR/UIO199/2011). The simulations were preformed in the computational facilities provided under FCT contract RECI/GEO-MET/0380/ 2012. Luísa Lamas was funded by the FCT under a Ph.D. grant (SFRH/ BD/69533/2010)

Physical oceanography of the western Iberia ecosystem: latest views and challenges.

The present review is focused on the mesoscale physical processes recognized in the Western Iberia Ecosystem, complementing earlier reviews dedicated to larger scales. Recent studies support the idea that the mesoscale processes, superimposed on the larger scale variability, are the major factor controlling the ecosystem functioning in the region. A complex structure of interleaved alongshore slope, shelf and coastal currents that interact with eddies, buoyant plumes, upwelling filaments and fronts, surface layer expressions of the subsurface circulation and internal waves is revealed by the latest research. All of these contribute in different ways to have an effect on the ecosystem. The supposedly less variable winter circulation also exhibits significant mesoscale activity, in the form of eddy shedding from the poleward slope current, intermittent upwelling events and transient nearshore poleward flows. The present incomplete knowledge of this complex system presents a number of challenges and questions that must be addressed if we are to arrive at a satisfactory understanding and predictive capability for the system as a whole

Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses

The Regional Ocean Modeling System ocean model is used to simulate the decadal evolution of the regional waters in offshore Iberia in response to atmospheric fields given by ECMWF ERA-40 (1961–2001) and ERA-Interim (1989–2008) reanalyses. The simulated sea surface temperature (SST) fields are verified against satellite AVHRR SST, and they are analysed to characterise the variability and trends of coastal upwelling in the region. Opposing trends in upwelling frequency are found at the northern limit, where upwelling has been decreasing in recent decades, and at its southern edge, where there is some evidence of increased upwelling. These results confirm previous observational studies and, more importantly, indicate that observed SST trends are not only due to changes in radiative or atmospheric heat fluxes alone but also due to changes in upwelling dynamics, suggesting that such a process may be relevant in climate change scenarios

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin) over a four-year period

From June 2004 to December 2007, samples were weekly collected at a fixed station located at the mouth of Ria de Aveiro (West Iberian Margin). We examined the seasonal and inter-annual fluctuations in composition and community structure of the phytoplankton in relation to the main environmental drivers and assessed the influence of the oceano-graphic regime, namely changes in frequency and intensity of upwelling events, over the dynamics of the phytoplankton assemblage. The samples were consistently handled and a final subset of 136 OTUs (taxa with relative abundance > 0.01%) was subsequently submitted to various multivariate analyses. The phytoplankton assemblage showed significant changes at all temporal scales but with an overriding importance of seasonality over longer-(inter-annual) or shorter-term fluctuations (upwelling-related). Sea-surface temperature, salinity and maximum upwelling index were retrieved as the main driver of seasonal change. Seasonal signal was most evident in the fluctuations of chlorophyll a concentration and in the high turnover from the winter to spring phytoplankton assemblage. The seasonal cycle of production and succession was disturbed by upwelling events known to disrupt thermal stratification and induce changes in the phytoplankton assemblage. Our results indicate that both the frequency and intensity of physical forcing were important drivers of such variability, but the outcome in terms of species composition was highly dependent on the available local pool of species and the timing of those events in relation to the seasonal cycle. We conclude that duration, frequency and intensity of upwelling events, which vary seasonally and inter-annually, are paramount for maintaining long-term phytoplankton diversity likely by allowing unstable coexistence and incorporating species turnover at different scales. Our results contribute to the understanding of the complex mechanisms of coastal phytoplankton dynamics in relation to changing physical forcing which is fundamental to improve predictability of future prospects under climate change.Portuguese Foundation for Science and Technology (FCT, Portugal) [SFRH/BPD/ 94562/2013]; FEDER funds; national funds; CESAM [UID/AMB/50017]; FCT/MEC through national funds; FEDERinfo:eu-repo/semantics/publishedVersio

Development and Application of Microsatellites in Carcinus maenas: Genetic Differentiation between Northern and Central Portuguese Populations

Carcinus maenas, the common shore crab of European coastal waters, has recently gained notoriety due to its globally invasive nature associated with drastic ecological and economic effects. The native ubiquity and worldwide importance of C. maenas has resulted in it becoming one of the best-studied estuarine crustacean species globally. Accordingly, there is significant interest in investigating the population genetic structure of this broadly distributed crab along European and invaded coastlines. Here, we developed polymerase chain reaction (PCR) primers for one dinucleotide and two trinucleotide microsatellite loci, resulting from an enrichment process based on Portuguese populations. Combining these three new markers with six existing markers, we examined levels of genetic diversity and population structure of C. maenas in two coastal regions from Northern and Central Portugal. Genotypes showed that locus polymorphism ranged from 10 to 42 alleles (N = 135) and observed heterozygosity per locus ranged from 0.745 to 0.987 with expected heterozygosity ranging from 0.711 to 0.960; values typical of marine decapods. The markers revealed weak, but significant structuring among populations (global FST = 0.004) across a 450 km (over-water distance) spatial scale. Combinations of these and existing markers will be useful for studying population genetic parameters at a range of spatial scales of C. maenas throughout its expanding species range

Historic 2005 toxic bloom of Alexandrium fundyense in the western Gulf of Maine : 2. Coupled biophysical numerical modeling

Author Posting. © American Geophysical Union, 2008. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 113 (2008): C07040, doi:10.1029/2007JC004602.A coupled physical/biological modeling system was used to hindcast a massive Alexandrium fundyense bloom that occurred in the western Gulf of Maine in 2005 and to investigate the relative importance of factors governing the bloom's initiation and development. The coupled system consists of a state-of-the-art, free-surface primitive equation Regional Ocean Modeling System (ROMS) tailored for the Gulf of Maine (GOM) using a multinested configuration, and a population dynamics model for A. fundyense. The system was forced by realistic momentum and buoyancy fluxes, tides, river runoff, observed A. fundyense benthic cyst abundance, and climatological nutrient fields. Extensive comparisons were made between simulated (both physical and biological) fields and in situ observations, revealing that the hindcast model is capable of reproducing the temporal evolution and spatial distribution of the 2005 bloom. Sensitivity experiments were then performed to distinguish the roles of three major factors hypothesized to contribute to the bloom: (1) the high abundance of cysts in western GOM sediments; (2) strong ‘northeaster' storms with prevailing downwelling-favorable winds; and (3) a large amount of fresh water input due to abundant rainfall and heavy snowmelt. Model results suggest the following. (1) The high abundance of cysts in western GOM was the primary factor of the 2005 bloom. (2) Wind-forcing was an important regulator, as episodic bursts of northeast winds caused onshore advection of offshore populations. These downwelling favorable winds accelerated the alongshore flow, resulting in transport of high cell concentrations into Massachusetts Bay. A large regional bloom would still have happened, however, even with normal or typical winds for that period. (3) Anomalously high river runoff in 2005 resulted in stronger buoyant plumes/currents, which facilitated the transport of cell population to the western GOM. While affecting nearshore cell abundance in Massachusetts Bay, the buoyant plumes were confined near to the coast, and had limited impact on the gulf-wide bloom distribution.Research support was provided through the Woods Hole Center for Oceans and Human Health, National Science Foundation (NSF) grant OCE-0430723 and National Institute of Environmental Health Science (NIEHS) grant 1-P50-ES012742-01, ECOHAB program through NSF grant OCE-9808173 and NOAA grant NA96OP0099, and GOMTOX program through NOAA grant NA06NOS4780245