202 research outputs found

    Quantifying N response and N use efficiency in Rice-Wheat (RW) cropping systems under different water management

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    About 0·10 of the food supply in China is produced in rice¿wheat (RW) cropping systems. In recent decades, nitrogen (N) input associated with intensification has increased much more rapidly than N use in these systems. The resulting nitrogen surplus increases the risk of environmental pollution as well as production costs. Limited information on N dynamics in RW systems in relation to water management hampers development of management practices leading to more efficient use of nitrogen and water. The present work studied the effects of N and water management on yields of rice and wheat, and nitrogen use efficiencies (NUEs) in RW systems. A RW field experiment with nitrogen rates from 0 to 300 kg N/ha with continuously flooded and intermittently irrigated rice crops was carried out at the Jiangpu experimental station of Nanjing Agricultural University of China from 2002 to 2004 to identify improved nitrogen management practices in terms of land productivity and NUE. Nitrogen uptake by rice and wheat increased with increasing N rates, while agronomic NUE (kg grain/kg N applied) declined at rates exceeding 150 kg N/ha. The highest combined grain yields of rice and wheat were obtained at 150 and 300 kg N/ha per season in rice and wheat, respectively. Carry-over of residual N from rice to the subsequent wheat crop was limited, consistent with low soil nitrate after rice harvest. Total soil N hardly changed during the experiment, while soil nitrate was much lower after wheat than after rice harvest. Water management did not affect yield and N uptake by rice, but apparent N recovery was higher under intermittent irrigation (II). In one season, II management in rice resulted in higher yield and N uptake in the subsequent wheat season. Uptake of indigenous soil N was much higher in rice than in wheat, while in rice it was much higher than values reported in the literature, which may have consequences for nitrogen fertilizer recommendations based on indigenous N suppl

    Construction of a polarization insensitive lens from a quasi-isotropic metamaterial slab

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    We propose to employ the quasiisotropic metamaterial (QIMM) slab to construct a polarization insensitive lens, in which both E- and H-polarized waves exhibit the same refocusing effect. For shallow incident angles, the QIMM slab will provide some degree of refocusing in the same manner as an isotropic negative index material. The refocusing effect allows us to introduce the ideas of paraxial beam focusing and phase compensation by the QIMM slab. On the basis of angular spectrum representation, a formalism describing paraxial beams propagating through a QIMM slab is presented. Because of the negative phase velocity in the QIMM slab, the inverse Gouy phase shift and the negative Rayleigh length of paraxial Gaussian beam are proposed. We find that the phase difference caused by the Gouy phase shift in vacuum can be compensated by that caused by the inverse Gouy phase shift in the QIMM slab. If certain matching conditions are satisfied, the intensity and phase distributions at object plane can be completely reconstructed at image plane. Our simulation results show that the superlensing effect with subwavelength image resolution could be achieved in the form of a QIMM slab.Comment: 25 pages, 8 figure

    Superluminal group velocity in an anisotropic metamaterial

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    Based on boundary condition and dispersion relation, the superluminal group velocity in an anisotropic metamaterial (AMM) is investigated. The superluminal propagation is induced by the hyperbolic dispersion relation associated with the AMM. It is shown that a modulated Gaussian beam exhibits a superluminal group velocity which depends on the choice of incident angles and optical axis angles. The superluminal propagation does not violate the theory of special relativity because the group velocity is the velocity of the peak of the localized wave packet which does not carry information. It is proposed that a triglycine sulfate (TGS) crystal can be designed and the superluminal group velocity can be measured experimentally.Comment: 9 pages, 3 figure

    Identification of rifampin-regulated functional modules and related microRNAs in human hepatocytes based on the protein interaction network

