A classical bounce: constraints and consequences

We perform a detailed investigation of the simplest possible cosmological model in which a bounce can occur, namely that where the dynamics is led by a simple massive scalar field in a general self-interacting potential and a background spacetime with positively curved spatial sections. By means of a phase space analysis, we give the conditions under which an initially contracting phase can be followed by a bounce and an inflationary phase lasting long enough (i.e., at least 60-70 e-folds) to suppress spatial curvature in today's observable universe. We find that, quite generically, this realization requires some amount of fine-tuning of the initial conditions. We study the effect of this background evolution on scalar perturbations by propagating an initial power-law power spectrum through the contracting phase, the bounce and the inflationary phase. We find that it is drastically modified, both spectrally (k-mode mixing) and in amplitude. It also acquires, at leading order, an oscillatory component, which, once evolved through the radiation and matter dominated eras, happens to be compatible with the WMAP data.Comment: Updated references, improved figure resolutio

Confined turbulent swirling recirculating flow predictions

The capability and the accuracy of the STARPIC computer code in predicting confined turbulent swirling recirculating flows is presented. Inlet flow boundary conditions were demonstrated to be extremely important in simulating a flowfield via numerical calculations. The degree of swirl strength and expansion ratio have strong effects on the characteristics of swirling flow. In a nonswirling flow, a large corner recirculation zone exists in the flowfield with an expansion ratio greater than one. However, as the degree of inlet swirl increases, the size of this zone decreases and a central recirculation zone appears near the inlet. Generally, the size of the central zone increased with swirl strength and expansion ratio. Neither the standard k-epsilon turbulence mode nor its previous extensions show effective capability for predicting confined turbulent swirling recirculating flows. However, either reduced optimum values of three parameters in the mode or the empirical C sub mu formulation obtained via careful analysis of available turbulence measurements, can provide more acceptable accuracy in the prediction of these swirling flows

Rapidly Converging Activity Expansions For Representing The Thermodynamic Properties Of Fluid Systems: Gases, Non-Electrolyte Solutions, Weak And Strong Electrolyte Solutions

For dilute gases and non-electrolyte solutions in the McMillan–Mayer standard state, an activity expansion due to Mayer has great advantages over the normal concentration expansion (virial equation) for strongly associating species. For weakly interacting systems, both approaches are suitable. The activity expansion eliminates the need to differentiate between strong “chemical” interactions and weak “physical” interactions since the same equation is used in each situation. The equation has been modified to represent electrolyte solutions in the McMillan–Mayer standard state by requiring that it be consistent with the Debye–Hückel and higher order limiting laws for strong electrolytes and that it be equivalent to a chemical association model for weak electrolytes. The result is a compact equation which contains no arbitrary ion-size parameters and which does not require the classification of an electrolyte as strong or weak. For 2:2 electrolytes, the equation gives a very good fit to the anomalous low concentration region. For practical thermodynamic calculations, similar equations for molal activity coefficients are proposed; good fits of the data are obtained

Turbulence characteristics of swirling flowfields

The time mean and turbulence properties of a confined swirling jet using the six orientation, single hot wire technique were obtained. The effect of swirl on a confined, expanding jet is to reduce the size of the corner recirculation zone and generate a central recirculation zone followed by a precessing vortex core. The effect of introducing a contraction nozzle of area ratio four, located two test section diameters downstream of the inlet, is to dramatically reduce the size and shape of the central recirculation zone for the swirling flows considered. The shear stresses are found to increase by an order of magnitude in the region of the contraction nozzle because of large radial gradients of axial velocity. Reduction of the expansion ratio to D/o = 1 causes the time mean flow field to be homogeneous throughout the entire test section with the tangential velocity dominating in the swirling cases. No recirculation zones were observed for these particular flows. Turbulence levels and dissipation rates were found to be low except in the entrance regions and in areas of acceleration in the swirling flow cases

Comparison of dimethyl sulfoxide treated highly conductive poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) electrodes for use in indium tin oxide-free organic electronic photovoltaic devices

Indium tin oxide (ITO)-free organic photovoltaic (OPV) devices were fabricated using highly conductive poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) (PEDOT:PSS) as the transparent conductive electrode (TCE). The intrinsic conductivity of the PEDOT:PSS films was improved by two different dimethyl sulfoxide (DMSO) treatments – (i) DMSO was added directly to the PEDOT:PSS solution (PEDOT:PSSADD) and (ii) a pre-formed PEDOT:PSS film was immersed in DMSO (PEDOT:PSSIMM). X-ray photoelectron spectroscopy (XPS) and conductive atomic force microscopy (CAFM) studies showed a large amount of PSS was removed from the PEDOT:PSSIMM electrode surface. OPV devices based on a poly(3-hexylthiophene):[6,6]-phenyl-C61-butyric acid methyl ester (P3HT:PCBM) bulk hetrojunction showed that the PEDOT:PSSIMM electrode out-performed the PEDOT:PSSADD electrode, primarily due to an increase in short circuit current density from 6.62 mA cm−2 to 7.15 mA cm−2. The results highlight the importance of optimising the treatment of PEDOT:PSS electrodes and demonstrate their potential as an alternative TCE for rapid processing and low-cost OPV and other organic electronic devices

