Nanoparticle transport in saturated porous medium using magnetic resonance imaging

Transport study of nanoparticle (NP) through matrix flow dominated aquifer sand and soils have significant influence in natural systems. To quantify the transport behaviour, magnetic resonance imaging (MRI) was used to image the iron oxide based nanoparticle, Molday ION (carboxyl terminated) through saturated sandstone rock core. T2-weighted images were acquired and the changes in image intensity were calibrated to get a quantitative concentration profiles at various time intervals. These profiles were evaluated through CXTFIT transport model to estimate the transport parameters. These parameters are estimated at various points along the length of the column while classical breakthrough curve analysis cannot provide these details. NP–surface interactions were investigated using DLVO (Derjaguin–Landau–Verwey–Overbeek) theory. The dispersion coefficients (2.55–1.21 × 10−7 m2/s) were found to be decrease with distance, deposition rate constant k (6.70–9.13 × 10−4 (1/s)) and fast deposition rate constant kfast (4.32–8.79 × 10−2 (1/s)) were found to be increase with distance. These parameter variations over length will have a scaling up impact in developing transport models for environmental remediation and risk assessment schemes

Metagenomic sequencing unravels gene fragments with phylogenetic signatures of O2-tolerant NiFe membrane-bound hydrogenases in lacustrine sediment

Many promising hydrogen technologies utilising hydrogenase enzymes have been slowed by the fact that most hydrogenases are extremely sensitive to O2. Within the group 1 membrane-bound NiFe hydrogenase, naturally occurring tolerant enzymes do exist, and O2 tolerance has been largely attributed to changes in iron–sulphur clusters coordinated by different numbers of cysteine residues in the enzyme’s small subunit. Indeed, previous work has provided a robust phylogenetic signature of O2 tolerance [1], which when combined with new sequencing technologies makes bio prospecting in nature a far more viable endeavour. However, making sense of such a vast diversity is still challenging and could be simplified if known species with O2-tolerant enzymes were annotated with information on metabolism and natural environments. Here, we utilised a bioinformatics approach to compare O2-tolerant and sensitive membrane-bound NiFe hydrogenases from 177 bacterial species with fully sequenced genomes for differences in their taxonomy, O2 requirements, and natural environment. Following this, we interrogated a metagenome from lacustrine surface sediment for novel hydrogenases via high-throughput shotgun DNA sequencing using the Illumina™ MiSeq platform. We found 44 new NiFe group 1 membrane-bound hydrogenase sequence fragments, five of which segregated with the tolerant group on the phylogenetic tree of the enzyme’s small subunit, and four with the large subunit, indicating de novo O2-tolerant protein sequences that could help engineer more efficient hydrogenases

Ocean acidification impacts mussel control on biomineralisation

Ocean acidification is altering the oceanic carbonate saturation state and threatening the survival of marine calcifying organisms. Production of their calcium carbonate exoskeletons is dependent not only on the environmental seawater carbonate chemistry but also the ability to produce biominerals through proteins. We present shell growth and structural responses by the economically important marine calcifier Mytilus edulis to ocean acidification scenarios (380, 550, 750, 1000≈ atm pCO 2). After six months of incubation at 750≈ atm pCO 2, reduced carbonic anhydrase protein activity and shell growth occurs in M. edulis. Beyond that, at 1000≈ atm pCO 2, biomineralisation continued but with compensated metabolism of proteins and increased calcite growth. Mussel growth occurs at a cost to the structural integrity of the shell due to structural disorientation of calcite crystals. This loss of structural integrity could impact mussel shell strength and reduce protection from predators and changing environments

