Elevated CO₂ and food ration affect growth but not the size-based hierarchy of a reef fish

Under projected levels of ocean acidification, shifts in energetic demands and food availability could interact to effect the growth and development of marine organisms. Changes to individual growth rates could then flow on to influence emergent properties of social groups, particularly in species that form size-based hierarchies. To test the potential interactive effects of (1) food availability, (2) elevated CO₂ during juvenile development, and (3) parental experience of elevated CO₂ on the growth, condition and size-based hierarchy of juvenile fish, we reared orange clownfish (Amphiprion percula) for 50 days post-hatching in a fully orthogonal design. Development in elevated CO₂ reduced standard length and weight of juveniles, by 9% and 11% respectively, compared to ambient. Development under low food availability reduced length and weight of juveniles by 7% and 15% respectively, compared to high food. Parental exposure to elevated CO₂ restored the length of juveniles to that of controls, but it did not restore weight, resulting in juveniles from elevated CO₂ parents exhibiting 33% lower body condition when reared in elevated CO₂. The body size ratios (relative size of a fish from the rank above) within juvenile groups were not affected by any treatment, suggesting relative robustness of group-level structure despite alterations in individual size and condition. This study demonstrates that both food availability and elevated CO₂ can influence the physical attributes of juvenile reef fish, but these changes may not disrupt the emergent group structure of this social species, at least amongst juveniles

No Reliable Association between Runs of Homozygosity and Schizophrenia in a Well-Powered Replication Study

It is well known that inbreeding increases the risk of recessive monogenic diseases, but it is less certain whether it contributes to the etiology of complex diseases such as schizophrenia. One way to estimate the effects of inbreeding is to examine the association between disease diagnosis and genome-wide autozygosity estimated using runs of homozygosity (ROH) in genome-wide single nucleotide polymorphism arrays. Using data for schizophrenia from the Psychiatric Genomics Consortium (n = 21,868), Keller et al. (2012) estimated that the odds of developing schizophrenia increased by approximately 17% for every additional percent of the genome that is autozygous (β = 16.1, CI(β) = [6.93, 25.7], Z = 3.44, p = 0.0006). Here we describe replication results from 22 independent schizophrenia case-control datasets from the Psychiatric Genomics Consortium (n = 39,830). Using the same ROH calling thresholds and procedures as Keller et al. (2012), we were unable to replicate the significant association between ROH burden and schizophrenia in the independent PGC phase II data, although the effect was in the predicted direction, and the combined (original + replication) dataset yielded an attenuated but significant relationship between Froh and schizophrenia (β = 4.86,CI(β) = [0.90,8.83],Z = 2.40,p = 0.02). Since Keller et al. (2012), several studies reported inconsistent association of ROH burden with complex traits, particularly in case-control data. These conflicting results might suggest that the effects of autozygosity are confounded by various factors, such as socioeconomic status, education, urbanicity, and religiosity, which may be associated with both real inbreeding and the outcome measures of interest

Estimation of Genetic Correlation via Linkage Disequilibrium Score Regression and Genomic Restricted Maximum Likelihood

J. Lönnqvist on työryhmän Psychiat Genomics Consortium jäsen.Genetic correlation is a key population parameter that describes the shared genetic architecture of complex traits and diseases. It can be estimated by current state-of-art methods, i.e., linkage disequilibrium score regression (LDSC) and genomic restricted maximum likelihood (GREML). The massively reduced computing burden of LDSC compared to GREML makes it an attractive tool, although the accuracy (i.e., magnitude of standard errors) of LDSC estimates has not been thoroughly studied. In simulation, we show that the accuracy of GREML is generally higher than that of LDSC. When there is genetic heterogeneity between the actual sample and reference data from which LD scores are estimated, the accuracy of LDSC decreases further. In real data analyses estimating the genetic correlation between schizophrenia (SCZ) and body mass index, we show that GREML estimates based on similar to 150,000 individuals give a higher accuracy than LDSC estimates based on similar to 400,000 individuals (from combinedmeta-data). A GREML genomic partitioning analysis reveals that the genetic correlation between SCZ and height is significantly negative for regulatory regions, which whole genome or LDSC approach has less power to detect. We conclude that LDSC estimates should be carefully interpreted as there can be uncertainty about homogeneity among combined meta-datasets. We suggest that any interesting findings from massive LDSC analysis for a large number of complex traits should be followed up, where possible, with more detailed analyses with GREML methods, even if sample sizes are lesser.Peer reviewe

