A unilateral nonlocal tensile damage model for masonry structures

Abstract In the present paper, a constitutive nonlocal damage model is proposed for the non-linear incremental finite element analysis of masonry structures. The mechanical model is based on the assumptions of linear elasticity under compression and softening behaviour under tension, described by the adoption of a unique strain-driven nonlocal damage variable. Specifically, non-locality of the integral type is introduced in order to prevent spurious strain localization. It can be noted that the unilateral nature of the model is suitable to contemplate both diffused macro-cracks induced by the tensile damage process and the stiffness recovery in the transition from tension to compression, considering the anisotropy induced by the damage process as well. This is performed by realizing a decomposition of the strain tensor in its positive and negative components, and accounting for stiffness degradation only along tensile direction. The assumption of a linear elastic behaviour in compression is motivated by the fact that the main interest of the model is represented by investigating the response of masonry structures under service loads, condition in which very low compressive states are usually predominant. Consequently, the number of constitutive parameters is more limited with respect to other models that include a damage criterion also in compression. Finally, the validation of the proposed damage model is carried out with reference to a plane problem, in order to check the capability of the model to treat damage in an anisotropic way as well as the almost null dependence of the results on the discretization

Cracking of quasi-brittle structures under monotonic and cyclic loadings: A d+/d− damage model with stiffness recovery in shear

In the present paper, a new d+/d− damage model apt for quasi-brittle materials is described and its validation is carried out considering unreinforced concrete, reinforced concrete and masonry elements. Two independent scalar damage variables, d+ and d−, in combination with the split of the reversible strain tensor into its positive and negative counterparts, are adopted in order to simulate the pronounced dissimilar response under tension and compression, typical of these materials. An energy-equivalent framework is considered for representing the orthotropy induced in the material by the degradation process, with the consequence that a thermodynamically consistent constitutive operator, positive definite, symmetric and strain-driven, is derived. In addition to the degradation parameters, the permanent strain tensor is also contemplated by the model and a modification of the exponential softening modulus is proposed in order to treat the evolution of the two causes of dissipation, damage and irreversible deformations, in a coupled way. The formulation is integrated with a multidirectional damage procedure, addressed to extend the microcrack closure-reopening (MCR) capabilities of the model to shear cyclic conditions, characterized by orthogonal (or however intersecting) sets of cracks. Maintaining unaltered the dependence of the constitutive law from two scalar indeces, d+ and d−, this approach activates or deactivates a tensile(compressive) damage value on the base of the current maximum (minimum) principal strain direction. In correspondence with damage activation (crack opening) or deactivation (crack closure), a smooth transition is introduced, in order to avoid abrupt changes in stiffness and enhance the numerical performance and robustness of the multidirectional procedure. The adequacy of the proposed constitutive model in reproducing experimental results has been proven for both monotonic and cyclic loading conditions. The two examples of application involving cyclic loads, dominated by shear, constitute a validation of the multidirectional damage approach, showing how the suitable representation of unilateral effects and permanent deformations is essential to model the observed structural response in terms of maximum resistance, evolution of stiffness degradation and dissipation capacity

Self-association of a highly charged, arginine-rich cell-penetrating peptide

Small angle X-ray scattering (SAXS) measurements reveal a striking difference in intermolecular interactions between two short, highly charged peptides, namely deca-arginine (R10) and deca-lysine (K10). Comparison of SAXS curves at high and low salt concentration shows that R10 self-associates, while interactions between K10 chains are purely repulsive. The self-association of R10 occurs to a larger extent at low ionic strength indicating that the attraction between R10 molecules has an important electrostatic component. SAXS data is complemented by potentials of mean force between the peptides calculated by means of umbrella sampling molecular dynamics (MD) simulations. Atomistic MD simulations elucidate the origin of the R10-R10 attraction by providing structural information on the dimeric state: the last two C-terminal residues of R10 constitute an adhesive patch achieved by stacking of the side chains of two arginine residues and by salt bridges formed between the like-charge ion-pair and C-terminal carboxyl groups. A statistical analysis of the protein data bank reveals that this mode of interaction commonly occurs in proteins. Please click Additional Files below to see the full abstract

Climatic and anthropogenic factors explain the variability of Fagus sylvatica treeline elevation in fifteen mountain groups across the Apennines

