Breeding Birds in Cedar Stands in the Great Dismal Swamp

The Great Dismal Swamp located in the coastal plain on the Virginia- North Carolina border, has long been recognized as a vegetationally distinctive region with many unusual geological and biological features. Formerly at least twice the currently estimated size of 85,000 hectares (Carter 1979), the Great Dismal Swamp is still shrinking because of a dropping water table caused by more than 200 years of logging, ditching, and other human activities. In 1973, the Union Camp Corporation donated a 19,871-hectare tract located near Suffolk, Virginia. to The Nature Conservancy, which transferred the land to the U.S. Fish and Wildlife Service. This parcel, all in Virginia and including the 1255-hectare Lake Drummond, became the core of the Great Dismal Swamp National Wildlife Refuge (hereafter, G.D.S.N.W.R.), established in 1974. The G.D.S.N.W.R. is still growing in size by the acquisition of land by purchase or by gift; by the end of 1980, it was 41,026 hectares, with 24 per cent (9866 hectares) in North Carolina

Manual pages for SAGA software tools, appendix H

Several pages from the SAGA UNIX programmer's manual are presented. These pages are for SAGA software tools

Building Undergraduate Research in a Fully Online Engineering Program

This paper describes the creation and implementation of the support network of the Research Scholars Program at the Worldwide campus of Embry-Riddle Aeronautical University. Funded by an NSF IUSE grant, the purpose of this new program is to increase the opportunity for online engineering and engineering technology students to participate in undergraduate research. Studies have shown that participation in research can have an important impact on students, though online students are likely underrepresented in undergraduate research. The Research Scholars Program uses existing support systems of the campus while also building new components. These new components developed for this project are a research mentoring program, a workshop series, and a guided independent study course. The Research Scholars Program formalizes the process for online students at the Worldwide campus to participate in undergraduate research with a goal of having students publish and present their work

Board 256: Development and Evolution of Workshops to Support Online Undergraduate Research

Under a National Science Foundation (NSF) Improving Undergraduate STEM Education (IUSE) grant, the Research Scholars Program was developed at Embry-Riddle Aeronautical University — Worldwide. The objective of the Research Scholars Program is to promote undergraduate research for the online students at the Worldwide campus and to formalize the process in which the students can participate in research. A significant aspect of the project was to create a support network for the students that incorporated existing services provided by the university and established new services to aid students throughout their mentored research experience. One of the new services was the development and delivery of starting in the second year of the grant and continuing through the third year. The purpose of the workshops is to introduce students to different aspects of research. The first series of workshops (offered in the 2021-2022 academic year) were mostly informational and provided initial support for undergraduate researchers. From the experience of developing and hosting the first series, the style of the second series (offered in the 2022-2023 academic year) was modified to try to promote more audience participation

SAGA: A project to automate the management of software production systems

The SAGA system is a software environment that is designed to support most of the software development activities that occur in a software lifecycle. The system can be configured to support specific software development applications using given programming languages, tools, and methodologies. Meta-tools are provided to ease configuration. The SAGA system consists of a small number of software components that are adapted by the meta-tools into specific tools for use in the software development application. The modules are design so that the meta-tools can construct an environment which is both integrated and flexible. The SAGA project is documented in several papers which are presented

Genetic structure along an elevational gradient in Hawaiian honeycreepers reveals contrasting evolutionary responses to avian malaria

<p>Abstract</p> <p>Background</p> <p>The Hawaiian honeycreepers (Drepanidinae) are one of the best-known examples of an adaptive radiation, but their persistence today is threatened by the introduction of exotic pathogens and their vector, the mosquito <it>Culex quinquefasciatus</it>. Historically, species such as the amakihi (<it>Hemignathus virens</it>), the apapane (<it>Himatione sanguinea</it>), and the iiwi (<it>Vestiaria coccinea</it>) were found from the coastal lowlands to the high elevation forests, but by the late 1800's they had become extremely rare in habitats below 900 m. Recently, however, populations of amakihi and apapane have been observed in low elevation habitats. We used twelve polymorphic microsatellite loci to investigate patterns of genetic structure, and to infer responses of these species to introduced avian malaria along an elevational gradient on the eastern flanks of Mauna Loa and Kilauea volcanoes on the island of Hawaii.</p> <p>Results</p> <p>Our results indicate that amakihi have genetically distinct, spatially structured populations that correspond with altitude. We detected very few apapane and no iiwi in low-elevation habitats, and genetic results reveal only minimal differentiation between populations at different altitudes in either of these species.</p> <p>Conclusion</p> <p>Our results suggest that amakihi populations in low elevation habitats have not been recolonized by individuals from mid or high elevation refuges. After generations of strong selection for pathogen resistance, these populations have rebounded and amakihi have become common in regions in which they were previously rare or absent.</p

Structure of the Mg-Chelatase Cofactor GUN4 Reveals a Novel Hand-Shaped Fold for Porphyrin Binding

