Preparing for Uncertain Water Futures: An Analysis of Climate Change Impacts on Southern Sierra Nevada Snowpack, Infrastructure Vulnerability, and Implications for San Joaquin Valley Groundwater Management

Increased average annual temperatures due to anthropogenic climate change will impact snowpack in the Sierra Nevada region in two ways. First, an increasing share of precipitation will fall as rain instead of snow. Second, snowpack will melt earlier in the season. Earlier runoff driven by precipitation type change and earlier snowmelt necessitates earlier releases of water from dams for flood control. These earlier releases reduce the amount that can be stored for water supply. Analysis of instrumental and model snow water equivalent (SWE) data shows that climate models relied upon in state decision-making capture changes in peak SWE magnitude, but they do not estimate timing of peak SWE well. Future reductions in peak SWE magnitude and vulnerability of surface water storage infrastructure necessitates increased reliance on groundwater basins to store water. Groundwater pumping allocations combined with a replenishment credit can incentivize the diversion of floodwater for underground storage, which would help mitigate economic harm that arises from climate change impacts on snowpack as well as implementation of the 2014 Sustainable Groundwater Management Act

Calibrating amino acid δ\u3csup\u3e13\u3c/sup\u3eC and δ\u3csup\u3e15\u3c/sup\u3eN offsets between polyp and protein skeleton to develop proteinaceous deep-sea corals as paleoceanographic archives.

Compound-specific stable isotopes of amino acids (CSI-AA) from proteinaceous deep-sea coral skeletons have the potential to improve paleoreconstructions of plankton community composition, and our understanding of the trophic dynamics and biogeochemical cycling of sinking organic matter in the Ocean. However, the assumption that the molecular isotopic values preserved in protein skeletal material reflect those of the living coral polyps has never been directly investigated in proteinaceous deep-sea corals. We examined CSI-AA from three genera of proteinaceous deep-sea corals from three oceanographically distinct regions of the North Pacific: Primnoa from the Gulf of Alaska, Isidella from the Central California Margin, and Kulamanamana from the North Pacific Subtropical Gyre. We found minimal offsets in the δ13C values of both essential and non-essential AAs, and in the δ15N values of source AAs, between paired samples of polyp tissue and protein skeleton. Using an essential AA δ13C fingerprinting approach, we show that estimates of the relative contribution of eukaryotic microalgae and prokaryotic cyanobacteria to the sinking organic matter supporting deep-sea corals are the same when calculated from polyp tissue or recently deposited skeletal tissue. The δ15N values of trophic AAs in skeletal tissue, on the other hand, were consistently 3–4‰ lower than polyp tissue for all three genera. We hypothesize that this offset reflects a partitioning of nitrogen flux through isotopic branch points in the synthesis of polyp (fast turnover tissue) and skeleton (slow, unidirectional incorporation). This offset indicates an underestimation, albeit correctable, of approximately half a trophic position from gorgonin protein-based deep-sea coral skeleton. Together, our observations open the door for applying many of the rapidly evolving CSI-AA based tools developed for metabolically active tissues in modern systems to archival coral tissues in a paleoceanographic context

Impact of skeletal heterogeneity and treatment method on interpretation of environmental variability from the proteinaceous skeletons of deep-sea gorgonian octocorals

