Fact sheet: Field considerations for measuring evapotranspiration with the Eddy Covariance Method.

In semi-arid ponderosa pine forests of the southwestern US, up to 90% of the annual water budget is re-turned to the atmosphere through evapotranspiration (ET). Accurate measurements of this component of the water budget are, therefore, critical to assess hydrological responses to planned forest restoration. The eddy covariance (EC) method is an atmospheric measurement technique that yields accurate ET measurements. The EC method calculates vertical turbulent fluxes within an atmospheric boundary layer over natural ecosystems and agricultural systems to determine gas exchange rates (e.g., water vapor concentration, carbon dioxide (CO2) concentration) (Burba 2013). Both natural and human-mediated processes affect forest gas exchange. Recent studies of both wildfire and forest restoration treatments in stands of ponderosa pine show a reduction of ET compared to an undisturbed forest site (Dore et al. 2010). Application of EC to investigate CO2 and water fluxes in ponderosa pine forest improves understanding of CO2 and water flux exchange patterns. This fact sheet describes installation of an EC system, including flux tower placement requirements and maintenance of scientific instruments

Sensitivity of Evapotranspiration Models to Onsite and Offsite Meteorological Data for a Ponderosa Pine Forest

Evapotranspiration (ET) is a major component of the water budget in most forests, in many cases exceeding 70% of annual precipitation. Due to limitations in time and resources, input data necessary to model ET are not always available for a study site, but offsite data from meteorological networks may be a suitable substitute. In this study, we evaluated three models for estimating ET, Priestly-Taylor (P-T), Shuttleworth-Wallace (S-W), and Penman-Monteith with dynamic stomatal resistance (P-M-d), in a ponderosa pine (Pinus ponderosa) forest in northern Arizona where eddy covariance data exist for comparison. We tested the sensitivity of the models to the use of offsite meteorological data from a weather station and offsite soil moisture data from two snow monitoring sites in the SNOTEL network. Onsite data are required for accurate ET estimation with the P-M-d model because of its complexity. Acceptable accuracy in ET estimation required onsite net radiation data for the P-T model and onsite vapor pressure deficit data for the S-W model; other input data can be obtained from nearby offsite weather stations. Errors in ET estimation produced by the use of offsite soil moisture data varied between two nearby SNOTEL sites. Recommendations about the use of offsite data are presented

Loss of Distal Femur Combined with Popliteal Artery Occlusion: Reconstructive Arthroplasty Using Modular Segmental Endoprosthesis: A Case Report

Severe injury to the knee and the surrounding area is frequently associated with injury to ligaments of the knee joint and structures in the popliteal fossa. This case involved a popliteal artery occlusion, severe bone loss of distal femur, loss of collateral ligaments, and extensor mechanism destruction of the knee. Initially, prompt recognition and correction of associated popliteal artery injury are important for good results after treatment. After successful revascularization, treatment for severe bone loss of distal femur and injury of the knee joint must be followed. We treated this case by delayed reconstruction using modular segmental endoprosthesis after revascularization of the popliteal artery. This allowed early ambulation. At 36 months after surgery, the patient had good circulation of the lower limb and was ambulating independently

An elementary stringy estimate of transport coefficients of large temperature QCD

Modeling QCD at large temperature with a simple holographic five dimensional theory encoding minimal breaking of conformality, allows for the calculation of all the transport coefficients, up to second order, in terms of a single parameter. In particular, the shear and bulk relaxation times are provided. The result follows by deforming the AdS background with a scalar dual to a marginally relevant operator, at leading order in the deformation parameter.Comment: 11 pages; v2: comments and references adde

Bulk spectral function sum rule in QCD-like theories with a holographic dual

We derive the sum rule for the spectral function of the stress-energy tensor in the bulk (uniform dilatation) channel in a general class of strongly coupled field theories. This class includes theories holographically dual to a theory of gravity coupled to a single scalar field, representing the operator of the scale anomaly. In the limit when the operator becomes marginal, the sum rule coincides with that in QCD. Using the holographic model, we verify explicitly the cancellation between large and small frequency contributions to the spectral integral required to satisfy the sum rule in such QCD-like theories.Comment: 16 pages, 2 figure

Lipidomic Analysis of Glioblastoma Multiforme Using Mass Spectrometry

Glioblastoma multiforme (GBM) is the most common and malignant form of primary brain tumors. It is highly invasive and current treatment options have not improved the survival rate over the past twenty years. Novel approaches and technologies from systems biology have the potential to identify biomarkers that could serve as new therapeutic targets for GBM. This study employed lipid profiling technology to investigate lipid biomarkers in ectopic and orthotopic human GBM xenograft models. Primary patient cell lines, GBM10 and GBM43, were injected into the flank and the right cerebral hemisphere of NOD/SCID mice. Tumors were harvested from the brain and flank and proteins, metabolites, and lipids extracted from each sample. Reverse phase based high performance liquid chromatography coupled with Fourier transform ion cyclotron resonance mass spectrometry (LC-FTMS) was used to analyze the lipid profiles of tumor samples. Statistical and clustering analyses were performed to detect differences. Over 500 lipids were identified in each tumor model and lipids with the greatest fold effect in the comparison of ectopic versus orthotopic tumor models fell predominantly into four main classes of lipids: glycosphingolipids, glycerophoshpoethanolamines, triradylglycerols, and glycerophosphoserines. Lipidomic analysis revealed differences in glycosphingolipid and triglyceride profiles when the same tumor was propagated in the flank versus the brain. These results underscore the importance of the surrounding physiological environment on tumor development and are consistent with the hypothesis that specific classes of lipids are critical for GBM tumor growth in different anatomical sites

