Influence of Raman scattering on ocean color inversion models

Raman scattering can be a significant contributor to the emergent radiance spectrum from the surface ocean. Here, we present an analytical approach to directly estimate the Raman contribution to remote sensing reflectance, and evaluate its effects on optical properties estimated from two common semi analytical inversion models. For application of the method to ocean color remote sensing, spectral irradiance products in the ultraviolet from the OMI instrument are merged with MODerate-resolution Imaging Spectroradiometer (MODIS) data in the visible. The resulting global fields of Raman-corrected optical properties show significant differences from standard retrievals, particularly for the particulate backscattering coefficient, bbp, where average errors in clear ocean waters are ∼50%. Given the interest in transforming bbp into biogeochemical quantities, Raman scattering must be accounted for in semi analytical inversion schemes

Influence of Raman scattering on ocean color inversion models

Raman scattering can be a significant contributor to the emergent radiance spectrum from the surface ocean. Here, we present an analytical approach to directly estimate the Raman contribution to remote sensing reflectance, and evaluate its effects on optical properties estimated from two common semi analytical inversion models. For application of the method to ocean color remote sensing, spectral irradiance products in the ultraviolet from the OMI instrument are merged with MODerate-resolution Imaging Spectroradiometer (MODIS) data in the visible. The resulting global fields of Raman-corrected optical properties show significant differences from standard retrievals, particularly for the particulate backscattering coefficient, b(bp), where average errors in clear ocean waters are similar to 50%. Given the interest in transforming b(bp) into biogeochemical quantities, Raman scattering must be accounted for in semi analytical inversion schemes. (C) 2013 Optical Society of AmericaKeywords: Natural waters, Diffuse attenuation coefficient, Light fields, Irradiance, Inherent optical properties, Water leaving radiance, Pure water, Reflectance, Inelastic scattering, In-situ measurementsThis paper was published in Applied Optics and is made available as an electronic reprint with the permission of OSA. The paper can be found at the following URL on the OSA website: http://www.opticsinfobase.org/ao/search2.cfm?reissue=J&journalList=9&fullrecord=influence+of+raman&basicsearch=Go. Systematic or multiple reproduction or distribution to multiple locations via electronic or other means is prohibited and is subject to penalties under law

Validation of the particle size distribution obtained with the laser in-situ scattering and transmission (LISST) meter in flow-through mode

High spatial and temporal resolution estimates of the particle size distribution (PSD) in the surface ocean can enable improved understanding of biogeochemistry and ecosystem dynamics. Oceanic PSD measurements remain rare due to the time-consuming, manual sampling methods of common particle sizing instruments. Here, we evaluate the utility of measuring particle size data at high spatial resolution with a commercially-available submersible laser di raction particle sizer (LISST-100X, Sequoia Scientific), operating in an automated mode with continuously flowing seawater. The LISST PSD agreed reasonably well with discrete PSD measurements obtained with a Coulter Counter and data from the flow-through sampling Imaging Flow-Cytobot, validating our methodology. Total particulate area and Volume derived from the LISST PSD agreed well with beam-attenuation and particulate organic carbon respectively, further validating the LISST PSD. Furthermore, When compared to the measured spectral characteristics of particulate beam attenuation, we find a significant correlation. However, no significant relationship between the PSD and spectral particulate backscattering was found

Improbability mapping: a metric for satellite-detection of submarine volcanic eruptions

Submarine volcanic eruptions can result in both real and apparent changes in marine algal communities, e.g., increases in phytoplankton biomass and/or growth rates that can cover thousands of square kilometers. Satellite ocean color monitoring detects these changes as increases in chlorophyll and particulate backscattering. Detailed, high resolution analysis is needed to separate the optical effects of volcanic products from the response of the marine algal community. It is possible to calculate an index, which maps the magnitude of improbable change (relative to long term average conditions) following known volcanic eruptions by using low resolution, initial estimates of chlorophyll and backscatter along with an archived history of satellite data. We apply multivariate probability analysis to changes in global satellite ocean chlorophyll and particulate backscatter data to create a new metric for observing apparent biological responses to submarine eruptions. Several examples are shown, illustrating the sensitivity of our improbability mapping index to known submarine volcanic events, yielding a potentially robust method for the detection of new events in remote locations.Keywords: Improbability mapping index, Submarine volcanic eruptions, Satellite detectio

