1,232 research outputs found
Progress in Multi-Disciplinary Data Life Cycle Management
Modern science is most often driven by data. Improvements in state-of-the-art technologies and methods in many scientific disciplines lead not only to increasing data rates, but also to the need to improve or even completely overhaul their data life cycle management.
Communities usually face two kinds of challenges: generic ones like federated authorization and authentication infrastructures and data preservation, and ones that are specific to their community and their respective data life cycle. In practice, the specific requirements often hinder the use of generic tools and methods.
The German Helmholtz Association project "Large-Scale Data Management and Analysis" (LSDMA) addresses both challenges: its five Data Life Cycle Labs (DLCLs) closely collaborate with communities in joint research and development to optimize the communities data life cycle management, while its Data Services Integration Team (DSIT) provides generic data tools and services.
We present most recent developments and results from the DLCLs covering communities ranging from heavy ion physics and photon science to high-throughput microscopy, and from DSIT
Competitiveness and communication for effective inoculation byRhizobium, Bradyrhizobium and vesicular-arbuscular mycorrhiza fungi
After a short summary on the ecology and rhizosphere biology of symbiotic bacteria and vesicular-arbuscular (VA) mycorrhiza fungi and their application as microbial inocula, results on competitiveness and communication are summarized. Stress factors such as high temperature, low soil pH, aluminium concentrations and phytoalexins produced by the host plants were studied withRhizobium leguminosarum bv.phaseoli andRhizobium tropici onPhaseolus beans. Quantitative data for competitiveness were obtained by usinggus + (glucoronidase) labelled strains, which produce blue-coloured nodules. ForPhaseolus-nodulating rhizobia, a group specific DNA probe was also developed, which did not hybridize with more than 20 other common soil and rhizosphere bacteria. Results from several laboratories contributing to knowledge of signal exchange and communication in theRhizobium/Bradyrhizobium legume system are summarized in a new scheme, including also defense reactions at the early stages of legume nodule initiation. Stimulating effects of flavonoids on germination and growth of VA mycorrhiza fungi were also found. A constitutive antifungal compound in pea roots, -isoxazolinonyl-alanine, was characterized
Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada
This report summarizes the events of the 1st International Functional Metagenomics Workshop. The workshop was held on May 7 and 8 in St. Jacobs, Ontario, Canada and was focused on building a core international functional metagenomics community, exploring strategic research areas, and identifying opportunities for future collaboration and funding. The workshop was initiated by researchers at the University of Waterloo with support from the Ontario Genomics Institute (OGI), Natural Sciences and Engineering Research Council of Canada (NSERC) and the University of Waterloo
Magnetic susceptibility of EuTe/PbTe Heisenberg superlattices: experimental and theoretical studies
We report results on the temperature dependence of the susceptibilities of a
set of MBE-grown short-period EuTe/PbTe antiferromagnetic superlattices having
different EuTe layer thicknesses. In-plane and orthogonal susceptibilities have
been measured and display a strong anisotropy at low temperature, confirming
the occurrence of a magnetic phase transition in the thicker samples, as seen
also in neutron diffraction studies. We suggest that dipolar interactions
stabilize antiferromagnetic long-range order in an otherwise isotropic system
and we present numerical and analytical results for the low-temperature
orthogonal susceptibility.Comment: 30 pages, 8 ps figures, RevTe
Proceedings - U.S.A Agroecology Summit 2023
This docket is a memory of the meeting held in Kansas City from May 22-25 called the 2023 USA Agroecology Summit and contains all the documents generated before, during, and after the meeting
An excess power statistic for detection of burst sources of gravitational radiation
We examine the properties of an excess power method to detect gravitational
waves in interferometric detector data. This method is designed to detect
short-duration (< 0.5 s) burst signals of unknown waveform, such as those from
supernovae or black hole mergers. If only the bursts' duration and frequency
band are known, the method is an optimal detection strategy in both Bayesian
and frequentist senses. It consists of summing the data power over the known
time interval and frequency band of the burst. If the detector noise is
stationary and Gaussian, this sum is distributed as a chi-squared (non-central
chi-squared) deviate in the absence (presence) of a signal. One can use these
distributions to compute frequentist detection thresholds for the measured
power. We derive the method from Bayesian analyses and show how to compute
Bayesian thresholds. More generically, when only upper and/or lower bounds on
the bursts duration and frequency band are known, one must search for excess
power in all concordant durations and bands. Two search schemes are presented
and their computational efficiencies are compared. We find that given
reasonable constraints on the effective duration and bandwidth of signals, the
excess power search can be performed on a single workstation. Furthermore, the
method can be almost as efficient as matched filtering when a large template
bank is required. Finally, we derive generalizations of the method to a network
of several interferometers under the assumption of Gaussian noise.Comment: 22 pages, 6 figure
Joint association of polymorphism of the FGFR4 gene and mutation TP53 gene with bladder cancer prognosis
The impact of the fibroblast growth factor receptor 4 (FGFR4) Gly388Arg polymorphism on bladder cancer is unknown. We found no clear correlations between the FGFR4 genotype and risk of bladder cancer or pathological parameters. Neither the polymorphism nor TP53 mutation status was an independent predictor of prognosis, but they might act jointly on the disease-specific survival of patients
A strategy to discover new organizers identifies a putative heart organizer
Organizers are regions of the embryo that can both induce new fates and impart pattern on other regions. So far, surprisingly few organizers have been discovered, considering the number of patterned tissue types generated during development. This may be because their discovery has relied on transplantation and ablation experiments. Here we describe a new approach, using chick embryos, to discover organizers based on a common gene expression signature, and use it to uncover the anterior intestinal portal (AIP) endoderm as a putative heart organizer. We show that the AIP can induce cardiac identity from non-cardiac mesoderm and that it can pattern this by specifying ventricular and suppressing atrial regional identity. We also uncover some of the signals responsible. The method holds promise as a tool to discover other novel organizers acting during development
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