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    BACKGROUND: In combination with gene expression profiles, the protein interaction network (PIN) constructs a dynamic network that includes multiple functional modules. Previous studies have demonstrated that rifampin can influence drug metabolism by regulating drug-metabolizing enzymes, transporters, and microRNAs (miRNAs). Rifampin induces gene expression, at least in part, by activating the pregnane X receptor (PXR), which induces gene expression; however, the impact of rifampin on global gene regulation has not been examined under the molecular network frameworks. METHODS: In this study, we extracted rifampin-induced significant differentially expressed genes (SDG) based on the gene expression profile. By integrating the SDG and human protein interaction network (HPIN), we constructed the rifampin-regulated protein interaction network (RrPIN). Based on gene expression measurements, we extracted a subnetwork that showed enriched changes in molecular activity. Using the Kyoto Encyclopedia of Genes and Genomes (KEGG), we identified the crucial rifampin-regulated biological pathways and associated genes. In addition, genes targeted by miRNAs that were significantly differentially expressed in the miRNA expression profile were extracted based on the miRNA-gene prediction tools. The miRNA-regulated PIN was further constructed using associated genes and miRNAs. For each miRNA, we further evaluated the potential impact by the gene interaction network using pathway analysis. RESULTS AND DISCCUSSION: We extracted the functional modules, which included 84 genes and 89 interactions, from the RrPIN, and identified 19 key rifampin-response genes that are associated with seven function pathways that include drug response and metabolism, and cancer pathways; many of the pathways were supported by previous studies. In addition, we identified that a set of 6 genes (CAV1, CREBBP, SMAD3, TRAF2, KBKG, and THBS1) functioning as gene hubs in the subnetworks that are regulated by rifampin. It is also suggested that 12 differentially expressed miRNAs were associated with 6 biological pathways. CONCLUSIONS: Our results suggest that rifampin contributes to changes in the expression of genes by regulating key molecules in the protein interaction networks. This study offers valuable insights into rifampin-induced biological mechanisms at the level of miRNAs, genes and proteins

    Parametrization of nonlinear and chaotic oscillations in driven beam-plasma diodes

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    Nonlinear phenomena in a driven plasma diode are studied using a fluid code and the particle-in-cell simulation code XPDPI. When a uniform electron beam is injected to a bounded diode filled with uniform ion background, the beam is destabilized by the Pierce instability and a perturbation grows to exhibit nonlinear oscillations including chaos. Two standard routes to chaos, period doubling and quasiperiodicity, are observed. Mode lockings of various winding numbers are observed in an ac driven system. A new diagnostic quantity is used to parametrize various nonlinear oscillations.open10

    Non-catalytic Roles for XPG with BRCA1 and BRCA2 in Homologous Recombination and Genome Stability

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    XPG is a structure-specific endonuclease required for nucleotide excision repair, and incision-defective Xpg mutations cause the skin cancer-prone syndrome xeroderma pigmentosum. Truncating mutations instead cause the neurodevelopmental progeroid disorder Cockayne syndrome, but little is known about how XPG loss results in this devastating disease. We identify XPG as a partner of BRCA1 and BRCA2 in maintaining genomic stability through homologous recombination (HRR). XPG depletion causes DNA double-strand breaks, chromosomal abnormalities, cell-cycle delays, defective HRR, inability to overcome replication fork stalling, and replication stress. XPG directly interacts with BRCA2, RAD51, and PALB2, and XPG depletion reduces their chromatin binding and subsequent RAD51 foci formation. Upstream in HRR, XPG interacts directly with BRCA1. Its depletion causes BRCA1 hyper-phosphorylation and persistent chromatin binding. These unexpected findings establish XPG as an HRR protein with important roles in genome stability and suggest how XPG defects produce severe clinical consequences including cancer and accelerated aging

    Pentavalent Sialic Acid Conjugates Block Coxsackievirus A24 Variant and Human Adenovirus Type 37–Viruses That Cause Highly Contagious Eye Infections

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    Coxsackievirus A24 variant (CVA24v) and human adenovirus 37 (HAdV-37) are leading causative agents of the severe and highly contagious ocular infections acute hemorrhagic conjunctivitis and epidemic keratoconjunctivitis, respectively. Currently, neither vaccines nor antiviral agents are available for treating these diseases, which affect millions of individuals worldwide. CVA24v and HAdV-37 utilize sialic acid as attachment receptors facilitating entry into host cells. Previously, we and others have shown that derivatives based on sialic acid are effective in preventing HAdV-37 binding and infection of cells. Here, we designed and synthesized novel pentavalent sialic acid conjugates and studied their inhibitory effect against CVA24v and HAdV-37 binding and infection of human corneal epithelial cells. The pentavalent conjugates are the first reported inhibitors of CVA24v infection and proved efficient in blocking HAdV-37 binding. Taken together, the pentavalent conjugates presented here form a basis for the development of general inhibitors of these highly contagious ocular pathogens
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