The stable isotope geochemistry of gorgonian octocoral skeletons facilitates detailed time series reconstructions of nutrient biogeochemistry. However, comparisons among reconstructions from different locations require realistic estimates of the uncertainty surrounding each measured geochemical value. Here, we determine quantitative uncertainties related to 1) standard skeletal pretreatment in preparation for stable isotopic analysis and 2) biological variability associated with a heterogeneous isotopic composition of the gorgonin skeleton. We found that the 5% HCl pretreatment required for the δ13C measurements does not significantly impact the δ15N values of the skeleton nor the reproducibility of the δ15N measurements. In contrast, while 5% HCl pretreatment significantly altered bulk δ13C values via removal of CaCO3, it did not change amino acid δ13C values in the organic skeleton. We found that the variance of repeat measurements of skeleton samples formed contemporaneously and homogenized skeleton for both δ13C and δ15N exceeded that of instrumental uncertainty of an acetanilide standard. This indicates that instrumental uncertainty underestimates the true precision of an isotopic measurement of the organic skeleton. Furthermore, measurements of contemporaneous skeleton around the circumference of an octocoral colony yielded variability exceeding that of homogenized skeleton. Based on these results, we find that 1) both δ13C and δ15N values can be measured simultaneously in pretreated skeleton, 2) growth bands should be homogenized prior to analysis, and 3) reported error should include uncertainty due to biological effects determined from repeat analysis of homogenized skeleton and not just instrument error to reduce false significant differences. Our results present an important protocol for processing proteinaceous octocoral skeletons and propagating uncertainty to more accurately reconstruct nutrient dynamics from proteinaceous deep-sea octocoral skeletons

Freshening of the Alaska Coastal Current recorded by coralline algal Ba/Ca ratios

Arctic Ocean freshening can exert a controlling influence on global climate, triggering strong feedbacks on ocean‐atmospheric processes and affecting the global cycling of the world’s oceans. Glacier‐fed ocean currents such as the Alaska Coastal Current are important sources of freshwater for the Bering Sea shelf, and may also influence the Arctic Ocean freshwater budget. Instrumental data indicate a multiyear freshening episode of the Alaska Coastal Current in the early 21st century. It is uncertain whether this freshening is part of natural multidecadal climate variability or a unique feature of anthropogenically induced warming. In order to answer this, a better understanding of past variations in the Alaska Coastal Current is needed. However, continuous long‐term high‐resolution observations of the Alaska Coastal Current have only been available for the last 2 decades. In this study, specimens of the long‐lived crustose coralline alga Clathromorphum nereostratum were collected within the pathway of the Alaska Coastal Current and utilized as archives of past temperature and salinity. Results indicate that coralline algal Mg/Ca ratios provide a 60 year record of sea surface temperatures and track changes of the Pacific Decadal Oscillation, a pattern of decadal‐to‐multidecadal ocean‐atmosphere climate variability centered over the North Pacific. Algal Ba/Ca ratios (used as indicators of coastal freshwater runoff) are inversely correlated to instrumentally measured Alaska Coastal Current salinity and record the period of freshening from 2001 to 2006. Similar multiyear freshening events are not evident in the earlier portion of the 60 year Ba/Ca record. This suggests that the 21st century freshening of the Alaska Coastal Current is a unique feature related to increasing glacial melt and precipitation on mainland Alaska

CD4 intragenic SNPs associate with HIV-2 plasma viral load and CD4 count in a community-based study from Guinea-Bissau, West Africa.

OBJECTIVES: The human genetics of HIV-2 infection and disease progression is understudied. Therefore, we studied the effect of variation in 2 genes that encode products critical to HIV pathogenesis and disease progression: CD4 and CD209. DESIGN: This cross-sectional study consisted of 143 HIV-2, 30 HIV-1 + HIV-2 and 29 HIV-1-infected subjects and 194 uninfected controls recruited from rural Guinea-Bissau. METHODS: We genotyped 14 CD4 and 4 CD209 single nucleotide polymorphisms (SNPs) that were tested for association with HIV infection, HIV-2 plasma viral load (high vs. low), and CD4 T-cell count (high vs. low). RESULTS: The most significant association was between a CD4 haplotype rs11575097-rs10849523 and high viral load [odds ratio (OR): = 2.37, 95% confidence interval (CI): 1.35 to 4.19, P = 0.001, corrected for multiple testing], suggesting increased genetic susceptibility to HIV-2 disease progression for individuals carrying the high-risk haplotype. Significant associations were also observed at a CD4 SNP (rs2255301) with HIV-2 infection (OR: = 2.36, 95% CI: 1.19 to 4.65, P = 0.01) and any HIV infection (OR: = 2.50, 95% CI: 1.34 to 4.69, P = 0.004). CONCLUSIONS: Our results support a role of CD4 polymorphisms in HIV-2 infection, in agreement with recent data showing that CD4 gene variants increase risk to HIV-1 in Kenyan female sex workers. These findings indicate at least some commonality in HIV-1 and HIV-2 susceptibility

