Monte Carlo simulation of phase equilibria in Ising fluids and their mixtures

The mean field theory for the pure Ising fluid was recently extended to binary mixtures of an Ising and a van der Waals fluid. Depending on the relative interaction strengths, their three dimensional phase diagrams show lines of tricritical consolute and plait points, lines of critical end points and magnetic consolute point lines. Our current efforts are to compare these mean field results with different Monte Carlo simulation techniques, investigating both first order (liquid-vapor and demixing) and second order (paramagneticferromagnetic) phase transitions. We show the resulting ρ, T phase diagrams of the pure Ising fluid for different magnetic interaction strengths R and constant pressure cross-sections of the x, T, p phase diagrams of Ising mixtures for different relative interaction strengths. The methods we have used include Gibbs Ensemble MC, Multihistogram Reweighting, Hyper-parallel Tempering, the cumulant intersection method and the newly developed Density of States MC technique.Область застосування теорії середнього поля для чистого ізинґівського плину нещодавно поширилась на бінарні суміші ізинґівських і ван-дер-вальсівських плинів. Залежно від сил відносної взаємодії, їхня тривимірна фазова діаграма демонструє такі лінії: трикритичних точок розчинення і критичних точок рідина-пара, критичних кінцевих точок та точок розшарування у феромагнітній фазі. У даній роботі ми порівнюємо результати, отримані в наближенні середнього поля, з моделюванням різними методами Монте-Карло, досліджуючи фазові переходи і першого (рідина-пара або розшарування), і другого (парамагнетик-феромагнетик) роду. Нами побудовано результуючі фазові діаграми ρ, T для чистого ізинґівського плину при різних силах магнітної взаємодії R та перерізи фазових діаграм x, T, p при сталому тиску для ізинґівських сумішей при різних силах відносної взаємодії. Серед використаних нами методів є МК для ансамблю Гіббса, мультигістограмний перерозподіл, гіперпаралельне згладжування, метод кумулянтних перерізів і недавно створений метод МК для густини станів

XY Spin Fluid in an External Magnetic Field

A method of integral equations is developed to study inhomogeneous fluids with planar spins in an external field. As a result, the calculations for these systems appear to be no more difficult than those for ordinary homogeneous liquids. The approach proposed is applied to the ferromagnetic XY spin fluid in a magnetic field using a soft mean spherical closure and the Born-Green-Yvon equation. This provides an accurate reproduction of the complicated phase diagram behavior obtained by cumbersome Gibbs ensemble simulation and multiple histogram reweighting techniques.Comment: 4 pages, 3 figures, submitted to Phys. Rev. Let

Concentration and mass dependence of transport coefficients and correlation functions in binary mixtures with high mass-asymmetry

Correlation functions and transport coefficients of self-diffusion and shear viscosity of a binary Lennard-Jones mixture with components differing only in their particle mass are studied up to high values of the mass ratio $\mu$, including the limiting case $\mu=\infty$, for different mole fractions $x$. Within a large range of $x$ and $\mu$ the product of the diffusion coefficient of the heavy species $D_{2}$ and the total shear viscosity of the mixture $\eta_{m}$ is found to remain constant, obeying a generalized Stokes-Einstein relation. At high liquid density, large mass ratios lead to a pronounced cage effect that is observable in the mean square displacement, the velocity autocorrelation function and the van Hove correlation function

Phase diagrams of classical spin fluids: the influence of an external magnetic field on the liquid-gas transition

The influence of an external magnetic field on the liquid-gas phase transition in Ising, XY, and Heisenberg spin fluid models is studied using a modified mean field theory and Gibbs ensemble Monte Carlo simulations. It is demonstrated that the theory is able to reproduce quantitatively all characteristic features of the field dependence of the critical temperature T_c(H) for all the three models. These features include a monotonic decrease of T_c with rising H in the case of the Ising fluid as well as a more complicated nonmonotonic behavior for the XY and Heisenberg models. The nonmonotonicity consists in a decrease of T_c with increasing H at weak external fields, an increase of T_c with rising H in the strong field regime, and the existence of a minimum in T_c(H) at intermediate values of H. Analytical expressions for T_c(H) in the large field limit are presented as well. The magnetic para-ferro phase transition is also considered in simulations and described within the mean field theory.Comment: 14 pages, 12 figures (to be submitted to Phys. Rev. E

γ-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin

DNA double-strand breaks (DSBs) are extremely dangerous lesions with severe consequences for cell survival and the maintenance of genomic stability. In higher eukaryotic cells, DSBs in chromatin promptly initiate the phosphorylation of the histone H2A variant, H2AX, at Serine 139 to generate γ-H2AX. This phosphorylation event requires the activation of the phosphatidylinositol-3-OH-kinase-like family of protein kinases, DNA-PKcs, ATM, and ATR, and serves as a landing pad for the accumulation and retention of the central components of the signaling cascade initiated by DNA damage. Regions in chromatin with γ-H2AX are conveniently detected by immunofluorescence microscopy and serve as beacons of DSBs. This has allowed the development of an assay that has proved particularly useful in the molecular analysis of the processing of DSBs. Here, we first review the role of γ-H2AX in DNA damage response in the context of chromatin and discuss subsequently the use of this modification as a surrogate marker for mechanistic studies of DSB induction and processing. We conclude with a critical analysis of the strengths and weaknesses of the approach and present some interesting applications of the resulting methodology

Chemosensory Cues to Conspecific Emotional Stress Activate Amygdala in Humans

Alarm substances are airborne chemical signals, released by an individual into the environment, which communicate emotional stress between conspecifics. Here we tested whether humans, like other mammals, are able to detect emotional stress in others by chemosensory cues. Sweat samples collected from individuals undergoing an acute emotional stressor, with exercise as a control, were pooled and presented to a separate group of participants (blind to condition) during four experiments. In an fMRI experiment and its replication, we showed that scanned participants showed amygdala activation in response to samples obtained from donors undergoing an emotional, but not physical, stressor. An odor-discrimination experiment suggested the effect was primarily due to emotional, and not odor, differences between the two stimuli. A fourth experiment investigated behavioral effects, demonstrating that stress samples sharpened emotion-perception of ambiguous facial stimuli. Together, our findings suggest human chemosensory signaling of emotional stress, with neurobiological and behavioral effects

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field