Disk galaxies with broken luminosity profiles from cosmological simulations

We present SPH cosmological simulations of the formation of three disk galaxies with a detailed treatment of chemical evolution and cooling. The resulting galaxies have properties compatible with observations: relatively high disk-to-total ratios, thin stellar disks and good agreement with the Tully-Fisher and the luminosity-size relations. They present a break in the luminosity profile at 3.0 +- 0.5 disk scale lengths, while showing an exponential mass profile without any apparent breaks, in line with recent observational results. Since the stellar mass profile is exponential, only differences in the stellar populations can be the cause of the luminosity break. Although we find a cutoff for the star formation rate imposed by a density threshold in our star formation model, it does not coincide with the luminosity break and is located at 4.3 +- 0.4 disk scale lengths, with star formation going on between both radii. The color profiles and the age profiles are "U-shaped", with the minimum for both profiles located approximately at the break radius. The SFR to stellar mass ratio increases until the break, explaining the coincidence of the break with the minimum of the age profile. Beyond the break we find a steep decline in the gas density and, consequently, a decline in the SFR and redder colors. We show that most stars (64-78%) in the outer disk originate in the inner disk and afterwards migrate there. Such stellar migrations are likely the main origin of the U-shaped age profile and, therefore, of the luminosity break.Comment: 8 pages, 4 figures. Accepted by ApJ

Human Amniocytes Are Receptive to Chemically Induced Reprogramming to Pluripotency

Restoring pluripotency using chemical compounds alone would be a major step forward in developing clinical-grade pluripotent stem cells, but this has not yet been reported in human cells. We previously demonstrated that VPA_ AFS cells, human amniocytes cultivated with valproic acid (VPA) acquired functional pluripotency while remaining distinct from human embryonic stem cells (hESCs), questioning the relationship between the modulation of cell fate and molecular regulation of the pluripotency network. Here, we used single-cell analysis and functional assays to reveal that VPA treatment resulted in a homogeneous population of self-renewing non-transformed cells that fulfill the hallmarks of pluripotency, i.e., a short G1 phase, a dependence on glycolytic metabolism, expression of epigenetic modifications on histones 3 and 4, and reactivation of endogenous OCT4 and downstream targets at a lower level than that observed in hESCs. Mechanistic insights into the process of VPA-induced reprogramming revealed that it was dependent on OCT4 promoter activation, which was achieved independently of the PI3K (phosphatidylinositol 3-kinase)/ AKT/ mTOR (mammalian target of rapamycin) pathway or GSK3 beta inhibition but was concomitant with the presence of acetylated histones H3K9 and H3K56, which promote pluripotency. Our data identify, for the first time, the pluripotent transcriptional and molecular signature and metabolic status of human chemically induced pluripotent stem cells

Entropy based parametrization of soils: Models and Tools

Particle-size distribution (PSD) is a fundamental soil physical property. The PSD is commonly reported in terms of the mass percentages of sand, silt and clay present

