Managing Dynamic User Communities in a Grid of Autonomous Resources

One of the fundamental concepts in Grid computing is the creation of Virtual Organizations (VO's): a set of resource consumers and providers that join forces to solve a common problem. Typical examples of Virtual Organizations include collaborations formed around the Large Hadron Collider (LHC) experiments. To date, Grid computing has been applied on a relatively small scale, linking dozens of users to a dozen resources, and management of these VO's was a largely manual operation. With the advance of large collaboration, linking more than 10000 users with a 1000 sites in 150 counties, a comprehensive, automated management system is required. It should be simple enough not to deter users, while at the same time ensuring local site autonomy. The VO Management Service (VOMS), developed by the EU DataGrid and DataTAG projects[1, 2], is a secured system for managing authorization for users and resources in virtual organizations. It extends the existing Grid Security Infrastructure[3] architecture with embedded VO affiliation assertions that can be independently verified by all VO members and resource providers. Within the EU DataGrid project, Grid services for job submission, file- and database access are being equipped with fine- grained authorization systems that take VO membership into account. These also give resource owners the ability to ensure site security and enforce local access policies. This paper will describe the EU DataGrid security architecture, the VO membership service and the local site enforcement mechanisms Local Centre Authorization Service (LCAS), Local Credential Mapping Service(LCMAPS) and the Java Trust and Authorization Manager.Comment: Talk from the 2003 Computing in High Energy and Nuclear Physics (CHEP03), La Jolla, Ca, USA, March 2003, 7 pages, LaTeX, 5 eps figures. PSN TUBT00

Additional Thoughts on Rigor in Wildlife Science: Unappreciated Impediments

Traditionally, most scientists accepted reductionist and mechanistic approaches as the rigorous way to do science. Sells et al. (2018) recently raised the argument about reliability in wildlife science. Chamberlin (1890), Platt (1964), Romesburg (1981, 1991, 2009), and Williams (1997) were rightly referenced as very influential papers. My intention in this letter is not to refute the essence of the Sells et al. (2018) commentary but to add seldom addressed but important aspects that influence the attainment of rigor and certainty in wildlife studies. The elements of a rigorous approach (i.e., strong inference) as described by Platt (1964) included devising alternative hypotheses, devising ≥1 crucial experiments that will exclude ≥1 of the hypotheses, and carrying out the experiment to get a clean result. The process was then repeated using logical inductive trees (i.e., a continually bifurcated statement hypotheses approach) to obtain the essential cause for the effect. Platt (1964) agreed with Popper (1959) that science advanced only by disproof. He argued that this was a hard doctrine and leads to disputations between scientists, but that Chamberlin\u27s (1890) method of multiple working hypotheses helped to remove that difficulty. Platt (1964) emphasized inductive inference and crucial and critical experiments whereby alternate hypotheses are refuted. Romesburg (1981) explained that in wildlife biology, induction (reliable associations) and retroduction (developing hypotheses) were the basis for almost all wildlife research but were not sufficient. He proposed the hypothetical‐deductive (H‐D) method as a more reliable approach. Citing Harvey (1969), and Popper (1962), Romesburg (1981:294) explained that “Starting with the research hypothesis, usually obtained by retroduction, predictions are made about other classes of facts that should be true if the research hypothesis is actually true.” The hypothesis is then tested indirectly by using logic to deduce one or more test consequences (Romesburg 2014). Data are then collected in a statistical framework. Romesburg (1981) distinguished between a research hypothesis (i.e., a conjecture about some process) versus a statistical hypothesis (i.e., a conjecture about classes of facts encompassed by the process). Williams (1997) clearly explained the differences between necessary and sufficient causation and gave examples of the coherent logic both entailed. He summarized that the science endeavor included theory, hypotheses, predictions, observations, and comparison of predictions against data, and argued that inductive and deductive logic were required for testing hypotheses. Importantly, Williams (1997:1014) recognized that wildlife biology often involves simultaneous complementary explanatory factors, requiring “the framing of many scientifically interesting issues about cause and effect in terms of the relative contribution of multiple causal factors.” Over the years, many others have addressed the issue of rigor and reliability in the Journal of Wildlife Management (JWM) and the Wildlife Society Bulletin (WSB) either directly (McNab 1983, Eberhardt 1988, Anderson 2001) or indirectly (Steidl et al. 1997, Guthery et al. 2001). This is not a complete list and is limited primarily to JWM and WSB but gives an idea of the wide interest in achieving reliable results from wildlife studies

