Genetic diversity on the tropical rare wood species of Dalbergia in Vietnam revealed by inter-simple sequence repeat (ISSR) markers

Genetic diversities of three rare hardwood species of Dalbergia (D. assamica, D. nigrescens and D. tonkinensis) were evaluated for conservation based on inter-simple sequence repeat (ISSR) markers. A total of 47 ISSR primers were used for the analysis, but only 31 ISSR primers were successfully amplified for 25 samples from each species. There were 166 fragments across the 75 samples produced, in which 153 were polymorphic with an average of 4.94 polymorphic fragments per primer. The number of amplified fragments ranged from 1 (ISSR13, ISSR54 and ISSR59) to 11 (ISSR14) and their size varied from 200 to 1700 bp. The similarity coefficient ranged from 67.0 to 98.9% in D. assamica; from 71.2 to 98.5% in D. nigrescens and from 68.5 to 95.2% in D. tonkinensis. The estimated value of molecular diversity parameters within species such as the effective number of alleles, Shannon's information index, intralocus gene diversity and Nei’s gene diversity were low among the individuals of the different Dalbergia species (1.227, 0.195, 0.662 and 0.146, respectively in D. assamica; 1.135, 0.111, 0.425 and 0.109, respectively in D. nigrescens; 1.198, 0.166, 0.526 and 0.123, respectively in D. tonkinensis). The analysis of molecular variance (AMOVA) of ISSR data indicated that the greater proportion of total genetic variation existed among species rather than within species. The correlation between genetic and geographic distance was also found in the three Dalbergia species.Key words: Dalbergia, endemic species, genetic similarity, ISSR markers

The proxy problem anatomized: child-parent disagreement in health related quality of life reports of chronically ill adolescents

<p>Abstract</p> <p>Background</p> <p>Discrepancy between self-reports and parent-proxy reports of adolescent health-related quality of life (HRQoL) has been repeatedly acknowledged in the literature as the proxy problem. However, little is known about the extent and direction of this discrepancy. The purpose of this study is to explore to what extent and in what direction HRQoL self-reports of adolescents with chronic conditions and those of their parents differ.</p> <p>Methods</p> <p>A cross-sectional survey was conducted among adolescents suffering from chronic conditions and their parents. Socio-demographic and disease-related characteristics were collected and information about consequences of the chronic condition was assessed. HRQoL was measured with KIDSCREEN-10 and DISABKIDS condition generic measure (DCGM-10). Agreement was analysed through defining a threshold of agreement based on half of the standard deviation of the HRQoL score with the highest variance. Agreement occurred if the difference between adolescent and parent scores was less than or equal to half of the standard deviation. Intra-class correlation coefficients and Bland-Altman plots were also computed. The characteristics associated with direction of disagreement were statistically tested with one-way ANOVA and Chi-square tests.</p> <p>Results</p> <p>584 paired HRQoL scores were obtained. Ratings from both adolescents and parents were high, compared to European norm data. Differences between adolescents and parents were statistically significant, yet relatively small. Disagreement existed in both directions: in 24.5% (KIDSCREEN-10) and 16.8% (DCGM-10) of the cases adolescents rated their HRQoL lower than did their parent, while in 32.2% (KIDSCREEN-10) and 31.7% (DCGM-10) of the cases the opposite was true. Adolescent's age, educational level and type of education, parent's educational level, number of hospital admissions and several other disease-related factors influenced direction of disagreement.</p> <p>Conclusions</p> <p>In a reasonable proportion of cases the adolescent and parent agreed on the adolescent's HRQoL (43-51% of the cases) and most disagreement tended to be minor. Thus, the proxy problem may be smaller than presented in the literature and its extent may differ per population. As adolescents are expected to become partners in their own health care, it is recommended to focus on adolescents' own perceptions of HRQoL.</p

Immune response to allergens in sheep sensitized to house dust mite

<p>Abstract</p> <p>Background</p> <p>House dust mite (HDM) allergens are a major cause of allergic asthma. Most studies using animal models of allergic asthma have used rodents sensitized with the 'un-natural' allergen ovalbumin. It has only recently been recognized that the use of animal models based on HDM provide a more relevant insight into the allergen-induced mechanisms that underpin human allergic disease. We have previously described a sheep model of human allergic asthma that uses <it>Dermatophagoides pteronyssinus </it>HDM. The present study extends our understanding of the immune effects of HDM and the allergens Der p 1 and Der p 2 in the sheep model of asthma.</p> <p>Methods</p> <p>Peripheral blood sera from non-sensitized (control) sheep and sheep sensitized to HDM was collected to determine immunoglobulin (Ig) reactivities to HDM, Der p 1 and Der p 2 by ELISA. Bronchoalveolar lavage (BAL) fluid collected following allergen challenge was also assessed for the presence of HDM-specific antibodies. To examine the cellular immune response to HDM allergens, T cell proliferation and cutaneous responses were assessed in sensitized and control sheep.</p> <p>Results</p> <p>Strong HDM- and Der p 1-specific IgE, IgG₁, IgG₂and IgA serum responses were observed in sensitized sheep, while detectable levels of HDM-specific IgG₁and IgA were seen in BAL fluid of allergen-challenged lungs. In contrast, minimal antibody reactivity was observed to Der p 2. Marked T cell proliferation and late phase cutaneous responses, accompanied by the recruitment of eosinophils, indicates the induction of a cellular and delayed-type hypersensitivity (DTH) type II response by HDM and Der p 1 allergen, but not Der p 2.</p> <p>Conclusion</p> <p>This work characterizes the humoral and cellular immune effects of HDM extract and its major constituent allergens in sheep sensitized to HDM. The effects of allergen in HDM-sensitized sheep were detectable both locally and systemically, and probably mediated via enzymatic and immune actions of the major HDM allergen Der p 1. This study extends our understanding of the actions of this important allergen relevant to human allergic asthma and its effects in sheep experimentally sensitized to HDM allergens.</p