Examination of the ocean as a source for atmospheric microplastics

Global plastic litter pollution has been increasing alongside demand since plastic products gained commercial popularity in the 1930’s. Current plastic pollutant research has generally assumed that once plastics enter the ocean they are there to stay, retained permanently within the ocean currents, biota or sediment until eventual deposition on the sea floor or become washed up onto the beach. In contrast to this, we suggest it appears that some plastic particles could be leaving the sea and entering the atmosphere along with sea salt, bacteria, virus’ and algae. This occurs via the process of bubble burst ejection and wave action, for example from strong wind or sea state turbulence. In this manuscript we review evidence from the existing literature which is relevant to this theory and follow this with a pilot study which analyses microplastics (MP) in sea spray. Here we show first evidence of MP particles, analysed by μRaman, in marine boundary layer air samples on the French Atlantic coast during both onshore (average of 2.9MP/m3) and offshore (average of 9.6MP/m3) winds. Notably, during sampling, the convergence of sea breeze meant our samples were dominated by sea spray, increasing our capacity to sample MPs if they were released from the sea. Our results indicate a potential for MPs to be released from the marine environment into the atmosphere by sea-spray giving a globally extrapolated figure of 136000 ton/yr blowing on shore

Biomineral shell formation under ocean acidification: A shift from order to chaos

Biomineral production in marine organisms employs transient phases of amorphous calcium carbonate (ACC) in the construction of crystalline shells. Increasing seawater pCO2 leads to ocean acidification (OA) with a reduction in oceanic carbonate concentration which could have a negative impact on shell formation and therefore survival. We demonstrate significant changes in the hydrated and dehydrated forms of ACC in the aragonite and calcite layers of Mytilus edulis shells cultured under acidification conditions (1000 μatm pCO2) compared to present day conditions (380 μatm pCO2). In OA conditions, Mytilus edulis has more ACC at crystalisation sites. Here, we use the high-spatial resolution of synchrotron X-ray Photo Emission Electron Microscopy (XPEEM) combined with X-ray Absorption Spectroscopy (XAS) to investigate the influence of OA on the ACC formation in the shells of adult Mytilus edulis. Electron Backscatter Diffraction (EBSD) confirms that OA reduces crystallographic control of shell formation. The results demonstrate that OA induces more ACC formation and less crystallographic control in mussels suggesting that ACC is used as a repair mechanism to combat shell damage under OA. However, the resultant reduced crystallographic control in mussels raises concerns for shell protective function under predation and changing environments. © 2016, Nature Publishing Group. All rights reserved

Reduction of environmental impacts due to using permeable pavements to harvest stormwater

While rainwater harvesting can provide additional water resources, this approach is largely undertaken using water from roofs. More recently, the potential for using stormwater harvested from permeable pavements was recognised as a potential additional water resource. The objective of this study was to estimate the reduction of environmental impacts caused by traditional drainage systems and centralised water utilities if permeable pavement systems were used to harvest stormwater for nonpotable purposes in buildings. The lifecycle environmental impacts and costs associated with the proposed pavements and hydraulic systems were assessed. The city of Glasgow was chosen as a case study. We used the Netuno computer programme to estimate the potential for potable water savings considering the use of stormwater for nonpotable purposes and the SimaPro software to perform a lifecycle assessment (LCA). With the implementation of permeable pavements and stormwater utilisation, great reductions in lifecycle emissions (i.e., CO2-, SO2-, and PM2.5-equivalent emissions) were observed. The proposed system also proved to be economically feasible, i.e., a payback period equal to 16.9 years. The results show the economic and environmental feasibility of permeable pavements when used on a large scale, proving to be an important strategy to reduce water and environmental stresses caused by centralised water utilities and traditional drainage systems

The effect of displacement distribution asymmetry on the accuracy of phase-shift velocimetry in porous media

Phase-shift velocimetry provided by pulsed magnetic field gradient experiments is the fastest magnetic resonance technique for measuring velocity. However, critical issues have been reported when studying flow through porous media. These lead to inaccurate velocimetry results, with no clear explanation emerging. In this work we investigate the effect of asymmetries in the distribution of intra-voxel displacements on the accuracy of phase-shift velocimetry. This is particularly relevant to flow through porous media, where the presence of stagnant pores or differential flow is known to result in asymmetric displacement distributions. Here, tailored intra-voxel distributions are achieved using a simple phantom combined with a single large voxel. Combining experimental results with simulations, we demonstrate that the presence of asymmetries in the intra-voxel displacement distributions, common in studies of porous materials, can lead to important velocimetry errors

Microscale analysis of fractured rock sealed with microbially induced CaCO3 precipitation : influence on hydraulic and mechanical performance