Sustainable Materials and Biorefinery Chemicals from Agriwastes

This is an open access chapter distributed under the terms of the Creative Commons Attribution License.-- et al.Countries with economies based on agriculture generate vast amounts of low or null value wastes which may even represent an environmental hazard. In our group, agricultural industrial wastes have been converted into value added liquid substances and materials with several aims: decreasing pollution, giving added value to wastes and working in a sustainable manner in which the wastes of an industry can be used as the raw materials of the same or others, as the “cradle to cradle” philosophy states [1]. Sub-products from the agricultural food industry are being employed as renewable low cost raw materials in the preparation of Ecomaterials, designed for use in a number of industrial processes of great interest. Given their origin, these materials may compete with conventional ones since with this process a sustainable cycle is closed, in which the residues of one industry are used as raw materials in the same or other industries [2]. With regards to the composition of the residues produced from agriculture, the pH of soil is of great importance, since plants can only absorb the minerals that are dissolved in water and pH is mandatory for the physical, chemical and biological properties of soil and the main cause of many agronomic questions related to nutrient assimilation [3-5]. Variations of pH modify the solubility of most elements necessary for the development of crops and also influence the microbian activity of soil, which will affect the transformation of elements that are liberated to the soil and can be assimilated to form crops or not [3]. For example at pH lower than 6 or higher than 8 bacterian activities are lowered, the oxidation of nitrogen to nitrate is reduced and the amount of nitrogen available for plant food is decreased. However Al, Fe and manganese are more soluble at low pHs, reaching even toxic concentrations. Potassium and sulphur are easily adsorbed at pH higher than 6, calcium and magnesium between 7 and 8.5 and iron at pH lower than 6. For alkaline pH in soil, the availability of H2PO4-can be reduced through precipitation of phosphorous containing salts withcations such as calcium Ca2+ or magnesium Mg2+. However when soils have acid pH other compounds with HPO42-and iron (Fe2+), aluminium (Al3+) and manganese (Mn2+) can form, with increased solubility. The main factors that influence soil pH are the mineral composition and how it meteorizes, the decomposition of organic matter, how nutrients are partitioned among the solution and aggregates and of course the pluviometryof the zone and atmospheric contamination.Lower pHs are found in places with high pluviometry, with high organic matter decomposition, young soils developed on acid substrates, and places with high atmospheric contamination (acid rain). Depending on the species, crops can benefit from calcareous soils with high calcium carbonate content such as alfalfa, but other plants prefer soils with acid pH such as potatoes, coffee or tobacco. It is clear that different seasons will produce plants with a varying composition depending on the atmospheric conditions and therefore the materials derived from them need to be characterised and analysed to determine their possible uses.Given its multidisciplinary approach, this work is being carried out through the collaboration among national (Institute of Materials Science of Madrid (ICMM, CSIC), Institute of Catalysis (ICP, CSIC), Centre of Molecular Biology Severo Ochoa (UAM-CSIC), Polytechnic University of Madrid (UPM), University at distance (UNED), University Complutense of Madrid (UPM) and international (University of Sheffield and University of Ghent) research groups, in addition to various industries interested in the transformation of their residues and or sub-products into “value added materials”, with whom various research projects have been and are being sponsored by the MICINN and CDTI.Peer Reviewe

Interplay of Mre11 Nuclease with Dna2 plus Sgs1 in Rad51-Dependent Recombinational Repair

The Mre11/Rad50/Xrs2 complex initiates IR repair by binding to the end of a double-strand break, resulting in 5′ to 3′ exonuclease degradation creating a single-stranded 3′ overhang competent for strand invasion into the unbroken chromosome. The nuclease(s) involved are not well understood. Mre11 encodes a nuclease, but it has 3′ to 5′, rather than 5′ to 3′ activity. Furthermore, mutations that inactivate only the nuclease activity of Mre11 but not its other repair functions, mre11-D56N and mre11-H125N, are resistant to IR. This suggests that another nuclease can catalyze 5′ to 3′ degradation. One candidate nuclease that has not been tested to date because it is encoded by an essential gene is the Dna2 helicase/nuclease. We recently reported the ability to suppress the lethality of a dna2Δ with a pif1Δ. The dna2Δ pif1Δ mutant is IR-resistant. We have determined that dna2Δ pif1Δ mre11-D56N and dna2Δ pif1Δ mre11-H125N strains are equally as sensitive to IR as mre11Δ strains, suggesting that in the absence of Dna2, Mre11 nuclease carries out repair. The dna2Δ pif1Δ mre11-D56N triple mutant is complemented by plasmids expressing Mre11, Dna2 or dna2K1080E, a mutant with defective helicase and functional nuclease, demonstrating that the nuclease of Dna2 compensates for the absence of Mre11 nuclease in IR repair, presumably in 5′ to 3′ degradation at DSB ends. We further show that sgs1Δ mre11-H125N, but not sgs1Δ, is very sensitive to IR, implicating the Sgs1 helicase in the Dna2-mediated pathway

The outer disks of galaxies: "To be or not to be truncated?"