Costs and benefits of social relationships in the collective motion of bird flocks

This is the author accepted manuscript. The final version is available from Nature Research via the DOI in this record.Supplementary Figs. 1–12 and Supplementary Tables 1–3 are available in the Supplementary Information. Raw images captured by one of the four cameras and the reconstructed birds’ 3D movement trajectories are provided in Supplementary Videos 1–6. Plain text files, each including bird ID number, position, time, velocity, acceleration and wingbeat frequency at every time step, are provided in Supplementary Data 1–7. A plain text file that includes mean wingbeat frequency, flight speed and local density (approximated by the number of neighbours within a distance of 5 m from the focal bird) for paired and unpaired birds in six flocks, as well as for birds flying alone, is provided in Supplementary Data 8. All data required to reproduce the results in this study are included in Supplementary Data 1–8. Supplementary Data and Supplementary Videos are available at https://figshare.com/s/c55eb82bab800571d25d.Current understanding of collective behaviour in nature is based largely on models that assume that identical agents obey the same interaction rules, but in reality interactions may be influenced by social relationships among group members. Here, we show that social relationships transform local interactions and collective dynamics. We tracked individuals’ three-dimensional trajectories within flocks of jackdaws, a species that forms lifelong pair-bonds. Reflecting this social system, we find that flocks contain internal sub-structure, with discrete pairs of individuals tied together by spring-like effective forces. Within flocks, paired birds interacted with fewer neighbours than unpaired birds and flapped their wings more slowly, which may result in energy savings. However, flocks with more paired birds had shorter correlation lengths, which is likely to inhibit efficient information transfer through the flock. Similar changes to group properties emerge naturally from a generic self-propelled particle model. These results reveal a critical tension between individual- and group-level benefits during collective behaviour in species with differentiated social relationships, and have major evolutionary and cognitive implications.Human Frontiers in Science Programm

Local interactions and their group-level consequences in flocking jackdaws

This is the author accepted manuscript. The final version is available from the Royal Society via the DOI in this recordData accessibility: Data and code are available from the Dryad Digital Repository: https://doi.org/10.5061/dryad.kb8js06As one of nature's most striking examples of collective behaviour, bird flocks have attracted extensive research. However, we still lack an understanding of the attractive and repulsive forces that govern interactions between individuals within flocks and how these forces influence neighbours' relative positions and ultimately determine the shape of flocks. We address these issues by analysing the three-dimensional movements of wild jackdaws (Corvus monedula) in flocks containing 2–338 individuals. We quantify the social interaction forces in large, airborne flocks and find that these forces are highly anisotropic. The long-range attraction in the direction perpendicular to the movement direction is stronger than that along it, and the short-range repulsion is generated mainly by turning rather than changing speed. We explain this phenomenon by considering wingbeat frequency and the change in kinetic and gravitational potential energy during flight, and find that changing the direction of movement is less energetically costly than adjusting speed for birds. Furthermore, our data show that collision avoidance by turning can alter local neighbour distributions and ultimately change the group shape. Our results illustrate the macroscopic consequences of anisotropic interaction forces in bird flocks, and help to draw links between group structure, local interactions and the biophysics of animal locomotion.Human Frontiers in Science Programm

Protein A-conjugated iron oxide nanoparticles for separation of Vibrio cholerae from water samples.