Dirty Bomb Fallout

At present, there is a significant need to develop decontamination agents that can be used effectively after detonation of a radiological dispersal device (RDD) in an urban environment. There is also a need for the development of reproducible test surfaces to be used to determine the efficacy of the agent being developed. Researchers at Lawrence Livermore National Laboratory (LLNL), under the auspices of the US Department of Energy (DoE), conducted a field study to evaluate the deposition of an explosively dispersed radionuclide surrogate (CsCl) on grime-bearing and non-grime-bearing urban surfaces. The goal was to investigate the preparation and contamination of urban surfaces that closely mimic what one would expect to encounter following the detonation of an RDD. Migration of Cs into concrete surfaces was investigated in detail. Many non-proliferation, security and response organizations that have modeled RDD scenarios use cesium-137, as well as cobalt-60, strontium-90, americium-241 as the most likely RDD agents. Cesium-137 is an isotope of concern for possible use in an RDD due to its potential availability resulting from its widespread legitimate use in construction, geotechnical and medical industrial devices. In some Cs-containing instruments the Cesium-137 is present as the highly dispersible and water soluble salt, cesium chloride (CsCl). In this form Cs is able to rapidly disperse in the environment, as witnessed in the 1987 Goiania accident in Brazil, when inadvertent dispersal of a radiotherapy source resulted in fatalities and injuries

Programmed death ligand 1 is over-expressed by neutrophils in the blood of patients with active tuberculosis

Tuberculosis (TB), caused by Mycobacterium tuberculosis (Mtb), remains one of the world's largest infectious disease problems. Despite decades of intensive study, the immune response to Mtb is incompletely characterised, reflecting the extremely complex interaction between pathogen and host. Pathways that may alter the balance between host protection and pathogenesis are therefore of great interest. One pathway shown to play a role in the pathogenesis of chronic infections, including TB, is the programmed death-1 (PD-1) pathway. We show here that the expression of the programmed death ligand 1 (PD-L1), which interacts with PD-1, is increased in whole blood from active TB patients compared with whole blood from healthy controls or Mtb-exposed individuals, and that expression by neutrophils is largely responsible for this increase

Field Evaluation of the Explosive Deposition of Cesium on Concrete Surfaces Following the Detonation of a Mock Radiological Dispersal Device (RDD)

Researchers at Lawrence Livermore National Laboratory conducted a field study to evaluate the deposition of an explosively dispersed radionuclide surrogate (CsCl) on grime and non-grime containing urban surfaces. An additional objective of this study was to evaluate several laboratory surface contamination techniques for the preparation of mock urban surfaces in order to determine the method that most closely mimics surface contamination following an RDD event. The field study was conducted at the LLNL Site 300 Contained Firing Facility (CFF). For our study, we detonated a mock RDD made using C4 and non-radioactive CsCl. Lab prepared concrete samples (3.8 cm x 7.6 cm cylinders) were made using 4 different conditioning regimes to mimic a range of conditions that may be encountered during an RDD event. This sample set included dry, wet, carbonated and non-carbonated cores with and without the application of urban grime. In addition, concreted samples (13 cm x 13 cm x 5 cm) removed from an urban surface were placed inside the CFF chamber. The samples were placed inside the firing chamber at 3 different distances from the mock RDD device. Following the detonation of the mock RDD, the samples were removed from the firing chamber and selected cores were characterized by laser ablation and scanning electron microscopy. Preliminary results suggest that Cs migrates into the concrete samples and the presence of a grime layer does not appear to impede this migration

Thermoregulation and heterothermy in some of the smaller flying foxes (Megachiroptera) of New Guinea

Body temperature, heterothermy, oxygen consumption, heart rate, and evaporative water loss were studied in four species of flying foxes (Megachiroptera), Dobsonia minor, Nyctimene major, Nyctimene albiventer , and Paranyctimene raptor , from the vicinity of Madang on the north coast of New Guinea.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47105/1/359_2004_Article_BF00297716.pd

Local Chatter or International Buzz? Language Differences on Posts about Zika Research on Twitter and Facebook