Social systems in habitat-specialist reef fishes: key concepts in evolutionary ecology

A major focus in evolutionary ecology lies in explaining the evolution and maintenance of social systems. Although most theoretical formulations of social system evolution were initially inspired by studies of birds, mammals, and insects, incorporating a wider taxonomic perspective is important for testing deeply entrenched theory. Here, we review the contribution of studies of habitat-specialist coral reef fishes to our understanding of the evolutionary ecology of animal social systems. These fishes are ecologically similar but display remarkable variation in mating systems, social organization, and sex allocation strategies. By reviewing recent research, we demonstrate their amenability for experimental testing of key concepts in social evolution and for generating novel insights, including the ultimate reasons for female reproductive suppression, group living, and bidirectional sex change. Habitat-specialist reef fishes are a tried and tested group of model organisms for advancing our understanding of the evolution and ecology of social systems in animals

Habitat patch size, facultative monogamy and sex change in a coral-dwelling fish, Caracanthus unipinna

We investigated the inter-relationships between coral colony size, social group size, mating system, and patterns of sex allocation in the pygmy coral croucher, Caracanthus unipinna (Caracanthidae), an obligate coral-dwelling fish. Histological examination of the gonads from all individuals in social groups revealed that the predominant mating system was harem polygyny. However, both group size and mating system co-varied with coral colony size, with pair forming and monogamy occurring on small corals and group forming and harem polygyny on large corals. This species therefore displays mating system plasticity in response to varying habitat patch size. Within-group sexual size dimorphism and individual gonad structure indicate that C. unipinna is also likely to be a protogynous hermaphrodite. These social and reproductive features of C. unipinna contrast with some other coral-dwelling fishes, which display a lack of social and mating system plasticity in response to habitat patch size, and either bi-directional or protandrous sex change. Possible reasons for this dichotomy include differences in spawning mode, parental care and levels of intrasexual aggression

Further Insights into Invasion: Field Observations of Behavioural Interactions between an Invasive and Critically Endangered Freshwater Crayfish Using Baited Remote Underwater Video (BRUV)

Competitive behavioural interactions between invasive and native freshwater crayfish are recognised as a key underlying mechanism behind the displacement of natives by invaders. However, in situ investigations into behavioural interactions between invasive and native crayfish are scarce. In Australian freshwater systems, the invasive Cherax destructor has spread into the ranges of many native Euastacus species, including the critically endangered Euastacus dharawalus. Staged contests between the two species in a laboratory setting found E. dharawalus to be the dominant competitor, however, this has yet to be corroborated in situ. Here, we used baited remote underwater video (BRUV) to examine in situ intra- and inter-specific behavioural interactions between E. dharawalus and C. destructor. We sought to evaluate patterns of dominance and differential contest dynamics between the species to provide indications of competition between the two species. We found E. dharawalus to be dominant over C. destructor based on pooled interspecific interaction data and size-grouped interactions where C. destructor was the smaller opponent. Alarmingly, however, when C. destructor was within a 10% size difference the dominance of E. dharawalus was lost, contrasting with the outcomes of the laboratory-staged study. In addition, we report that small C. destructor initiated significantly more contests than larger conspecifics and larger E. dharawalus, a pattern that was not observed in smaller E. dharawalus. Further, intraspecific interactions between C. destructor were significantly longer in duration than intraspecific interactions between E. dharawalus, indicating a willingness to continue fighting. Concerningly, these outcomes point towards inherent and greater aggressiveness in C. destructor relative to E. dharawalus and that only larger E. dharawalus hold a competitive advantage over C. destructor. Therefore, we conclude that C. destructor represents a substantial threat to E. dharawalus through competitive behavioural interactions. Further, due to the disparity between our findings and those produced from laboratory-staged contests, we recommend the use of in situ studies when determining the behavioural impacts of invasive crayfish on natives