In plants, the accumulation of the chlorophyll precursor Mg-protoporphyrin IX (Mg-Proto) in the plastid regulates the expression of a number of nuclear genes with functions related to photosynthesis. Analysis of the plastid-to-nucleus signaling activity of Mg-Proto in Arabidopsis thaliana led to the discovery of GUN4, a novel porphyrin-binding protein that also dramatically enhances the activity of Mg-chelatase, the enzyme that synthesizes Mg-Proto. GUN4 may also play a role in both photoprotection and the cellular shuttling of tetrapyrroles. Here we report a 1.78-Å resolution crystal structure of Synechocystis GUN4, in which the porphyrin-binding domain adopts a unique three dimensional fold with a “cupped hand” shape. Biophysical and biochemical analyses revealed the specific site of interaction between GUN4 and Mg-Proto and the energetic determinants for the GUN4 • Mg-Proto interaction. Our data support a novel protective function for GUN4 in tetrapyrrole trafficking. The combined structural and energetic analyses presented herein form the physical-chemical basis for understanding GUN4 biological activity, including its role in the stimulation of Mg-chelatase activity, as well as in Mg-Proto retrograde signaling

Right orbitofrontal corticolimbic and left corticocortical white matter connectivity differentiate bipolar and unipolar depression

Objectives - The absence of pathophysiologically relevant diagnostic markers of bipolar disorder (BD) leads to its frequent misdiagnosis as unipolar depression (UD). We aimed to determine whether whole brain white matter connectivity differentiated BD from UD depression. Methods - We employed a three-way analysis of covariance, covarying for age, to examine whole brain fractional anisotropy (FA), and corresponding longitudinal and radial diffusivity, in currently depressed adults: 15 with BD-type I (mean age 36.3 years, SD 12.0 years), 16 with recurrent UD (mean age 32.3 years, SD 10.0 years), and 24 healthy control adults (HC) (mean age 29.5 years, SD 9.43 years). Depressed groups did not differ in depression severity, age of illness onset, and illness duration. Results - There was a main effect of group in left superior and inferior longitudinal fasciculi (SLF and ILF) (all F = 9.8; p = .05, corrected). Whole brain post hoc analyses (all t = 4.2; p = .05, corrected) revealed decreased FA in left SLF in BD, versus UD adults in inferior temporal cortex and, versus HC, in primary sensory cortex (associated with increased radial and decreased longitudinal diffusivity, respectively); and decreased FA in left ILF in UD adults versus HC. A main effect of group in right uncinate fasciculus (in orbitofrontal cortex) just failed to meet significance in all participants but was present in women. Post hoc analyses revealed decreased right uncinate fasciculus FA in all and in women, BD versus HC. Conclusions - White matter FA in left occipitotemporal and primary sensory regions supporting visuospatial and sensory processing differentiates BD from UD depression. Abnormally reduced FA in right fronto-temporal regions supporting mood regulation, might underlie predisposition to depression in BD. These measures might help differentiate pathophysiologic processes of BD versus UD depression

Structural Studies of the Tandem Tudor Domains of Fragile X Mental Retardation Related Proteins FXR1 and FXR2

Expansion of the CGG trinucleotide repeat in the 5′-untranslated region of the FMR1, fragile X mental retardation 1, gene results in suppression of protein expression for this gene and is the underlying cause of Fragile X syndrome. In unaffected individuals, the FMRP protein, together with two additional paralogues (Fragile X Mental Retardation Syndrome-related Protein 1 and 2), associates with mRNA to form a ribonucleoprotein complex in the nucleus that is transported to dendrites and spines of neuronal cells. It is thought that the fragile X family of proteins contributes to the regulation of protein synthesis at sites where mRNAs are locally translated in response to stimuli.Here, we report the X-ray crystal structures of the non-canonical nuclear localization signals of the FXR1 and FXR2 autosomal paralogues of FMRP, which were determined at 2.50 and 1.92 Å, respectively. The nuclear localization signals of the FXR1 and FXR2 comprise tandem Tudor domain architectures, closely resembling that of UHRF1, which is proposed to bind methylated histone H3K9.The FMRP, FXR1 and FXR2 proteins comprise a small family of highly conserved proteins that appear to be important in translational regulation, particularly in neuronal cells. The crystal structures of the N-terminal tandem Tudor domains of FXR1 and FXR2 revealed a conserved architecture with that of FMRP. Biochemical analysis of the tandem Tudor doamins reveals their ability to preferentially recognize trimethylated peptides in a sequence-specific manner

Comparative Structural Analysis of Lipid Binding START Domains

Steroidogenic acute regulatory (StAR) protein related lipid transfer (START) domains are small globular modules that form a cavity where lipids and lipid hormones bind. These domains can transport ligands to facilitate lipid exchange between biological membranes, and they have been postulated to modulate the activity of other domains of the protein in response to ligand binding. More than a dozen human genes encode START domains, and several of them are implicated in a disease.We report crystal structures of the human STARD1, STARD5, STARD13 and STARD14 lipid transfer domains. These represent four of the six functional classes of START domains.Sequence alignments based on these and previously reported crystal structures define the structural determinants of human START domains, both those related to structural framework and those involved in ligand specificity.This article can also be viewed as an enhanced version in which the text of the article is integrated with interactive 3D representations and animated transitions. Please note that a web plugin is required to access this enhanced functionality. Instructions for the installation and use of the web plugin are available in Text S1