621 research outputs found

    Comparative genomics of isolates of a pseudomonas aeruginosa epidemic strain associated with chronic lung infections of cystic fibrosis patients

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    Pseudomonas aeruginosa is the main cause of fatal chronic lung infections among individuals suffering from cystic fibrosis (CF). During the past 15 years, particularly aggressive strains transmitted among CF patients have been identified, initially in Europe and more recently in Canada. The aim of this study was to generate high-quality genome sequences for 7 isolates of the Liverpool epidemic strain (LES) from the United Kingdom and Canada representing different virulence characteristics in order to: (1) associate comparative genomics results with virulence factor variability and (2) identify genomic and/or phenotypic divergence between the two geographical locations. We performed phenotypic characterization of pyoverdine, pyocyanin, motility, biofilm formation, and proteolytic activity. We also assessed the degree of virulence using the Dictyostelium discoideum amoeba model. Comparative genomics analysis revealed at least one large deletion (40-50 kb) in 6 out of the 7 isolates compared to the reference genome of LESB58. These deletions correspond to prophages, which are known to increase the competitiveness of LESB58 in chronic lung infection. We also identified 308 non-synonymous polymorphisms, of which 28 were associated with virulence determinants and 52 with regulatory proteins. At the phenotypic level, isolates showed extensive variability in production of pyocyanin, pyoverdine, proteases and biofilm as well as in swimming motility, while being predominantly avirulent in the amoeba model. Isolates from the two continents were phylogenetically and phenotypically undistinguishable. Most regulatory mutations were isolate-specific and 29% of them were predicted to have high functional impact. Therefore, polymorphism in regulatory genes is likely to be an important basis for phenotypic diversity among LES isolates, which in turn might contribute to this strain's adaptability to varying conditions in the CF lung

    Coaxial multi-mode cavities for fundamental SRF research in an unprecedented parameter space

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    Recent developments in superconducting radio-frequency (SRF) research have focused primarily on high frequency elliptical cavities for electron accelerators. Advances have been made in both reducing RF surface resistance and pushing the readily achievable accelerating gradient by using novel SRF cavity treatments including surface processing, custom heat treatments, and flux expulsion. Despite the global demand for SRF based hadron accelerators, the advancement of TEM mode cavities has lagged behind. To address this, two purpose-built research cavities, one quarter-wave and one half-wave resonator, have been designed and built to allow characterization of TEM-mode cavities with standard and novel surface treatments. The cavities are intended as the TEM mode equivalent to the 1.3GHz single cell cavity, which is the essential tool for high frequency cavity research. Given their coaxial structure, the cavities allow testing at the fundamental mode and higher harmonics, giving unique insight into the role of RF frequency on fundamental loss mechanisms from intrinsic and extrinsic sources. In this paper, the cavities and testing infrastructure are described and the first performance measurements of both cavities are presented

    Quality Legume-Based Forage Systems for Contrasting Environments: COST Action 852

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    Agricultural systems that reduce environmental degradation, sustain agricultural productivity and economic viability, maintain stable rural communities, enhance the quality of life and respond to increasing demand for livestock products are promoted in developed countries. Though major challenges exist, forage legumes, adapted to a wide range of soil types, climatic conditions and management systems, will become increasingly important components of sustainable agricultural production systems in Europe. Temporal and spatial variation in legume performance often occurs. Compared to pure grass systems, legume-based systems may lead to increased N losses. To what extent ruminants can use the protein from forage legumes, and whether there are differences among species and cultivars are unknown. To improve reliability and the range of forage legumes, we must understand the constraints of environment, the reasons for divergence between species potential and actual performance and the most efficient way to use the herbage. The COST Action 852 - Quality legume-based forage systems for contrasting environments was set up to help resolve some of these questions

    Counting Roman chickens: multidisciplinary approaches to human-chicken interactions in Roman Britain.

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    This paper discusses some of the approaches and results from two multi-disciplinary projects. The first is the AHRC-funded ‘Cultural and Scientific Perceptions of Human-Chicken Interactions’ Project. This is investigating the history of the exploitation of chickens in Europe. The second is the Leverhulme Trust-funded ‘Rural Settlement of Roman Britain’ Project, which has collated evidence from excavation reports from thousands of sites. This paper updates the evidence for the exploitation of chickens in Roman Britain, showing that there were significant variations in the abundance of chicken bones found on different types of settlement. There was also a modest increase in their abundance during the Roman period suggesting chickens became slightly more frequent contributors to the diet, albeit still only a rare commodity. However, they continued to be frequently represented in graves, shrines and other ritual deposits. The paper also discusses evidence of egg production and avian osteopetrosis, demonstrating that when traditional zooarchaeological research is integrated with scientific analyses, a deeper understanding of past human diet can be acquired

    Hobson’s choice? Constraints on accessing spaces of creative production

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    Successful creative production is often documented to occur in urban areas that are more likely to be diverse, a source of human capital and the site of dense interactions. These accounts chart how, historically, creative industries have clustered in areas where space was once cheap in the city centre fringe and inner city areas, often leading to the development of a creative milieu, and thereby stimulating further creative production. Historical accounts of the development of creative areas demonstrate the crucial role of accessible low-cost business premises. This article reports on the findings of a case study that investigated the location decisions of firms in selected creative industry sectors in Greater Manchester. The study found that, while creative activity remains highly concentrated in the city centre, creative space there is being squeezed and some creative production is decentralizing in order to access cheaper premises. The article argues that the location choices of creative industry firms are being constrained by the extensive city centre regeneration, with the most vulnerable firms, notably the smallest and youngest, facing a Hobson’s choice of being able to access low-cost premises only in the periphery. This disrupts the delicate balance needed to sustain production and begs the broader question as to how the creative economy fits into the existing urban fabric, alongside the competing demands placed on space within a transforming industrial conurbation
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