Photoacclimation of natural phytoplankton communities

ABSTRACT: Phytoplankton regulate internal pigment concentrations in response to light and nutrient availability. Chlorophyll a to phytoplankton carbon ratios (chl:C phyto) are commonly reported as a function of growth irradiance (Eg) for evaluating the photoacclimation response of phytoplankton. In contrast to most culture experiments, natural phytoplankton communities experience fluctuating environmental conditions, making it difficult to compare field and lab observations. Observing and understanding photoacclimation in nature is important for deciphering changes in chl:C phyto resulting from environmental forcings and for accurately estimating net primary production (NPP) in models which rely on a parameterized description of photoacclimation. Here we employ direct analytical measurements of C phyto and parallel high-resolution biomass estimates from particulate backscattering (bbp) and flow cytometry to investigate chl:C phyto in natural phytoplankton communities. Chl:C phyto observed over a wide range of Eg in the field was consistent with photoacclimation responses inferred from satellite observations. Field-based photoacclimation observations for a mixed natural community contrast with laboratory results for single species grown in continuous light and nutrient-replete conditions. Applying a carbon-based NPP model to our field data for a north-south transect in the Atlantic Ocean results in estimates that closely match 14C depth-integrated NPP for the same cruise and with historical records for the distinct biogeographic regions of the Atlantic Ocean. Our results are consistent with previous satellite and model observations of cells growing in natural or fluctuating light and showcase how direct measurements of Cphyto can be applied to explore phytoplankton photophysiology, growth rates, and production at high spatial resolution in situ.KEY WORDS: Phytoplankton carbon · Chlorophyll · Growth irradiance · Photoacclimation · Growth rate · Primary production · Nutrient

Annual cycles of phytoplankton biomass in the subarctic Atlantic and Pacific Ocean

High-latitude phytoplankton blooms support productive fisheries and play an important role in oceanic uptake of atmospheric carbon dioxide. In the subarctic North Atlantic Ocean, blooms are a recurrent feature each year, while in the eastern subarctic Pacific only small changes in chlorophyll (Chl) are seen over the annual cycle. Here we show that when evaluated using phytoplankton carbon biomass (C[subscript]phyto) rather than Chl, an annual bloom in the North Pacific is evident and can even rival blooms observed in the North Atlantic. The annual increase in subarctic Pacific phytoplankton biomass is not readily observed in the Chl record because it is paralleled by light- and nutrient-driven decreases in cellular pigment levels (C[subscript]phyto:Chl). Specifically, photoacclimation and iron stress effects on C[subscript]phyto:Chl oppose the biomass increase, leading to only modest changes in bulk Chl. The magnitude of the photoacclimation effect is quantified using descriptors of the near-surface light environment and a photophysiological model. Iron stress effects are diagnosed from satellite chlorophyll fluorescence data. Lastly, we show that biomass accumulation in the Pacific is slower than that in the Atlantic but is closely tied to similar levels of seasonal nutrient uptake in both basins. Annual cycles of satellite-derived Chl and C[subscript]phyto are reproduced by in situ autonomous profiling floats. These results contradict the long-standing paradigm that environmental conditions prevent phytoplankton accumulation in the subarctic Northeast Pacific and suggest a greater seasonal decoupling between phytoplankton growth and losses than traditionally implied. Further, our results highlight the role of physiological processes in shaping bulk properties, such as Chl, and their interpretation in studies of ocean ecosystem dynamics and climate change.Keywords: remote sensing, phytoplanktonKeywords: remote sensing, phytoplankto

Long-term evolution of the coupled boundary layers (STRATUS) mooring recovery and deployment cruise report NOAA Research Vessel R H Brown • cruise RB-01-08 9 October - 25 October 2001

This report documents the work done on cruise RB-01-08 of the NOAA R/V Ron Brown. This was Leg 2 of R/V Ron Brown’s participation in Eastern Pacific Investigation of Climate (EPIC) 2001, a study of air-sea interaction, the atmosphere, and the upper ocean in the eastern tropical Pacific. The science party included groups from the Woods Hole Oceanographic Institution (WHOI), NOAA Environmental Technology Laboratory (ETL), the University of Washington (UW), the University of California, Santa Barbara (UCSB), and the University Nacional Autonoma de Mexico (UNAM). The work done by these groups is summarized in this report. In addition, the routine underway data collected while aboard R/V Ron Brown is also summarized here.Funding was provided by the National Oceanic and Atmospheric Administration under Grant Numbers NA96GPO429 and NA17RJ1223