Background When the Zika virus outbreak became a global health emergency in early 2016, the scientific community responded with an increased output of Zika-related research. This upsurge in research naturally made its way into academic journals along with editorials, news, and reports. However, it is not yet known how or whether these scholarly communications were distributed to the populations most affected by Zika. Methodology/Principal findings To understand how scientific outputs about Zika reached global and local audiences, we collected Tweets and Facebook posts that linked to Zika-related research in the first six months of 2016. Using a language detection algorithm, we found that up to 90% of Twitter and 76% of Facebook posts are in English. However, when none of the authors of the scholarly article are from English-speaking countries, posts on both social media are less likely to be in English. The effect is most pronounced on Facebook, where the likelihood of posting in English is between 11 and 16% lower when none of the authors are from English-speaking countries, as compared to when some or all are. Similarly, posts about papers written with a Brazilian author are 13% more likely to be in Portuguese on Facebook than when made on Twitter. Conclusions/Significance Our main conclusion is that scholarly communication on Twitter and Facebook of Zikarelated research is dominated by English, despite Brazil being the epicenter of the Zika epidemic. This result suggests that scholarly findings about the Zika virus are unlikely to be distributed directly to relevant populations through these popular online mediums. Nevertheless, there are differences between platforms. Compared to Twitter, scholarly communication on Facebook is more likely to be in the language of an author’s country. The Zika outbreak provides a useful case-study for understanding how scientific outputs are communicated to relevant populations. Our results suggest that Facebook is a more effective channel than Twitter, if communication is desired to be in the native language of the affected country. Further research should explore how local media—such as governmental websites, newspapers and magazines, as well as television and radio—disseminate scholarly publication

Hyperfine resolved spectrum of the molecular dication DCl

We have obtained hyperfine-resolved infrared spectra of a PQ23(N) branch line in the v = 2-1 band of the X 3Σ- state of the molecular dication D35Cl2+. Analysis of the hyperfine structure allows us to estimate the magnitude of the Fermi contact interaction for the chlorine nucleus; bF(Cl) = 167 (25) MHz

Observation of two new Ξb−\Xi_b^- baryon resonances

Two structures are observed close to the kinematic threshold in the $\Xi_b^0 \pi^-$ mass spectrum in a sample of proton-proton collision data, corresponding to an integrated luminosity of 3.0 fb$^{-1}$ recorded by the LHCb experiment. In the quark model, two baryonic resonances with quark content $bds$ are expected in this mass region: the spin-parity $J^P = \frac{1}{2}^+$ and $J^P=\frac{3}{2}^+$ states, denoted $\Xi_b^{\prime -}$ and $\Xi_b^{*-}$. Interpreting the structures as these resonances, we measure the mass differences and the width of the heavier state to be $m(\Xi_b^{\prime -}) - m(\Xi_b^0) - m(\pi^{-}) = 3.653 \pm 0.018 \pm 0.006$ MeV$/c^2$, $m(\Xi_b^{*-}) - m(\Xi_b^0) - m(\pi^{-}) = 23.96 \pm 0.12 \pm 0.06$ MeV$/c^2$, $\Gamma(\Xi_b^{*-}) = 1.65 \pm 0.31 \pm 0.10$ MeV, where the first and second uncertainties are statistical and systematic, respectively. The width of the lighter state is consistent with zero, and we place an upper limit of $\Gamma(\Xi_b^{\prime -}) < 0.08$ MeV at 95% confidence level. Relative production rates of these states are also reported.Comment: 17 pages, 2 figure

Human vascular adhesion proteın-1 (VAP-1): Serum levels for hepatocellular carcinoma in non-alcoholic and alcoholic fatty liver disease

<p>Abstract</p> <p>Background</p> <p>The incidence of hepatocellular cancer in complicated alcoholic and non-alcoholic fatty liver diseases is on the rise in western countries as well in our country. Vascular adhesion protein-1 (VAP-1) levels have been presented as new marker. In our study protocol, we assessed the value of this serum protein, as a newly postulant biomarker for hepatocellular cancer in patients with a history of alcoholic and non-alcoholic fatty liver diseases.</p> <p>Methods</p> <p>Pre-operative serum samples from 55 patients with hepatocellular cancer with a history of alcoholic and non-alcoholic fatty liver diseases and patients with cirrhosis were assessed by a quantitative sandwich ELISA using anti-VAP-1 mAbs. This technique is used to determine the levels of soluble VAP-1 (sVAP-1) in the serum.</p> <p>Results</p> <p>sVAP-1 levels were evaluated in patients with hepatocellular cancer and liver cirrhosis. There was a significant difference in mean VAP-1 levels between groups. Serum VAP-1 levels were found higher in patients with hepatocellular cancer.</p> <p>Conclusion</p> <p>These findings indicate that the serum level of sVAP-1 might be a beneficial marker of disease activity in chronic liver diseases.</p