1,979 research outputs found
Neural Dynamics in Parkinsonian Brain:The Boundary Between Synchronized and Nonsynchronized Dynamics
Synchronous oscillatory dynamics is frequently observed in the human brain.
We analyze the fine temporal structure of phase-locking in a realistic network
model and match it with the experimental data from parkinsonian patients. We
show that the experimentally observed intermittent synchrony can be generated
just by moderately increased coupling strength in the basal ganglia circuits
due to the lack of dopamine. Comparison of the experimental and modeling data
suggest that brain activity in Parkinson's disease resides in the large
boundary region between synchronized and nonsynchronized dynamics. Being on the
edge of synchrony may allow for easy formation of transient neuronal
assemblies
Asynchronous response of coupled pacemaker neurons
We study a network model of two conductance-based pacemaker neurons of
differing natural frequency, coupled with either mutual excitation or
inhibition, and receiving shared random inhibitory synaptic input. The networks
may phase-lock spike-to-spike for strong mutual coupling. But the shared input
can desynchronize the locked spike-pairs by selectively eliminating the lagging
spike or modulating its timing with respect to the leading spike depending on
their separation time window. Such loss of synchrony is also found in a large
network of sparsely coupled heterogeneous spiking neurons receiving shared
input.Comment: 11 pages, 4 figures. To appear in Phys. Rev. Let
A quantitative real time PCR method to analyze T cell receptor Vβ subgroup expansion by staphylococcal superantigens
<p>Abstract</p> <p>Background</p> <p>Staphylococcal enterotoxins (SEs), SE-like (SEl) toxins, and toxic shock syndrome toxin-1 (TSST-1), produced by <it>Staphylococcus aureus</it>, belong to the subgroup of microbial superantigens (SAgs). SAgs induce clonal proliferation of T cells bearing specific variable regions of the T cell receptor β chain (Vβ). Quantitative real time PCR (qRT-PCR) has become widely accepted for rapid and reproducible mRNA quantification. Although the quantification of Vβ subgroups using qRT-PCR has been reported, qRT-PCR using both primers annealing to selected Vβ nucleotide sequences and SYBR Green I reporter has not been applied to assess Vβ-dependent expansion of T cells by SAgs.</p> <p>Methods</p> <p>Human peripheral blood mononuclear cells were stimulated with various SAgs or a monoclonal antibody specific to human CD3. Highly specific expansion of Vβ subgroups was assessed by qRT-PCR using SYBR Green I reporter and primers corresponding to selected Vβ nucleotide sequences.</p> <p>Results</p> <p>qRT-PCR specificities were confirmed by sequencing amplified PCR products and melting curve analysis. To assess qRT-PCR efficiencies, standard curves were generated for each primer set. The average slope and R<sup>2 </sup>of standard curves were -3.3764 ± 0.0245 and 0.99856 ± 0.000478, respectively, demonstrating that the qRT-PCR established in this study is highly efficient. With some exceptions, SAg Vβ specificities observed in this study were similar to those reported in previous studies.</p> <p>Conclusions</p> <p>The qRT-PCR method established in this study produced an accurate and reproducible assessment of Vβ-dependent expansion of human T cells by staphylococcal SAgs. This method could be a useful tool in the characterization T cell proliferation by newly discovered SAg and in the investigation of biological effects of SAgs linked to pathogenesis.</p
Double Neutron Star Systems and Natal Neutron Star Kicks
We study the four double neutron star systems found in the Galactic disk in
terms of the orbital characteristics of their immediate progenitors and the
natal kicks imparted to neutron stars. Analysis of the effect of the second
supernova explosion on the orbital dynamics, combined with recent results from
simulations of rapid accretion onto neutron stars lead us to conclude that the
observed systems could not have been formed had the explosion been symmetric.