Higher order Schrodinger and Hartree-Fock equations

The domain of validity of the higher-order Schrodinger equations is analyzed for harmonic-oscillator and Coulomb potentials as typical examples. Then the Cauchy theory for higher-order Hartree-Fock equations with bounded and Coulomb potentials is developed. Finally, the existence of associated ground states for the odd-order equations is proved. This renders these quantum equations relevant for physics.Comment: 19 pages, to appear in J. Math. Phy

Real-time detection of cruciform extrusion by single-molecule DNA nanomanipulation

During cruciform extrusion, a DNA inverted repeat unwinds and forms a four-way junction in which two of the branches consist of hairpin structures obtained by self-pairing of the inverted repeats. Here, we use single-molecule DNA nanomanipulation to monitor in real-time cruciform extrusion and rewinding. This allows us to determine the size of the cruciform to nearly base pair accuracy and its kinetics with second-scale time resolution. We present data obtained with two different inverted repeats, one perfect and one imperfect, and extend single-molecule force spectroscopy to measure the torque dependence of cruciform extrusion and rewinding kinetics. Using mutational analysis and a simple two-state model, we find that in the transition state intermediate only the B-DNA located between the inverted repeats (and corresponding to the unpaired apical loop) is unwound, implying that initial stabilization of the four-way (or Holliday) junction is rate-limiting. We thus find that cruciform extrusion is kinetically regulated by features of the hairpin loop, while rewinding is kinetically regulated by features of the stem. These results provide mechanistic insight into cruciform extrusion and help understand the structural features that determine the relative stability of the cruciform and B-form states

The effects of acoustic vibration on fibroblast cell migration

Cells are known to interact and respond to external mechanical cues and recent work has 9 shown that application of mechanical stimulation, delivered via acoustic vibration, can be 10 used to control complex cell behaviours. Fibroblast cells are known to respond to physical 11 cues generated in the extracellular matrix and it is thought that such cues are important 12 regulators of the wound healing process. Many conditions are associated with poor wound 13 healing, so there is need for treatments/interventions, which can help accelerate the wound 14 healing process. The primary aim of this research was to investigate the effects of mechanical 15 stimulation upon the migratory and morphological properties of two different fibroblast cells 16 namely; human lung fibroblast cells (LL24) and subcutaneous areolar/adipose mouse 17 fibroblast cells (L929). Using a speaker-based system, the effects of mechanical stimulation 18 (0-1600Hz for 5 minutes) on the mean cell migration distance (μm) and actin organisation 19 was investigated. The results show that 100Hz acoustic vibration enhanced cell migration for 20 both cell lines whereas acoustic vibration above 100Hz acoustic vibration was found to 21 decrease cell migration in a frequency dependent manner. Mechanical stimulation was also 22 found to promote changes to the morphology of both cell lines, particularly the formation of 23 lamellipodia and filopodia. Overall lamellipodia was the most prominent actin structure 24 displayed by the lung cell (LL24), whereas filopodia was the most prominent actin feature 25 displayed by the fibroblast derived from subcutaneous areolar/adipose tissue. Mechanical 26 stimulation at all the frequencies used here was found not to affect cell viability. These results 27 suggest that low-frequency acoustic vibration may be used as a tool to manipulate the 28 mechano-sensitivity of cells to manipulate cell migration and which may be used to aid 29 wound repair

DNA cruciform arms nucleate through a correlated but non-synchronous cooperative mechanism

Inverted repeat (IR) sequences in DNA can form non-canonical cruciform structures to relieve torsional stress. We use Monte Carlo simulations of a recently developed coarse-grained model of DNA to demonstrate that the nucleation of a cruciform can proceed through a cooperative mechanism. Firstly, a twist-induced denaturation bubble must diffuse so that its midpoint is near the centre of symmetry of the IR sequence. Secondly, bubble fluctuations must be large enough to allow one of the arms to form a small number of hairpin bonds. Once the first arm is partially formed, the second arm can rapidly grow to a similar size. Because bubbles can twist back on themselves, they need considerably fewer bases to resolve torsional stress than the final cruciform state does. The initially stabilised cruciform therefore continues to grow, which typically proceeds synchronously, reminiscent of the S-type mechanism of cruciform formation. By using umbrella sampling techniques we calculate, for different temperatures and superhelical densities, the free energy as a function of the number of bonds in each cruciform along the correlated but non-synchronous nucleation pathways we observed in direct simulations.Comment: 12 pages main paper + 11 pages supplementary dat

Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes.

Sedentary endoparasitic nematodes are obligate biotrophs that modify host root tissues, using a suite of effector proteins to create and maintain a feeding site that is their sole source of nutrition. Using assumptions about the characteristics of genes involved in plant-nematode biotrophic interactions to inform the identification strategy, we provide a description and characterisation of a novel group of hyper-variable extracellular effectors termed HYP, from the potato cyst nematode Globodera pallida. HYP effectors comprise a large gene family, with a modular structure, and have unparalleled diversity between individuals of the same population: no two nematodes tested had the same genetic complement of HYP effectors. Individuals vary in the number, size, and type of effector subfamilies. HYP effectors are expressed throughout the biotrophic stages in large secretory cells associated with the amphids of parasitic stage nematodes as confirmed by in situ hybridisation. The encoded proteins are secreted into the host roots where they are detectable by immunochemistry in the apoplasm, between the anterior end of the nematode and the feeding site. We have identified HYP effectors in three genera of plant parasitic nematodes capable of infecting a broad range of mono- and dicotyledon crop species. In planta RNAi targeted to all members of the effector family causes a reduction in successful parasitism