Pathogen separation is of great significance for precise detection and prevention of disease outbreaks. For the first time, protein A conjugated with chitosan-coated iron oxide nanoparticles was prepared for pathogen separation at low concentrations from liquid samples. Vibrio cholerae O1 (VO1) bacteria were used for testing the effectiveness of this conjugate. Transmission electron microscopy (TEM) was used to confirm the presence of captured VO1. The results showed that, after binding with a specific antibody, the conjugate allows separation of VO1 bacteria from water samples at a concentration as low as 10 cfu mL(-1). Moreover, the conjugate can be used in parallel with conventional or modern diagnostic tests for quick and accurate detection of pathogens

Energy Management and Time Scheduling for Heterogeneous IoT Wireless-Powered Backscatter Networks

© 2019 IEEE. In this paper, we propose a novel approach to jointly address energy management and network throughput maximization problems for heterogeneous IoT low-power wireless communication networks. In particular, we consider a low-power communication network in which the IoT devices can harvest energy from a dedicated RF energy source to support their transmissions or backscatter the signals of the RF energy source to transmit information to the gateway. Different IoT devices may have dissimilar hardware configurations, and thus they may have various communications types and energy requirements. In addition, the RF energy source may have a limited energy supply source which needs to be minimized. Thus, to maximize the network throughput, we need to jointly optimize energy usage and operation time for the IoT devices under different energy demands and communication constraints. However, this optimization problem is non-convex due to the strong relation between energy supplied by the RF energy source and the IoT communication time, and thus obtaining the optimal solution is intractable. To address this problem, we study the relation between energy supply and communication time, and then transform the non-convex optimization problem to an equivalent convex-optimization problem which can achieve the optimal solution. Through simulation results, we show that our solution can achieve greater network throughputs (up to five times) than those of other conventional methods, e.g., TDMA. In addition, the simulation results also reveal some important information in controlling energy supply and managing low-power IoT devices in heterogeneous wireless communication networks

Heart failure is associated with exaggerated endothelial ischaemia-reperfusion injury and attenuated effect of ischaemic preconditioning

Background Reperfusion is mandatory after ischaemia, but it also triggers ischaemia–reperfusion (IR)-injury. It is currently unknown whether heart failure alters the magnitude of IR-injury. Ischaemic preconditioning can limit IR-injury. Since ischaemic preconditioning is typically applied in subjects at risk for cardiovascular complications, it is of clinical importance to understand its efficacy in heart failure patients. Objective To examine the magnitude of endothelial IR-injury, and the ability of ischaemic preconditioning to protect against endothelial IR-injury in heart failure. Methods We included 15 subjects with heart failure (67 ± 10 years, New York Heart Association class II/III) and 15 healthy, age- and sex-matched controls (65 ± 9 years). We examined brachial artery endothelial function using flow-mediated dilation before and after arm IR (induced by 5-min ischaemic handgrip exercise +15 min reperfusion). IR was preceded by ischaemic preconditioning (consisting in three cycles of 5-min upper arm cuff inflation to 220 mmHg) or no inflation. Results A significant interaction-effect was found for the change in flow-mediated dilation after IR between groups (two-way ANOVA interaction-effect: p = 0.01). Whilst post-hoc analysis revealed a significantly decline in flow-mediated dilation in both groups (p < 0.05), the decline in flow-mediated dilation in heart failure patients (6.2 ± 3.6% to 3.3 ± 1.8%) was significantly larger than that observed in controls (4.9 ± 2.1 to 4.1 ± 2.0). Neither in heart failure patients nor controls was the decrease in flow-mediated dilation after IR altered by ischaemic preconditioning (three-way ANOVA interaction: p = 0.87). Conclusion We found that patients with heart failure are associated with exaggerated endothelial IR-injury compared with age- and sex-matched, healthy controls, which may contribute to the poor clinical prognosis in heart failure. Furthermore, we found no protective effect of ischaemic preconditioning (3 × 5-min forearm ischaemia) against endothelial IR-injury in heart failure patients

Behavioural plasticity and the transition to order in jackdaw flocks

This is the final version. Available on open access from Nature Research via the DOI in this recordData availability: Raw images captured by one of the four cameras and the reconstructed 3D movement trajectories of the jackdaws are provided in Supplementary Movies 1 to 3. The group density and group order for 154 groups are provided in Supplementary Data 1. Plain text files, each including bird ID number, position, time, and velocity at every time step are provided in Supplementary Data 2 to 4. All data required to reproduce the results in this study are included in Supplementary Data 1 to 4. The data analysis codes (including the self-propelled particle model) to generate all figures in the paper are also provided. Supplementary Data, Supplementary Movies, and data analysis codes are available at: https://figshare.com/s/472d354cc9e823a8f48fCollective behaviour is typically thought to arise from individuals following fixed interaction rules. The possibility that interaction rules may change under different circumstances has thus only rarely been investigated. Here we show that local interactions in flocks of wild jackdaws (Corvus monedula) vary drastically in different contexts, leading to distinct group-level properties. Jackdaws interact with a fixed number of neighbours (topological interactions) when traveling to roosts, but coordinate with neighbours based on spatial distance (metric interactions) during collective anti-predator mobbing events. Consequently, mobbing flocks exhibit a dramatic transition from disordered aggregations to ordered motion as group density increases, unlike transit flocks where order is independent of density. The relationship between group density and group order during this transition agrees well with a generic self-propelled particle model. Our results demonstrate plasticity in local interaction rules and have implications for both natural and artificial collective systems.Human Frontier Science Progra