Abstract Background Fagus sylvatica forms the treeline across the Apennines mountain range, with an average elevation of 1589 m a.s.l. Previous studies evidenced that the current position of the treeline in the Apennines is heavily depressed as a result of a complex interaction between climatic factors and the past human pressure. In this study we correlated treeline elevation in the fifteen major mountain groups in the Apennines with selected climatic, geomorphological, and human disturbance variables in order to investigate in detail the site-specific features affecting the current treeline distribution. Results Treeline elevation was lowest in the North Italy (Apuan Alps), while the highest treeline was found in Central Italy (Simbruini). An absolute maximum treeline elevation of F. sylvatica exceeding 2000 m a.s.l. was found on 13 mountain peaks in Central and Southern Italy. Noteworthy, treeline elevation was largely lower on warmer south-facing slopes compared to northern slopes, with values several hundred meters lower in the Gran Sasso and Velino-Sirente. Although the causes of this pattern are still unknown, we argue that treeline elevation on south-facing slopes may be limited by the combination of climatic constraints (i.e. summer drought) and human disturbance. Evidence of a pervasive anthropogenic effect depressing treeline elevation was found in the North (Apuan Alps) Central (Gran Sasso, Velino-Sirente, Sibillini) and Southern part of Apennines (Pollino). By contrast, treeline elevation of the Laga, Simbruini, and Orsomarso mountain groups appears less affected by past anthropogenic disturbance. Finally, we recorded in the several mountain groups (i.e. Majella, Marsicani and Pollino) the coexistence of very depressed treelines just a few kilometers away from much higher treelines, among the highest ever recorded for F. sylvatica. Conclusions Finally, we argue that F. sylvatica treeline across the Apennines is locally shaped both by the interaction of low temperatures experienced by the species in its earliest life stages in snow-free open spaces with summer soil water depletion and human disturbance

The effect of linker conformation on performance and stability of a two-domain lytic polysaccharide monooxygenase

publishedVersio

Structure and dynamics of a nanodisc by integrating NMR, SAXS and SANS experiments with molecular dynamics simulations.

Nanodiscs are membrane mimetics that consist of a protein belt surrounding a lipid bilayer, and are broadly used for characterization of membrane proteins. Here, we investigate the structure, dynamics and biophysical properties of two small nanodiscs, MSP1D1ΔH5 and ΔH4H5. We combine our SAXS and SANS experiments with molecular dynamics simulations and previously obtained NMR and EPR data to derive and validate a conformational ensemble that represents the structure and dynamics of the nanodisc. We find that it displays conformational heterogeneity with various elliptical shapes, and with substantial differences in lipid ordering in the centre and rim of the discs. Together, our results reconcile previous apparently conflicting observations about the shape of nanodiscs, and pave the way for future integrative studies of larger complex systems such as membrane proteins embedded in nanodiscs

Anti-tumor Efficacy Assessment of the Sigma Receptor Pan Modulator RC-106. A Promising Therapeutic Tool for Pancreatic Cancer

Introduction: Pancreatic cancer (PC) is one of the most lethal tumor worldwide, with no prognosis improvement over the past 20-years. The silent progressive nature of this neoplasia hampers the early diagnosis, and the surgical resection of the tumor, thus chemotherapy remains the only available therapeutic option. Sigma receptors (SRs) are a class of receptors proposed as new cancer therapeutic targets due to their over-expression in tumor cells and their involvement in cancer biology. The main localization of these receptors strongly suggests their potential role in ER unfolded protein response (ER-UPR), a condition frequently occurring in several pathological settings, including cancer. Our group has recently identified RC-106, a novel pan-SR modulator with good in vitro antiproliferative activities toward a panel of different cancer cell lines. In the present study, we investigated the in vitro properties and pharmacological profile of RC-106 in PC cell lines with the aim to identify a potential lead candidate for the treatment of this tumor.Methods: Pancreatic cancer cell lines Panc-1, Capan-1, and Capan-2 have been used in all experiments. S1R and TMEM97/S2R expression in PC cell lines was quantified by Real-Time qRT-PCR and Western Blot experiments. MTS assay was used to assess the antiproliferative effect of RC-106. The apoptotic properties of RC-106 was evaluated by TUNEL and caspase activation assays. GRP78/BiP, ATF4, and CHOP was quantified to evaluate ER-UPR. Proteasome activity was investigated by a specific fluorescent-based assay. Scratch wound healing assay was used to asses RC-106 effect on cell migration. In addition, we delineated the in vivo pharmacokinetic profile and pancreas distribution of RC-106 in male CD-1 mice.Results: Panc-1, Capan-1, and Capan-2 express both SRs. RC-106 exerts an antiproliferative and pro-apoptotic effect in all examined cell lines. Cells exposure to RC-106 induces the increase of the expression of ER-UPR related proteins, and the inhibition of proteasome activity. Moreover, RC-106 is able to decrease PC cell lines motility. The in vivo results show that RC-106 is more concentrated in pancreas than plasma.Conclusion: Overall, our data evidenced that the pan-SR modulator RC-106 is an optimal candidate for in vivo studies in animal models of PC