Lipidomic Analysis of Glioblastoma Multiforme Using Mass Spectrometry

Glioblastoma multiforme (GBM) is the most common and malignant form of primary brain tumors. It is highly invasive and current treatment options have not improved the survival rate over the past twenty years. Novel approaches and technologies from systems biology have the potential to identify biomarkers that could serve as new therapeutic targets for GBM. This study employed lipid profiling technology to investigate lipid biomarkers in ectopic and orthotopic human GBM xenograft models. Primary patient cell lines, GBM10 and GBM43, were injected into the flank and the right cerebral hemisphere of NOD/SCID mice. Tumors were harvested from the brain and flank and proteins, metabolites, and lipids extracted from each sample. Reverse phase based high performance liquid chromatography coupled with Fourier transform ion cyclotron resonance mass spectrometry (LC-FTMS) was used to analyze the lipid profiles of tumor samples. Statistical and clustering analyses were performed to detect differences. Over 500 lipids were identified in each tumor model and lipids with the greatest fold effect in the comparison of ectopic versus orthotopic tumor models fell predominantly into four main classes of lipids: glycosphingolipids, glycerophoshpoethanolamines, triradylglycerols, and glycerophosphoserines. Lipidomic analysis revealed differences in glycosphingolipid and triglyceride profiles when the same tumor was propagated in the flank versus the brain. These results underscore the importance of the surrounding physiological environment on tumor development and are consistent with the hypothesis that specific classes of lipids are critical for GBM tumor growth in different anatomical sites

Phylogeny and Taxonomy of the Round-Eared Sengis or Elephant-Shrews, Genus Macroscelides (Mammalia, Afrotheria, Macroscelidea)

The round-eared sengis or elephant-shrews (genus Macroscelides) exhibit striking pelage variation throughout their ranges. Over ten taxonomic names have been proposed to describe this variation, but currently only two taxa are recognized (M. proboscideus proboscideus and M. p. flavicaudatus). Here, we review the taxonomic history of Macroscelides, and we use data on the geographic distribution, morphology, and mitochondrial DNA sequence to evaluate the current taxonomy. Our data support only two taxa that correspond to the currently recognized subspecies M. p. proboscideus and M. p. flavicaudatus. Mitochondrial haplotypes of these two taxa are reciprocally monophyletic with over 13% uncorrected sequence divergence between them. PCA analysis of 14 morphological characters (mostly cranial) grouped the two taxa into non-overlapping clusters, and body mass alone is a relatively reliable distinguishing character throughout much of Macroscelides range. Although fieldworkers were unable to find sympatric populations, the two taxa were found within 50 km of each other, and genetic analysis showed no evidence of gene flow. Based upon corroborating genetic data, morphological data, near sympatry with no evidence of gene flow, and differences in habitat use, we elevate these two forms to full species

Hydrodynamics of fundamental matter

First and second order transport coefficients are calculated for the strongly coupled N=4 SYM plasma coupled to massless fundamental matter in the Veneziano limit. The results, including among others the value of the bulk viscosity and some relaxation times, are presented at next-to-leading order in the flavor contribution. The bulk viscosity is found to saturate Buchel's bound. This result is also captured by an effective single-scalar five-dimensional holographic dual in the Chamblin-Reall class and it is suggested to hold, in the limit of small deformations, for generic plasmas with gravity duals, whenever the leading conformality breaking effects are driven by marginally (ir)relevant operators. This proposal is then extended to other relations for hydrodynamic coefficients, which are conjectured to be universal for every non-conformal plasma with a dual Chamblin-Reall-like description. Our analysis extends to any strongly coupled gauge theory describing the low energy dynamics of Nc>>1 D3-branes at the tip of a generic Calabi-Yau cone. The fundamental fields are added by means of 1<<Nf<<Nc homogeneously smeared D7-branes.Comment: 24 pages. V2: Important improvements in the discussion of the results in section 1. References adde

Paxillin Dynamics Measured during Adhesion Assembly and Disassembly by Correlation Spectroscopy

Paxillin is an adaptor molecule involved in the assembly of focal adhesions. Using different fluorescence fluctuation approaches, we established that paxillin-EGFP is dynamic on many timescales within the cell, ranging from milliseconds to seconds. In the cytoplasmic regions, far from adhesions, paxillin is uniformly distributed and freely diffusing as a monomer, as determined by single-point fluctuation correlation spectroscopy and photon-counting histogram analysis. Near adhesions, paxillin dynamics are reduced drastically, presumably due to binding to protein partners within the adhesions. The photon-counting histogram analysis of the fluctuation amplitudes reveals that this binding equilibrium in new or assembling adhesions is due to paxillin monomers binding to quasi-immobile structures, whereas in disassembling adhesions or regions of adhesions, the equilibrium is due to exchange of large aggregates. Scanning fluctuation correlation spectroscopy and raster-scan image correlation spectroscopy analysis of laser confocal images show that the environments within adhesions are heterogeneous. Relatively large adhesions appear to slide transversally due to a treadmilling mechanism through the addition of monomeric paxillin at one side and removal of relatively large aggregates of proteins from the retracting edge. Total internal reflection microscopy performed with a fast acquisition EM-CCD camera completes the overall dynamic picture and adds details of the heterogeneous dynamics across single adhesions and simultaneous bursts of activity at many adhesions across the cell