Their formation becomes possible if kicks are imparted to the radio-pulsar
companions at birth. We identify the constraints imposed on the immediate
progenitors of the observed double neutron stars and calculate the ranges
within which their binary characteristics (orbital separations and masses of
the exploding stars) are restricted. We also study the dependence of these
limits on the magnitude of the kick velocity and the time elapsed since the
second explosion. For each of the double neutron stars, we derive a minimum
kick magnitude required for their formation, and for the two systems in close
orbits we find it to exceed 200km/s. Lower limits are also set to the
center-of-mass velocities of double neutron stars, and we find them to be
consistent with the current proper motion observations.Comment: 25 pages, 6 figs (9 parts), 4 tables, AASTeX, Accepted in Ap
Association of GH Gene Polymorphism with Semen Parameters of Boars
Relations between polymorphism of the Growth Hormone gene and semen characters were analyzed. The DNA for the purpose of examination was isolated from the peripheral blood of 173 boars. In the boar herd under study the frequency of allele occurrence for the GH/MspI was as follows: allele GHA - 0.79 and allele GHB - 0.21. As far as the GH/HaeII polymorphism is concerned, the relevant frequency was as follows: allele GHA - 0.53 and allele GHB - 0.47, respectively. The relationship between the GH genotypes and semen characteristic traits were analyzed. The study showed that boars with GHBGHB genotype of both polymorphous loci of the GH gene produced ejaculates of larger volume, higher percentage, number of normozosperms in the ejaculate and number of insemination as compared to GHA GHA and GHAGHB boars. Our current findings suggested that polymorphism of the GH/MspI and GH/HaeII might have potential effect for reproductive performance traits of boars
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Modelling Collision Products of Triple-Star Mergers
In dense stellar clusters, binary-single and binary-binary encounters can
ultimately lead to collisions involving two or more stars. A comprehensive
survey of multi-star collisions would need to explore an enormous amount of
parameter space, but here we focus on a number of representative cases
involving low-mass main-sequence stars. Using both Smoothed Particle
Hydrodynamics (SPH) calculations and a much faster fluid sorting software
package (MMAS), we study scenarios in which a newly formed product from an
initial collision collides with a third parent star. By varying the order in
which the parent stars collide, as well as the orbital parameters of the
collision trajectories, we investigate how factors such as shock heating affect
the chemical composition and structure profiles of the collision product. Our
simulations and models indicate that the distribution of most chemical elements
within the final product is not significantly affected by the order in which
the stars collide, the direction of approach of the third parent star, or the
periastron separations of the collisions. We find that the sizes of the
products, and hence their collisional cross sections for subsequent encounters,
are sensitive to the order and geometry of the collisions. For the cases that
we consider, the radius of the product formed in the first (single-single star)
collision ranges anywhere from roughly 2 to 30 times the sum of the radii of
its parent stars. The final product formed in our triple-star collisions can
easily be as large or larger than a typical red giant. We therefore expect the
collisional cross section of a newly formed product to be greatly enhanced over
that of a thermally relaxed star of the same mass.Comment: 20 pages, submitted to MNRA
The Intrinsic Origin of Spin Echoes in Dipolar Solids Generated by Strong Pi Pulses
In spectroscopy, it is conventional to treat pulses much stronger than the
linewidth as delta-functions. In NMR, this assumption leads to the prediction
that pi pulses do not refocus the dipolar coupling. However, NMR spin echo
measurements in dipolar solids defy these conventional expectations when more
than one pi pulse is used. Observed effects include a long tail in the CPMG
echo train for short delays between pi pulses, an even-odd asymmetry in the
echo amplitudes for long delays, an unusual fingerprint pattern for
intermediate delays, and a strong sensitivity to pi-pulse phase. Experiments
that set limits on possible extrinsic causes for the phenomena are reported. We
find that the action of the system's internal Hamiltonian during any real pulse
is sufficient to cause the effects. Exact numerical calculations, combined with
average Hamiltonian theory, identify novel terms that are sensitive to
parameters such as pulse phase, dipolar coupling, and system size.
Visualization of the entire density matrix shows a unique flow of quantum
coherence from non-observable to observable channels when applying repeated pi
pulses.Comment: 24 pages, 27 figures. Revised from helpful referee comments. Added
new Table IV, new paragraphs on pages 3 and 1
Staphylococcal entertotoxins of the enterotoxin gene cluster (egcSEs) induce nitrous oxide- and cytokine dependent tumor cell apoptosis in a broad panel of human tumor cells
International audienceThe egcSEs comprise five genetically linked staphylococcal enterotoxins, SEG, SEI, SElM, SElN, and SElO and two pseudotoxins which constitute an operon present in up to 80% of Staphylococcus aureus isolates. A preparation containing these proteins was recently used to treat advanced lung cancer with pleural effusion. We investigated the hypothesis that egcSEs induce nitrous oxide (NO) and associated cytokine production and that these agents may be involved in tumoricidal effects against a broad panel of clinically relevant human tumor cells. Preliminary studies showed that egcSEs and SEA activated T cells (range: 11-25%) in a concentration dependent manner. Peripheral blood mononuclear cells (PBMCs) stimulated with equimolar quantities of egcSEs expressed NO synthase and generated robust levels of nitrite (range: 200-250 μM), a breakdown product of NO; this reaction was inhibited by NG-monomethyl-L-arginine (L-NMMA) (0.3 mM), an NO synthase antagonist. Cell free supernatants (CSFs) of all egcSE-stimulated PBMCs were also equally effective in inducing concentration dependent tumor cell apoptosis in a broad panel of human tumor cells. The latter effect was due in part to the generation of NO and TNF-α since it was significantly abolished by L-NMMA, anti-TNF-α antibodies, respectively, and a combination thereof. A hierarchy of tumor cell sensitivity to these CFSs was as follows: lung carcinoma > osteogenic sarcoma > melanoma > breast carcinoma >neuroblastoma. Notably, SEG induced robust activation of NO/TNFα-dependent tumor cell apoptosis comparable to the other egcSEs and SEA despite TNF-α and IFN-γ levels that were 2 and 8 fold lower, respectively, than the other egcSEs and SEA. Thus, egcSEs produced by S. aureus induce NO synthase and the increased NO formation together with TNF-α appear to contribute to egcSE-mediated apoptosis against a broad panel of human tumor cells
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