Cognitive radio-enabled Internet of Vehicles (IoVs): a cooperative spectrum sensing and allocation for vehicular communication

Internet of Things (IoTs) era is expected to empower all aspects of Intelligent Transportation System (ITS) to improve transport safety and reduce road accidents. US Federal Communication Commission (FCC) officially allocated 75MHz spectrum in the 5.9GHz band to support vehicular communication which many studies have found insufficient. In this paper, we studied the application of Cognitive Radio (CR) technology to IoVs in order to increase the spectrum resource opportunities available for vehicular communication, especially when the officially allocated 75MHz spectrum in 5.9GHz band is not enough due to high demands as a result of increasing number of connected vehicles as already foreseen in the near era of IoTs. We proposed a novel CR Assisted Vehicular NETwork (CRAVNET) framework which empowers CR enabled vehicles to make opportunistic usage of licensed spectrum bands on the highways. We also developed a novel co-operative three-state spectrum sensing and allocation model which makes CR vehicular secondary units (SUs) aware of additional spectrum resources opportunities on their current and future positions and applies optimal sensing node allocation algorithm to guarantee timely acquisition of the available channels within a limited sensing time. The results of the theoretical analyses and simulation experiments have demonstrated that the proposed model can significantly improve the performance of a cooperative spectrum sensing and provide vehicles with additional spectrum opportunities without harmful interference against the Primary Users (PUs) activities

Timely and reliable packets delivery over Internet of Vehicles (IoVs) for road accidents prevention: a cross-layer approach

With the envisioned era of Internet of Things (IoTs), all aspects of Intelligent Transportation Systems (ITS) will be connected to improve transport safety, relieve traffic congestion, reduce air pollution, enhance the comfort of transportation and significantly reduce road accidents. In IoVs, regular exchange of current position, direction, velocity, etc., enables mobile vehicles to predict an upcoming accident and alert the human drivers in time or proactively take precautionary actions to avoid the accident. The actualization of this concept requires the use of channel access protocols that can guarantee reliable and timely broadcast of safety messages. This paper investigates the application of network coding concept to increase content of every transmission and achieve improved broadcast reliability with less number of retransmission. In particular, we proposed Code Aided Retransmission-based Error Recovery (CARER) scheme, introduced an RTB/CTB handshake to overcome hidden node problem and reduce packets collision rate. In order to avoid broadcast storm problem associated with the use of RTB/CTB packet in a broadcast transmission, we developed a rebroadcasting metric used to successfully select a vehicle to rebroadcast the encoded message. The performance of CARER protocol is clearly shown with detailed theoretical analysis and further validated with simulation experiments

Reliable and enhanced cooperative cross-layer medium access control scheme for vehicular communication

In an unreliable cluster-based, broadcast vehicular network setting, we investigate the transmission reliability and throughput performance of random network coding (RNC) as a function of the percentage of packet generation rate and transmit power to noise ratio. In the paper, a novel scheme called reliable and efficient cooperative cross-layer MAC (RECMAC) is proposed. The proposed scheme consists of a source vehicle broadcasting packets to a set of receivers (i.e. one-to-many) over independent broadcast erasure channels. The source vehicle performs RNC on N packets and broadcasts the encoded message to a set of receivers. In each hop, several vehicles form a cluster and cooperatively transmit the encoded or re-encoded packet. The combination of RNC, cluster based, and cooperative communications enables RECMAC to optimally minimize data redundancy, which means less overhead, and improve reliability as opposed to coding-based solutions. Theoretical analyses and simulation results show that under the same conditions RECMAC scheme can achieve improved performance in terms of transmission reliability and throughput

Multi-head attention-based masked sequence model for mapping functional brain networks

The investigation of functional brain networks (FBNs) using task-based functional magnetic resonance imaging (tfMRI) has gained significant attention in the field of neuroimaging. Despite the availability of several methods for constructing FBNs, including traditional methods like GLM and deep learning methods such as spatiotemporal self-attention mechanism (STAAE), these methods have design and training limitations. Specifically, they do not consider the intrinsic characteristics of fMRI data, such as the possibility that the same signal value at different time points could represent different brain states and meanings. Furthermore, they overlook prior knowledge, such as task designs, during training. This study aims to overcome these limitations and develop a more efficient model by drawing inspiration from techniques in the field of natural language processing (NLP). The proposed model, called the Multi-head Attention-based Masked Sequence Model (MAMSM), uses a multi-headed attention mechanism and mask training approach to learn different states corresponding to the same voxel values. Additionally, it combines cosine similarity and task design curves to construct a novel loss function. The MAMSM was applied to seven task state datasets from the Human Connectome Project (HCP) tfMRI dataset. Experimental results showed that the features acquired by the MAMSM model exhibit a Pearson correlation coefficient with the task design curves above 0.95 on average. Moreover, the model can extract more meaningful networks beyond the known task-related brain networks. The experimental results demonstrated that MAMSM has great potential in advancing the understanding of functional brain networks

