Domain-specific ChatBots for Science using Embeddings

Large language models (LLMs) have emerged as powerful machine-learning systems capable of handling a myriad of tasks. Tuned versions of these systems have been turned into chatbots that can respond to user queries on a vast diversity of topics, providing informative and creative replies. However, their application to physical science research remains limited owing to their incomplete knowledge in these areas, contrasted with the needs of rigor and sourcing in science domains. Here, we demonstrate how existing methods and software tools can be easily combined to yield a domain-specific chatbot. The system ingests scientific documents in existing formats, and uses text embedding lookup to provide the LLM with domain-specific contextual information when composing its reply. We similarly demonstrate that existing image embedding methods can be used for search and retrieval across publication figures. These results confirm that LLMs are already suitable for use by physical scientists in accelerating their research efforts.Comment: 12 pages, 5 figure

Advances in Kriging-Based Autonomous X-Ray Scattering Experiments.

Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimental control, based on generating a surrogate model to interpolate experimental data, and a corresponding uncertainty model, which are computed using a Gaussian process regression known as ordinary Kriging (OK). We demonstrated the successful application of this method to exploring materials science problems using x-ray scattering measurements at a synchrotron beamline. Here, we report several improvements to this methodology that overcome limitations of traditional Kriging methods. The variogram underlying OK is global and thus insensitive to local data variation. We augment the Kriging variance with model-based measures, for instance providing local sensitivity by including the gradient of the surrogate model. As with most statistical regression methods, OK minimizes the number of measurements required to achieve a particular model quality. However, in practice this may not be the most stringent experimental constraint; e.g. the goal may instead be to minimize experiment duration or material usage. We define an adaptive cost function, allowing the autonomous method to balance information gain against measured experimental cost. We provide synthetic and experimental demonstrations, validating that this improved algorithm yields more efficient autonomous data collection

Quarkonium states in a complex-valued potential

We calculate quarkonium binding energies using a realistic complex-valued potential for both an isotropic and anisotropic quark-gluon plasma. We determine the disassociation temperatures of the ground and first excited states considering both the real and imaginary parts of the binding energy. We show that the effect of momentum-space anisotropy is smaller on the imaginary part of the binding energy than on the real part of the binding energy. In the case that one assumes an isotropic plasma, we find disassociation temperatures for the J/psi, Upsilon and chi_b of 1.6 T_c, 2.8 T_c, and 1.5 T_c, respectively. We find that a finite oblate momentum-space anisotropy increases the disassociation temperature for all states considered and results in a splitting of the p-wave states associated with the chi_b first excited state of bottomonium.Comment: 23 pages, 9 figures; v4: subtraction of V_infinity corrected to only subtract Re[V_infinity

2011 Bald Eagle (\u3ci\u3eHaliaeetus leucocephalus\u3c/i\u3e) Statewide Nesting Survey

The Bald Eagle (Halioeetus leucocephalus) was extirpated as a breeding species in Nebraska for most of the 20th Century. Nebraska\u27s first active, successful, modern Bald Eagle nest was near Valley, Douglas County, in 1991 (Farrar 1991). Jorgensen et al. (2010) summarized modern Bald Eagle nesting records in Nebraska from 1950 to 2009. Jorgensen et al. (2010) noted the highest annual count of active nests was 54 in 2007. In this note we summarize the 2011 Bald Eagle nesting records in Nebraska

Diversity and abundance of butterfly species (Lepidoptera) fauna in Federal University of Agriculture, Makurdi forestry nursery, Benue State, Nigeria

Butterflies belong to one of the most important taxa of insects. Understanding their significance in an ecosystem as an environmental health indicator and pollination of flowering plants is crucial to achieving sustainability and conservation of floral diversity. Owing to habitat destruction due to some anthropogenic activities, butterflies are fast disappearing and at present, their survival is under threat. The study assessed the diversity and abundance of butterfly species in the Federal University of Agriculture, Makurdi forestry nursery, Nigeria. Line transects were used to survey three habitats within and around the forestry nursery using handheld sweep nets in March and April, 2016. Data were analyzed using descriptive statistics and One-way analysis of variance. A total of 337 individuals representing 17 butterfly species belonging to 5 families were recorded across the three habitat types. Out of these, members belonging to the family Nymphalidae were the most common with 7 species being recorded accounting for 41.2% of the total species and 26.7% of total number of individuals collected. Species richness, evenness and diversity varied from habitat to habitat and decreased from dry land area to swampy area (D= 2.336 – 1.966), (J= 0.336 – 0.236), (H1= 1.394 – 0.955). There was no significant different in species composition/richness across habitat types at 0.05%. It was recommended that management effort towards conservation be put in place so as to ensure sustenance of butterflies and ecosystem services derived from them, and further exploration of butterfly species be done to update this checklist.Keywords: Butterfly, Species, Forestry Nursery, Diversity, Abundanc

Testing the diffusion hypothesis as a mechanism of self-healing in Disperse orange 11 doped in PMMA

In this work, we show that reversible photodegradation of Disperse Orange 11 doped in PMMA is not due to dye diffusion - a common phenomenon observed in many dye-doped polymers. The change in linear absorbance due to photodegradation of the material shows an isobestic point, which is consistent with the formation of a quasi-stable damaged species. Spatially-resolved amplified spontaneous emission and fluorescence, both related to the population density, are measured by scanning the pump beam over a burn mark. A numerical model of the time evolution of the population density due to diffusion is inconsistent with the experimental data suggesting that diffusion is not responsible.Comment: 5 pages, 6 figure

Evidence of stratification in binary colloidal films from microbeam X-ray scattering: Toward optimizing the evaporative assembly processes for coatings

Colloidal films have many important applications where a layered configuration is desirable, including flexible electronics, anti-reflective coatings, and anti-microbial paints. We report stratification during evaporative film formation in binary colloidal dispersion, probed using a novel microbeam small-angle X-ray scattering (SAXS) technique. To our knowledge, SAXS approaches have not been used to experimentally obtain quantitative data of concentration profiles in multicomponent colloidal films. We measured the local scattering of a film at different vertical locations using a microfocused X-ray beam and determined particle concentrations at different film depths using a linear combination analysis of the mixed film and pure film scattering data. Using small particle size ratios ranging from 2.55 to 1.25, we experimentally observed and quantify three distinct stratification configurations: inverted small on- top, large-on-top, and no stratification. Our results show some agreement with a previously proposed stratification state diagram, although there are some limitations. Experimental verification of these stratification phenomena is critical to fully understanding the physics of particle movement and structure development during film formation, which is crucial for optimizing evaporative assembly processes for coatings.Financial support for this work was provided by the National Science Foundation through award CBET-1335787 and a Department of Education Graduate Assistance in Areas of National Need (GAANN) fellowship for A. J. C., Award P200A160163. This research used beamline 11-BM, CMS, of the National Synchrotron Light Source II, a U.S. Department of Energy (DOE) Office of Science User Facility operated for the DOE Office of Science by Brookhaven National Laboratory under Contract No. DE-SC0012704

Pressure Modulator Radiometer (PMR) tests

The pressure modulator technique was evaluated for monitoring pollutant gases in the Earth's atmosphere of altitude levels corresponding to the mid and lower troposphere. Using an experimental set up and a 110 cm sample cell, pressure modulator output signals resulting from a range of gas concentrations in the sample cell were examined. Then a 20 cm sample cell was modified so that trace gas properties in the atmosphere could be simulated in the laboratory. These gas properties were measured using an infrared sensor