Highly syntenic and yet divergent: a tale of two Theilerias

The published genomic sequences of the two major host-transforming Theileria species of cattle represent a rich resource of information that has allowed novel bioinformatic and experimental studies into these important apicomplexan parasites. Since their publication in 2005, the genomes of T. annulata and T. parva have been utilised for a diverse range of applications, ranging from candidate antigen discovery to the identification of genetic markers for population analysis. This has led to advancements in the quest for a sub-unit vaccine, while providing a greater understanding of variation among parasite populations in the field. The unique ability of these Theileria species to induce host cell transformation is the subject of considerable scientific interest and the availability of full genomic sequences has provided new insights into this area of research. This article reviews the data underlying published comparative analyses, focussing on the general features of gene expression, the major Tpr/Tar multi-copy gene family and a re-examination of the predicted macroschizont secretome. Codon usage between the Theileria species is reviewed in detail, as this underpins ongoing comparative studies investigating selection at the intra- and inter-species level. The TashAT/TpshAT family of genes, conserved between T. annulata and T. parva, encodes products targeted to the host nucleus and has been implicated in contributing to the transformed bovine phenotype. Species-specific expansion and diversification at this critical locus is discussed with reference to the availability, in the near future, of genomic datasets which are based on non-transforming Theileria species

Autocatalytic plume pinch-off

A localized source of buoyancy flux in a non-reactive fluid medium creates a plume. The flux can be provided by either heat, a compositional difference between the fluid comprising the plume and its surroundings, or a combination of both. For autocatalytic plumes produced by the iodate-arsenous acid reaction, however, buoyancy is produced along the entire reacting interface between the plume and its surroundings. Buoyancy production at the moving interface drives fluid motion, which in turn generates flow that advects the reaction front. As a consequence of this interplay between fluid flow and chemical reaction, autocatalytic plumes exhibit a rich dynamics during their ascent through the reactant medium. One of the more interesting dynamical features is the production of an accelerating vortical plume head that in certain cases pinches-off and detaches from the upwelling conduit. After pinch-off, a new plume head forms in the conduit below, and this can lead to multiple generations of plume heads for a single plume initiation. We investigated the pinch-off process using both experimentation and simulation. Experiments were performed using various concentrations of glycerol, in which it was found that repeated pinch-off occurs exclusively in a specific concentration range. Autocatalytic plume simulations revealed that pinch-off is triggered by the appearance of accelerating flow in the plume conduit.Comment: 10 figures. Accepted for publication in Phys Rev E. See also http://www.physics.utoronto.ca/nonlinear/papers_chemwave.htm

Hepatic Focal Nodular Hyperplasia: A Benign Incidentaloma or a Marker of Serious Hepatic Disease?

Amongst 17 patients with hepatic focal nodular hyperplasia (FNH) encountered at Westmead Hospital between 1981 and 1990, FNH was found in association with hepatocellular carcinoma (HCC) in three (3/ 17), one male and two females, one of whom also had peliosis and an hepatic adenoma. FNH was also found in association with other conditions which may affect hepatic function, structure or circulation, including chronic obstructive airways disease (2), congestive cardiomyopathy (1), chronic active hepatitis (1), granulomatous hepatitis (1), coeliac artery stenosis (1) and metastatic malignant melanoma (1). This report, derived from our experience with FNH over 10 years draws attention to a possible link between FNH, hepatic malignancy and conditions which may disturb the hepatic circulation. We suggest that patients with FNH should be investigated thoroughly and an aggressive management policy should be adopted

Development of a paediatric triage tool to aid clinical prioritisation and delivery of pharmaceutical care

[Abstract unavailable

A study of top polarization in single-top production at the LHC

This paper complements the study of single top production at the LHC aiming to estimate the sensitivity of different observables to the magnitude of the effective couplings. In a previous paper the dominant $W$-gluon fusion mechanism was considered, while here we extend the analysis to the subdominant (10% with our set of experimental cuts) s-channel process. In order to distinguish left from right effective couplings it is required to consider polarized cross-sections and/or include $m_b$ effects. The spin of the top is accessible only indirectly by measuring the angular distribution of its decay products. We show that the presence of effective right-handed couplings implies necessarily that the top is not in a pure spin state. We discuss to what extent quantum interference terms can be neglected in the measurement and therefore simply multiply production and decay probabilities clasically. The coarsening involved in the measurement process makes this possible. We determine for each process the optimal spin basis where theoretical errors are minimized and, finally, discuss the sensitivity in the s-channel to the effective right-handed coupling. The results presented here are all analytical and include $m_b$ corrections. They are derived within the narrow width approximation for the top.Comment: 30 pages, 14 figure