Breast cancer survival analysis with molecular subtypes : an initial step

As a predominant threat to women's health world-wide, breast cancer has become increasingly important in on-cology research. The discovery of molecular subtypes of breast cancer has led to more subtype oriented treatment and prognosis prediction. Effective prognosis models help to estimate the recurrence as well as the quality and duration of survival, leading to more personalized treatments. However, most traditional prognostic models either ignore molecular subtypes or only make limited use of them. The roles of molecular subtypes in the development and treatment of breast cancer have not been fully revealed. With the over 1200 cases collected by Sir Run Run Shaw Hospital of Zhejiang University in the past two decades, we aim to improve understanding of molecular subtypes and their impacts on the prognosis via data analysis in the long run. As the initial stage, this short paper presents our preliminary work of logistic regression experiments with the data. Though molecular subtypes have not been included the tentative model, they are to be explored further in following stages

Molecular Characterization of Magnesium Chelatase in Soybean [Glycine max (L.) Merr.]

Soybean (Glycine max) seed yields rely on the efficiency of photosynthesis, which is poorly understood in soybean. Chlorophyll, the major light harvesting pigment, is crucial for chloroplast biogenesis and photosynthesis. Magnesium chelatase catalyzes the insertion of Mg2+ into protoporphyrin IX in the first committed and key regulatory step of chlorophyll biosynthesis. It consists of three types of subunits, ChlI, ChlD, and ChlH. To gain a better knowledge of chlorophyll biosynthesis in soybean, we analyzed soybean Mg-chelatase subunits and their encoding genes. Soybean genome harbors 4 GmChlI genes, 2 GmChlD genes, and 3 GmChlH genes, likely evolved from two rounds of gene duplication events. The qRT-PCR analysis revealed that GmChlI, GmChlD, and GmChlH genes predominantly expressed in photosynthetic tissues, but the expression levels among paralogs are different. In silicon promoter analyses revealed these genes harbor different cis-regulatory elements in their promoter regions, suggesting they could differentially respond to various environmental and developmental signals. Subcellular localization analyses illustrated that GmChlI, GmChlD, and GmChlH isoforms are all localized in chloroplast, consistent with their functions. Yeast two hybrid and bimolecular fluorescence complementation (BiFC) assays showed each isoform has a potential to be assembled into the Mg-chelatase holocomplex. We expressed each GmChlI, GmChlD, and GmChlH isoform in Arabidopsis corresponding mutants, and results showed that 4 GmChlI and 2 GmChlD isoforms and GmChlH1 could rescue the severe phenotype of Arabidopsis mutants, indicating that they maintain normal biochemical functions in vivo. However, GmChlH2 and GmChlH3 could not completely rescue the chlorotic phenotype of Arabidopsis gun5-2 mutant, suggesting that the functions of these two proteins could be different from GmChlH1. Considering the differences shown on primary sequences, biochemical functions, and gene expression profiles, we conclude that the paralogs of each soybean Mg-chelatase subunit have diverged more or less during evolution. Soybean could have developed a complex regulatory mechanism to control chlorophyll content to adapt to different developmental and environmental situations

Factors in the occurrence and restoration of hypoparathyroidism after total thyroidectomy for thyroid cancer patients with intraoperative parathyroid autotransplantation