Microbially induced CaCO3 precipitation (MICP) has shown great potential to reduce permeability in intact rocks as a means to seal fluid pathways in subsurface ground, for example to secure waste storage repositories. However, much less is known about how to apply MICP to seal fractured rock. Furthermore, there is limited information on the hydraulic and mechanical properties of MICP filled fractures, which are essential criteria to assess seal performance. Here, MICP injection strategies were tested on sandstone cores, aimed at obtaining a homogeneous porosity fill that reduced permeability by 3 orders of magnitude. The injection strategy resulting in the most homogenous calcite distribution was then applied to fractured granite cores, to yield transmissivity reduction of up to 4 orders of magnitude. Microscale analysis of these sealed granite cores using X‐ray computed tomography and electron microscopy showed that > 67% of the fracture aperture was filled with calcite, with crystals growing from both fracture planes, and bridging the fracture aperture in several places. Shear strength tests performed on these cores showed that the peak shear strength correlated well with the percentage of the fracture area where calcite bridged the aperture. Notably, brittle failure occurred within the MICP grout, showing that the calcite crystals were strongly attached to the granite surface. If MICP fracture sealing strategies can be designed such that the majority of CaCO3 crystals bridge across the fracture aperture, then MICP has the potential to provide significant mechanical stability to the rock mass as well as forming a hydraulic barrier

Transport of <i>Sporosarcina pasteurii</i> in sandstone and its significance for subsurface engineering technologies

The development of microbially mediated technologies for subsurface remediation and rock engineering is steadily increasing; however, we are lacking experimental data and models to predict bacterial movement through rock matrices. Here, breakthrough curves (BTCs) were obtained to quantify the transport of the ureolytic bacterium, Sporosarcina pasteurii, through sandstone cores, as a function of core length (1.8–7.5 cm), bacterial density (4 × 10&lt;sup&gt;6&lt;/sup&gt; to 9 × 10&lt;sup&gt;7&lt;/sup&gt; cells/ml) and flow rate (5.8–17.5 m/s). &lt;i&gt;S. pasteurii&lt;/i&gt; was easily immobilised within the homogeneous sandstone matrix (&gt;80%) in comparison to a packed sand column (&lt;20%; under similar experimental conditions), and percentage recovery decreased almost linearly with increasing rock core length. Moreover, a decrease in bacterial density or flow rate enhanced bacterial retention. A numerical model based on 1D advection dispersion models used for unconsolidated sand was fitted to the BTC data obtained here for sandstone. Good agreement between data and model was obtained at shorter rock core lengths (&lt;4 cm), suggesting that physicochemical filtration processes are similar in homogeneous packed sand and sandstones at these lengths. Discrepancies were, however observed at longer core lengths and with varying flow rates, indicating that the attributes of consolidated rock might impact bacterial transport progressively more with increasing core length. Implications of these results on microbial mineralisation technologies currently being developed for sealing fluid paths in subsurface environment is discussed

Optically trapped bacteria pairs reveal discrete motile response to control aggregation upon cell–cell approach

Aggregation of bacteria plays a key role in the formation of many biofilms. The critical first step is cell–cell approach, and yet the ability of bacteria to control the likelihood of aggregation during this primary phase is unknown. Here, we use optical tweezers to measure the force between isolated Bacillus subtilis cells during approach. As we move the bacteria towards each other, cell motility (bacterial swimming) initiates the generation of repulsive forces at bacterial separations of ~3 μm. Moreover, the motile response displays spatial sensitivity with greater cell–cell repulsion evident as inter-bacterial distances decrease. To examine the environmental influence on the inter-bacterial forces, we perform the experiment with bacteria suspended in Tryptic Soy Broth, NaCl solution and deionised water. Our experiments demonstrate that repulsive forces are strongest in systems that inhibit biofilm formation (Tryptic Soy Broth), while attractive forces are weak and rare, even in systems where biofilms develop (NaCl solution). These results reveal that bacteria are able to control the likelihood of aggregation during the approach phase through a discretely modulated motile response. Clearly, the force-generating motility we observe during approach promotes biofilm prevention, rather than biofilm formation