New national and regional Annex I Habitat records: from #60 to #82

New Italian data on the distribution of the Annex I Habitats are reported in this contribution. Specifically, 8 new occurrences in Natura 2000 sites are presented and 49 new cells are added in the EEA 10 km × 10 km reference grid. The new data refer to the Italian administrative regions of Campania, Calabria, Marche, Piedmont, Sardinia, Sicily, Tuscany and Umbria. Relevés and figures are provided as Supplementary material respectively 1 and 2

An overview of the Italian forest biodiversity and its conservation level, based on the first outcomes of the 4th Habitat Report ex-Art. 17

In 2019 the 4th Report ex-Art. 17 on the conservation status (CS) of Annex I Habitats of the 92/43/EEC Directive was expected by every EU/28 country, with reference to the period 2013-18. In Italy, the process was in charge to the Italian Institute for Environmental Protection and Research (ISPRA), on behalf of the Ministry for Environment, Land and Sea Protection (MATTM), with the scientific support of the Italian Botanical Society (SBI). A large group of thematic and territorial experts elaborated the available data concerning the 124 types of terrestrial and inland water Habitats present in Italy, 39 of which are represented by Forest Habitats (Group 9),. The main aim of the work was the evaluation of the overall CS of each Habitat by Biogeographic Region (Mediterranean, Continental and Alpine), for a total amount of 294 assessments. A high proportion of these (92, corresponding to 31% of the total) referred to Forest Habitats, including 20 marginal types for which the CS was not requested. The analysis was carried out at different scales: a) administrative territory, through the data contained in the ISPRA database, whose compilation was in charge to the Regions and Autonomous Provinces; b) Natura 2000 site, with the latest updates available (Standard Data Forms updated to 2018); c) national scale, implementing the distribution maps for each Habitat based on the European grid ETRS89-LAEA5210 (10x10 km2 mesh); d) Biogeographic Region, scale of the final assessment. Cartographic outcomes, associated databases and additional data used for the assessments will be available online on the ISPRA Portal as soon as the validation process by the European Commission will be completed. A dedicated archive named "HAB_IT" has been created in the national database "VegItaly" (1), managed by the Italian Society of Vegetation Science, where the phytosociological relevés representative of the various Annex I Habitats in Italy will be archived and freely accessible. An overview of the results regarding the Forest habitats is here provided, including a comparison with the outcomes of the former reporting cycle, the 3rd Report ex-Art. 17 (2). In several cases (e.g. 9120, 91L0), the distribution maps have been remarkably improved due to better knowledge and more fitful interpretation. The conservation status resulted as Favourable (FV) for 6,7%, Inadequate (U1) for 58,7% and Bad (U1) for 32,0% of the 72 assessed forest Habitat types. In no case there was an improvement of the conservation status, while in 6 cases a worsening of the conditions resulted from the data analysis, pointing out the Habitats types with a higher need of action. Similarly to other projects carried out as a team by the network of Annex I Habitat experts of the Italian Botanical Society and the Italian Society for Vegetation Science (e.g. 3, 4), this is another step in the direction of supporting the implementation of the 92/43/EEC "Habitat" Directive in Italy and Europe. On this ground, the high biodiversity of the Italian forest Habitats could be emphasized, however results pointed out that some rare or endemic types (e.g. Alnus cordata or Betula aetnensis-dominated forests) are still scarcely acknowledged by the most prominent EU conservation tools such as the Annex I to the "Habitat" Directive. 1) F. Landucci et al. (2012) Plant Biosyst., 146(4), 756-763 2) P. Genovesi et al. (2014) ISPRA, Serie Rapporti, 194/2014 3) E. Biondi et al. (2009) Società Botanica Italiana, MATTM, D.P.N., http://vnr.unipg.it/habitat/ 4) D. Gigante et al. (2016) Plant Sociology, 53(2), 77-8