IntroductionPostoperative hypoparathyroidism (POH) is the most common and important complication for thyroid cancer patients who undergo total thyroidectomy. Intraoperative parathyroid autotransplantation has been demonstrated to be essential in maintaining functional parathyroid tissue, and it has clinical significance in identifying essential factors of serum parathyroid hormone (PTH) levels for patients with parathyroid autotransplantation. This retrospective cohort study aimed to comprehensively investigate influential factors in the occurrence and restoration of POH for patients who underwent total thyroidectomy with intraoperative parathyroid autotransplantation (TTIPA).MethodThis study was conducted in a tertiary referral hospital, with a total of 525 patients who underwent TTIPA. The postoperative serum PTH levels were collected after six months, and demographic characteristics, clinical features and associated operative information were analyzed.ResultsA total of 66.48% (349/525) of patients who underwent TTIPA were diagnosed with POH. Multivariate logistic regression indicated that Hashimoto’s thyroiditis (OR=1.93, 95% CI: 1.09-3.42), P=0.024), the number of transplanted parathyroid glands (OR=2.70, 95% CI: 1.91-3.83, P<0.001) and postoperative blood glucose levels (OR=1.36, 95% CI: 1.06-1.74, P=0.016) were risk factors for POH, and endoscopic surgery (OR=0.39, 95% CI: 0.22-0.68, P=0.001) was a protective factor for POH. Multivariate Cox regression indicated that PTG autotransplantation patients with same-side central lymph node dissection (CLND) (HR=0.50; 95% CI: 0.34-0.73, P<0.001) demonstrated a longer time for increases PTH, and female patients (HR=1.35, 95% CI: 1.00-1.81, P=0.047) were more prone to PTH increases. Additionally, PTG autotransplantation with same-side CLND (HR=0.56, 95% CI: 0.38-0.82, P=0.003) patients had a longer time to PTH restoration, and patients with endoscopic surgery (HR=1.54, 95% CI: 1.04-2.28, P=0.029) were more likely to recover within six months.ConclusionHigh postoperative fasting blood glucose levels, a large number of transplanted PTGs, open surgery and Hashimoto’s thyroiditis are risk factors for postoperative POH in TTIPA patients. Elevated PTH levels occur earlier in female patients and patients without CLND on the transplant side. PTH returns to normal earlier in patients without CLND and endoscopic surgery on the transplant side

Inherited chromosomally integrated human herpesvirus 6 genomes are ancient, intact and potentially able to reactivate from telomeres

The genomes of human herpesviruses 6A and 6B (HHV-6A and HHV-6B) have the capacity to integrate into telomeres, the essential capping structures of chromosomes that play roles in cancer and ageing. About 1% of people worldwide are carriers of chromosomally integrated HHV-6 (ciHHV-6), which is inherited as a genetic trait. Understanding the consequences of integration for the evolution of the viral genome, for the telomere and for the risk of disease associated with carrier status is hampered by a lack of knowledge about ciHHV-6 genomes. Here, we report an analysis of 28 ciHHV-6 genomes and show that they are significantly divergent from the few modern non-integrated HHV-6 strains for which complete sequences are currently available. In addition ciHHV-6B genomes in Europeans are more closely related to each other than to ciHHV-6B genomes from China and Pakistan, suggesting regional variation of the trait. Remarkably, at least one group of European ciHHV-6B carriers has inherited the same ciHHV-6B genome, integrated in the same telomere allele, from a common ancestor estimated to have existed 24,500 ±10,600 years ago. Despite the antiquity of some, and possibly most, germline HHV-6 integrations, the majority of ciHHV-6B (95%) and ciHHV-6A (72%) genomes contain a full set of intact viral genes and therefore appear to have the capacity for viral gene expression and full reactivation. IMPORTANCE: Inheritance of HHV-6A or HHV-6B integrated into a telomere occurs at a low frequency in most populations studied to date but its characteristics are poorly understood. However, stratification of ciHHV-6 carriers in modern populations due to common ancestry is an important consideration for genome-wide association studies that aim to identify disease risks for these people. Here we present full sequence analysis of 28 ciHHV-6 genomes and show that ciHHV-6B in many carriers with European ancestry most likely originated from ancient integration events in a small number of ancestors. We propose that ancient ancestral origins for ciHHV-6A and ciHHV-6B are also likely in other populations. Moreover, despite their antiquity, all of the ciHHV-6 genomes appear to retain the capacity to express viral genes, and most are predicted to be capable of full viral reactivation. These discoveries represent potentially important considerations in immune-compromised patients, in particular in organ transplantation and in stem cell therapy

Human telomeres that carry an integrated copy of human herpesvirus 6 are often short and unstable, facilitating release of the viral genome from the chromosome

Linear chromosomes are stabilized by telomeres, but the presence of short dysfunctional telomeres triggers cellular senescence in human somatic tissues, thus contributing to ageing. Approximately 1% of the population inherits a chromosomally integrated copy of human herpesvirus 6 (CI-HHV-6), but the consequences of integration for the virus and for the telomere with the insertion are unknown. Here we show that the telomere on the distal end of the integrated virus is frequently the shortest measured in somatic cells but not the germline. The telomere carrying the CI-HHV-6 is also prone to truncations that result in the formation of a short telomere at a novel location within the viral genome. We detected extra-chromosomal circular HHV-6 molecules, some surprisingly comprising the entire viral genome with a single fully reconstituted direct repeat region (DR) with both terminal cleavage and packaging elements (PAC1 and PAC2). Truncated CI-HHV-6 and extra-chromosomal circular molecules are likely reciprocal products that arise through excision of a telomere-loop (t-loop) formed within the CI-HHV-6 genome. In summary, we show that the CI-HHV-6 genome disrupts stability of the associated telomere and this facilitates the release of viral sequences as circular molecules, some of which have the potential to become fully functioning viruses