Analysis of a new genetic cross between two East African Trypanosoma brucei clones

Two clones of East African Trypanosoma brucei, with distinct homozygous isoenzyme patterns for one of three enzymes examined, were cotransmitted through the tsetse fly vector Glossina morsitans centralis. Flies with mature infections were individually fed on mice and the subsequent bloodstream form populations analysed for the presence of hybrid trypanosomes by isoenzyme analysis. Several combinations have previously been detected using this approach (Schweizer, Tait & Jenni, 1988; Sternberg et al. 1989). Four clones were isolated from one of the hybrid-containing populations. They showed a hybrid phenotype, as would be expected for the F1 progeny in a diploid Mendelian system. The analysis of the progeny clones, using two gene probes which detect restriction fragment length polymorphisms between the two parental stocks, showed that alleles had segregated at each locus and given rise to three different non-parental combinations of alleles in the hybrid progeny. Characterization of the hybrid progeny clones by PFGE (pulsed field gradient gel electrophoresis) revealed that all progeny clones were recombinant for the intermediate size chromosomes. From the analysis of the segregation of the larger chromosomes, marked by P0K (phosphoglycerate kinase) and CP (cysteine protease) gene probes, it was inferred that the progeny clones did not result from a direct fusion of diploid cells. Results with the PGK probe fit into a classical system with meiosis and subsequent fusion of the nuclei to form diploid progeny. On the other hand, blots with the CP probe as well as some of the ethidium bromide stained PFGE gels revealed the existence of non-parental size chromosomes in some of the hybrid progeny. This phenomenon was observed previously (Gibson, 1989) and further investigation is required to elucidate the mechanis

New Supersymmetric Contributions to t−>cVt->cV

We calculate the electroweak-like one-loop supersymmetric contributions to the rare and flavor-violating decay of the top quark into a charm quark and a gauge boson: $t->c V$, with $V=\gamma,Z,g$. We consider loops of both charginos and down-like squarks (where we identify and correct an error in the literature) and neutralinos and up-like squarks (which have not been calculated before). We also account for left-right and generational squark mixing. Our numerical results indicate that supersymmetric contributions to $t->cV$ can be upto 5 orders of magnitude larger than their Standard Model counterparts. However, they still fall short of the sensitivity expected at the next-generation top-quark factories.Comment: 13 pages, LaTex, 1 figure included. Final version to appear in Physical Review D. Chargino contribution dealt with in greater detail. Minor revisions in tex

Flavor changing scalar couplings and tγ(Z)t\gamma(Z) production at hadron colliders

We calculate the contributions of the flavor changing scalar ($FCS$) couplings arised from topcolor-assisted technicolor ($TC2$) models at tree-level to the $t\gamma$ and $tZ$ production at the Tevatron and $LHC$ experiments. We find that the production cross sections are very small at the Tevatron with $\sqrt{s}=1.96TeV$, which is smaller than 5 fb in most of the parameter space of $TC2$ models. However, the virtual effects of the $FCS$ couplings on the $t\gamma(Z)$ production can be easily detected at the $LHC$ with $\sqrt{s}=14TeV$ via the final state $\gamma l\bar{\nu}b$ ($l^{+}l^{-}l\bar{\nu}b$).Comment: 10 pages,5 figure

Frequency-wavenumber spectrum of the free surface of shallow turbulent flows over a rough boundary

Data on the frequency-wavenumber spectra and dispersion relation of the dynamic water surface in an open channel flow are very scarce. In this work, new data on the frequency-wavenumber spectra were obtained in a rectangular laboratory flume with a rough bottom boundary, over a range of subcritical Froude numbers. These data were used to study the dispersion relation of the surface waves in such shallow turbulent water flows. The results show a complex pattern of surface waves, with a range of scales and velocities. When the mean surface velocity is faster than the minimum phase velocity of gravity-capillary waves, the wave pattern is dominated by stationary waves that interact with the static rough bed. There is a coherent three-dimensional pattern of radially propagating waves with the wavelength approximately equal to the wavelength of the stationary waves. Alongside these waves, there are freely propagating gravity-capillary waves that propagate mainly parallel to the mean flow, both upstream and downstream. In the flow conditions where the mean surface velocity is slower than the minimum phase velocity of gravity-capillary waves, patterns of non-dispersive waves are observed. It is suggested that these waves are forced by turbulence. The results demonstrate that the free surface carries information about the underlying turbulent flow. The knowledge obtained in this study paves the way for the development of novel airborne methods of non-invasive flow monitoring