Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield

Open Access Article; Published online: 17 Jan 2020Cassava is an important staple crop in sub‐Saharan Africa, due to its high productivity even on nutrient poor soils. The metabolic characteristics underlying this high productivity are poorly understood including the mode of photosynthesis, reasons for the high rate of photosynthesis, the extent of source/sink limitation, the impact of environment, and the extent of variation between cultivars. Six commercial African cassava cultivars were grown in a greenhouse in Erlangen, Germany, and in the field in Ibadan, Nigeria. Source leaves, sink leaves, stems and storage roots were harvested during storage root bulking and analyzed for sugars, organic acids, amino acids, phosphorylated intermediates, minerals, starch, protein, activities of enzymes in central metabolism and yield traits. High ratios of RuBisCO:phosphoenolpyruvate carboxylase activity support a C3 mode of photosynthesis. The high rate of photosynthesis is likely to be attributed to high activities of enzymes in the Calvin–Benson cycle and pathways for sucrose and starch synthesis. Nevertheless, source limitation is indicated because root yield traits correlated with metabolic traits in leaves rather than in the stem or storage roots. This situation was especially so in greenhouse‐grown plants, where irradiance will have been low. In the field, plants produced more storage roots. This was associated with higher AGPase activity and lower sucrose in the roots, indicating that feedforward loops enhanced sink capacity in the high light and low nitrogen environment in the field. Overall, these results indicated that carbon assimilation rate, the K battery, root starch synthesis, trehalose, and chlorogenic acid accumulation are potential target traits for genetic improvement

The Atp-dependent Rna Helicase Hrpb Plays An Important Role In Motility And Biofilm Formation In Xanthomonas Citri Subsp. Citri

Background: RNA helicases are enzymes that catalyze the separation of double-stranded RNA (dsRNA) using the free energy of ATP binding and hydrolysis. DEAD/DEAH families participate in many different aspects of RNA metabolism, including RNA synthesis, RNA folding, RNA-RNA interactions, RNA localization and RNA degradation. Several important bacterial DEAD/DEAH-box RNA helicases have been extensively studied. In this study, we characterize the ATP-dependent RNA helicase encoded by the hrpB (XAC0293) gene using deletion and genetic complementation assays. We provide insights into the function of the hrpB gene in Xanthomonas citri subsp. citri by investigating the roles of hrpB in biofilm formation on abiotic surfaces and host leaves, cell motility, host virulence of the citrus canker bacterium and growth in planta. Results: The hrpB gene is highly conserved in the sequenced strains of Xanthomonas. Mutation of the hrpB gene (Δ;hrpB) resulted in a significant reduction in biofilms on abiotic surfaces and host leaves. Δ;hrpB also exhibited increased cell dispersion on solid medium plates. Δ;hrpB showed reduced adhesion on biotic and abiotic surfaces and delayed development in disease symptoms when sprayed on susceptible citrus leaves. Quantitative reverse transcription-PCR assays indicated that deletion of hrpB reduced the expression of four type IV pili genes. The transcriptional start site of fimA (XAC3241) was determined using rapid amplification of 5′-cDNA Ends (5′RACE). Based on the results of fimA mRNA structure predictions, the fimA 5′ UTR may contain three different loops. HrpB may be involved in alterations to the structure of fimA mRNA that promote the stability of fimA RNA. Conclusions: Our data show that hrpB is involved in adherence of Xanthomonas citri subsp. citri to different surfaces. In addition, to the best of our knowledge, this is the first time that a DEAH RNA helicase has been implicated in the regulation of type IV pili in Xanthomonas. © 2016 Granato et al.16

Atividade alelopática de extratos brutos de três espécies de copaifera (leguminosae-caesalpinioideae)