Small phytoplankton dominate western North Atlantic biomass

The North Atlantic phytoplankton spring bloom is the pinnacle in an annual cycle that is driven by physical, chemical, and biological seasonality. Despite its important contributions to the global carbon cycle, transitions in plankton community composition between the winter and spring have been scarcely examined in the North Atlantic. Phytoplankton composition in early winter was compared with latitudinal transects that captured the subsequent spring bloom climax. Amplicon sequence variants (ASVs), imaging flow cytometry, and flow-cytometry provided a synoptic view of phytoplankton diversity. Phytoplankton communities were not uniform across the sites studied, but rather mapped with apparent fidelity onto subpolar- and subtropical-influenced water masses of the North Atlantic. At most stations, cells < 20-µm diameter were the main contributors to phytoplankton biomass. Winter phytoplankton communities were dominated by cyanobacteria and pico-phytoeukaryotes. These transitioned to more diverse and dynamic spring communities in which pico- and nano-phytoeukaryotes, including many prasinophyte algae, dominated. Diatoms, which are often assumed to be the dominant phytoplankton in blooms, were contributors but not the major component of biomass. We show that diverse, small phytoplankton taxa are unexpectedly common in the western North Atlantic and that regional influences play a large role in modulating community transitions during the seasonal progression of blooms

Satellite-detected fluorescence reveals global physiology of ocean phytoplankton

© 2009 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 License. The definitive version was published in Biogeosciences 6 (2009): 779-794, doi: 10.5194/bg-6-779-2009Phytoplankton photosynthesis links global ocean biology and climate-driven fluctuations in the physical environment. These interactions are largely expressed through changes in phytoplankton physiology, but physiological status has proven extremely challenging to characterize globally. Phytoplankton fluorescence does provide a rich source of physiological information long exploited in laboratory and field studies, and is now observed from space. Here we evaluate the physiological underpinnings of global variations in satellite-based phytoplankton chlorophyll fluorescence. The three dominant factors influencing fluorescence distributions are chlorophyll concentration, pigment packaging effects on light absorption, and light-dependent energy-quenching processes. After accounting for these three factors, resultant global distributions of quenching-corrected fluorescence quantum yields reveal a striking consistency with anticipated patterns of iron availability. High fluorescence quantum yields are typically found in low iron waters, while low quantum yields dominate regions where other environmental factors are most limiting to phytoplankton growth. Specific properties of photosynthetic membranes are discussed that provide a mechanistic view linking iron stress to satellite-detected fluorescence. Our results present satellite-based fluorescence as a valuable tool for evaluating nutrient stress predictions in ocean ecosystem models and give the first synoptic observational evidence that iron plays an important role in seasonal phytoplankton dynamics of the Indian Ocean. Satellite fluorescence may also provide a path for monitoring climate-phytoplankton physiology interactions and improving descriptions of phytoplankton light use efficiencies in ocean productivity models.This work was supported by grants from the NASA Ocean Biology and Biogeochemistry Program and the NSF Biological Oceanography Program

Analytical phytoplankton carbon measurements spanning diverse ecosystems

The measurement of phytoplankton carbon (C[subscript]phyto) in the field has been a long-sought but elusive goal in oceanography. Proxy measurements of C[subscript]phyto have been employed in the past, but are subject to many confounding influences that undermine their accuracy. Here we report the first directly measured C[subscript]phyto values from the open ocean. The C[subscript]phyto samples were collected from a diversity of environments, ranging from Pacific and Atlantic oligotrophic gyres to equatorial upwelling systems to temperate spring conditions. When compared to earlier proxies, direct measurements of C[subscript]phyto exhibit the strongest relationship with particulate backscattering coefficients (b[subscript]bp) (R²=0.69). Chlorophyll concentration and total particulate organic carbon (POC) concentration accounted for ~ 20% less variability in C[subscript]phyto than b[subscript]bp. Ratios of C[subscript]phyto to Chl a span an order of magnitude moving across and within distinct ecosystems. Similarly, C[subscript]phyto:POC ratios were variable with the lowest values coming from productive temperate waters and the highest from oligotrophic gyres. A strong relationship between C[subscript]phyto and b[subscript]bp is particularly significant because b[subscript]bp is a property retrievable from satellite ocean color measurements. Our results, therefore, are highly encouraging for the global monitoring of phytoplankton biomass from space. The continued application of our C[subscript]phyto measurement approach will enable validation of satellite retrievals and contribute to an improved understanding of environmental controls on phytoplankton biomass and physiology