Thank You to Our 2018 Peer Reviewers

AbstractThe editorial and scientific publishing process relies on the sustained work of volunteer reviewers, and evaluating the inter‐disciplinary and broad interest papers published in Geochemistry, Geophysics, Geosystems can be a particular challenge. As editors and associated editors, we are therefore hugely appreciative of the efforts of our reviewers, and would like to thank and acknowledge them in this editorial. G‐Cubed published 271 manuscripts in 2018, and for this we were able to rely on the efforts of 873 dedicated reviewers. A big thank you from the G‐Cubed team

Saving our marine archives

A concerted effort has begun to gather and preserve archives of marine samples and descriptive data, giving scientists ready access to insights on ancient environments

Refining trace metal temperature proxies in cold-water scleractinian and stylasterid corals

The Li/Mg, Sr/Ca and oxygen isotopic (O) compositions of many marine biogenic carbonates are sensitive to seawater temperature. Corals, as cosmopolitan marine taxa with carbonate skeletons that can be precisely dated, represent ideal hosts for these geochemical proxies. However, efforts to calibrate and refine temperature proxies in cold-water corals (<20 °C) remain limited. Here we present skeletal Li/Mg, Sr/Ca, O and carbon isotope (C) data from live-collected specimens of aragonitic scleractinian corals (Balanophyllia, Caryophyllia, Desmophyllum, Enallopsammia, Flabellum, Lophelia, and Vaughanella), both aragonitic and high-Mg calcitic stylasterid genera (Stylaster and Errina), and shallow-water high-Mg calcite crustose coralline algae (Lithophyllum, Hydrolithon, and Neogoniolithon). We interpret these data in conjunction with results from previously explored taxa including aragonitic zooxanthellate scleractinia and foraminifera, and high-Mg calcite octocorals. We show that Li/Mg ratios covary most strongly with seawater temperature, both for aragonitic and high-Mg calcitic taxa, making for reliable and universal seawater temperature proxies. Combining all of our biogenic aragonitic Li/Mg data with previous calibration efforts we report a refined relationship to temperature: Li/MgAll Aragonite = (). This calibration now permits paleo-temperature reconstruction to better than ±3.4 °C (95% prediction intervals) across biogenic aragonites, regardless of taxon, from 0 to 30 °C. For taxa in this study, aragonitic stylasterid Li/Mg offers the most robust temperature proxy (Li/MgStylasterid (Arag) = ()) with a reproducibility of ±2.3 °C. For the first time, we show that high-Mg calcites have a similar exponential relationship with temperature, but with a lower intercept value (Li/Mg = ()). This calibration opens the possibility of temperature reconstruction using high-Mg calcite corals and coralline algae. The commonality in the relationship between Li/Mg and temperature transcends phylogeny and suggests abiogenic trace metal incorporation mechanism

Developing a Road Map to Spread Genomic Knowledge in Africa: 10th Conference of the African Society of Human Genetics, Cairo, Egypt

The tenth conference of the African Society of Human Genetics was held in Egypt with the theme “Human Genetics and Genomics in Africa: Challenges for Both Rare and Common Genetic Disorders.” Current research was presented, and we discussed visions for the future of genomic research on the African continent. In this report, we summarize the presented scientific research within and relevant to Africa as presented by both African and non-African scientists. We also discuss the current situation concerning genomic medicine and genomic research within the continent, difficulties in implementing genetic services and genomic medicine in Africa, and a road map to overcome those difficulties and meet the needs of the African researchers and patients