For the past few years, special attention has been given to chemical composites involved in interaction between plants, especially when the potential of their use in weed management is known. The Amazon region with its enormous biodiversity and abundance of plant species may offer excellent opportunities for the discovery of innovative chemical molecules capable of being used in agriculture. Thus, in this paper, a comparative analysis was made between the potential allelopathic activity of three species of Copaifera, characterizing the variations of the intensity of the allelopathic effects of the donating species, plant fraction and chemical component polarity. Hexanic and ethanolic extracts, prepared at 1.0% from the leaves, branches and barks of Copaifera duckei, C. marti and C. reticulata, were tested on seed germination and development of Mimosa pudica and Senna obtusifolia weed roots. The results showed that the intensity of the effects varied according to the variables studied. The ethanolic extract of C. martii and C. reticulate leaves and barks showed high potential to inhibit seed germination, especially of M. pudica species. The species C. duckei showed low allelopathic inhibitory potential in the germination of two receptor species. Barks, branches and especially leaves of C. duckei presented more expressive inhibitory potential for root development. Polar, and especially non-polar chemical composites, are involved in the allelopathic activity of C. duckei. Differently for C. martii and C. reticulata, the polar composites are preferentially involved in the inhibitory activity evidenced by these species, especially those located on the leaves and barks. Comparatively, it was observed that the weed species receptor tended to show more sensitivity to the allelopathic effects of the extracts, especially in the germination bioassay

Isospin Effects in Nuclear Multifragmentation

We develop an improved Statistical Multifragmentation Model that provides the capability to calculate calorimetric and isotopic observables with precision. With this new model we examine the influence of nuclear isospin on the fragment elemental and isotopic distributions. We show that the proposed improvements on the model are essential for studying isospin effects in nuclear multifragmentation. In particular, these calculations show that accurate comparisons to experimental data require that the nuclear masses, free energies and secondary decay must be handled with higher precision than many current models accord.Comment: 46 pages, 16 figure

Overcoming seed dormancy in visgueiro-of-the-igapó (Parkia discolor)

This study aimed to evaluate the effects of pregerminative mechanical scarification treatments, as well as heat pre-treatments on the germination of visgueiro-of-the-igapó (Parkia discolor Spruce ex Benth.) seeds. The first experiment, with a completely randomized design and four repetitions, evaluated these pre-treatments: control (without pre-treatment); clipping at the distal portion; clipping at the proximal portion (hilum); clipping at the proximal and distal portions; scraping at the distal portion; scraping at the proximal portion; scraping at the proximal and distal portions; perforation of the husk with a soldering-iron; and perforation by pyrography. In the second experiment, with a completely randomized design and factorial 2 (heat: dry and wet) x 4 (temperature: 40ºC, 50ºC, 60ºC and 70ºC) x 5 (period of conditioning: 6, 16, 24, 30 and 48 hours), with three repetitions. The clipping or scraping of the seeds in the proximal portion and proximal and distal portions allowed faster imbibition of the seeds (143-163% in three days and half), and consequently, better germination (98-100% in four days), germination speed rate (1,351-1,460) and average time of germination (3 days). The pre-treatment with heat (wet and dry), under different temperatures and different conditioning periods did not overcome the dormancy of P. discolor seeds.O presente trabalho teve como objetivo avaliar os efeitos da aplicação de tratamentos pré-germinativos de escarificação mecânica, bem como pré-tratamentos com calor, sobre a germinação de sementes de visgueiro-do-igapó (Parkia discolor Spruce ex Benth.). No primeiro experimento, sob delineamento inteiramente ao acaso, com quatro repetições, foram avaliados os pré-tratamentostestemunha (sem pré-tratamento); desponte no lado distal; desponte no lado proximal; desponte nos lados distal e proximal; lixamento no lado distal; lixamento no lado proximal; lixamento nos lados distal e proximal; perfuração do tegumento com ferro-de-solda; e perfuração com pirógrafo. No segundo experimento, foi adotado o delineamento inteiramente casualizado, em esquema fatorial 2 (calorseco e úmido) x 4 (temperatura40ºC, 50ºC, 60ºC e 70ºC) x 5 (período de condicionamento6, 16, 24, 30 e 48 horas), com três repetições. O desponte ou lixamento das sementes na porção proximal e porções proximal e distal possibilitaram uma embebição mais rápida (143-163%, aos três dias e meio) e, conseqüentemente, melhores resultados de germinação (98-100%, aos quatro dias), do índice de velocidade de germinação (1,351-1,460) e do tempo médio de germinação (3 dias). Os pré-tratamentos com calor (úmido e seco), sob diferentes temperaturas, e por vários períodos de condicionamento não superaram a dormência de sementes de P. discolor