We have in recent years come to view the outer parts of galaxies as having vital clues about their formation and evolution. Here, we would like to briefly present our results from a complete sample of nearby, late-type, spiral galaxies, using data from the SDSS survey, especially focused on the stellar light distribution in the outer disk. Our study shows that only the minority of late-type galaxies show a classical, exponential Freeman Type I profile down to the noise limit, whereas the majority exhibit either downbending (stellar truncation as introduced 1979 by Piet van der Kruit) or upbending profiles.Comment: LaTeX, 6 pages. To appear in the proceedings of the "Island Universes: Structure and Evolution of Disk Galaxies" conference held in Terschelling, Netherlands, July 2005, ed. R. de Jong (Springer: Dordrecht

Morphologies of local Lyman break galaxy analogs II: A Comparison with galaxies at z=2-4 in ACS and WFC3 images of the Hubble Ultra Deep Field

Lyman break galaxies (LBGs) display a range in structures (from single/compact to clumpy/extended) that is different from typical local star-forming galaxies. Recently, we have introduced a sample of rare, nearby (z<0.3) starbursts that appear to be good analogs of LBGs. These "Lyman Break Analogs" (LBAs) provide an excellent training set for understanding starbursts at different redshifts. We present an application of this by comparing the rest-frame UV/optical morphologies of 30 LBAs with those of sBzK galaxies at z~2, and LBGs at z~3-4 in the HUDF. The UV/optical colors and sizes of LBAs and LBGs are very similar, while the BzK galaxies are somewhat redder and larger. There is significant overlap between the morphologies (G, C, A and M_20) of the local and high-z samples, although the latter are somewhat less concentrated and clumpier. We find that in the majority of LBAs the starbursts appear to be triggered by interactions/mergers. When the images of the LBAs are degraded to the same sensitivity and resolution as the images of LBGs and BzK galaxies, these relatively faint asymmetric features are no longer detectable. This effect is particularly severe in the rest-frame UV. It has been suggested that high-z galaxies experience intense bursts unlike anything seen locally, possibly due to cold flows and instabilities. In part, this is based on the fact that the majority (~70%) of LBGs do not show morphological signatures of mergers. Our results suggest that this evidence is insufficient, since a large fraction of such signatures would likely have been missed in current observations of z>2 galaxies. This leaves open the possibility that clumpy accretion and mergers remain important in driving the evolution of these starbursts, together with rapid gas accretion through other means.Comment: ApJ, In Press (14 pages, 7 figures; minor changes since v1). For background material, see http://www.mpa-garching.mpg.de/~overzier/index.htm

The unusual NIV]-emitter galaxy GDS J033218.92-275302.7: star formation or AGN-driven winds from a massive galaxy at z=5.56

Aims: We investigate the nature of the source GDS J033218.92-275302.7at redshift ~ 5.56. Methods: The SED of the source is well sampled by 16 bands photometry, from UV-optical, near infrared and mid-infrared (MID-IR).The detection of signal in the MID-IR Spitzer/IRAC bands 5.8, 8.0 um -- where the nebular emission contribution is less effective -- suggests the presence of a Balmer break, signature of an underlying stellar population formed at earlier epochs. The optical spectrum shows a clear Lya emission line together with semi-forbidden NIV] 1483.3-1486.5 also in emission. Results: From the SED fitting and the Lya modelling it turns out that the source seems to have an evolved component with stellar mass of ~5 x10^(10) Msolar and age ~ 0.4 Gyrs, and a young component with an age of ~ 0.01 Gyrs and SFR in the range of 30-200 Msolar yr^(-1). The limits on the effective radius derived from the ACS/z850 and VLT/Ks bands indicate that this galaxy is denser than the local ones with similar mass. A relatively high nebular gas column density is favored from the Lya line modelling (NHI>=10^(21) cm^(-2)). A vigorous outflow (~ 450 km/s) has been measured from the optical spectrum,consistent with the Lya modelling. From ACS observations it turns out that the region emitting Lya photons is spatially compact and of the same order of the effective radius estimated at the ~1400A rest-frame wavelength, whose emission is dominated by the stellar continuum and/or AGN. The gas is blown out from the central region,but given the mass of the galaxy it is uncertain whether it will pollute the IGM to large distances. We argue that a burst of star formation in a dense gas environment is active (possibly containing hot and massive stars and/or a low luminosity AGN), superimposed to an already formed fraction of stellar mass (abridged).Comment: 13 pages, 9 figures (published on A&A). Here replaced with a typo fixed in the footnote of Sect. 4.2 and with four updated references. Results unchange