Hydrological niches in terrestrial plant communities: a review

1. Despite the fundamental significance of water to plants and the persisting question of how competing species coexist, this is the first review of hydrological niches. We define hydrological niche segregation (HNS) as: (i) partitioning of space on fine-scale soil-moisture gradients, (ii) partitioning of water as a resource, and/or (iii) partitioning of recruitment opportunities among years caused by species specializing on particular patterns of temporal variance of water supply (the storage effect). 2. We propose that there are three types of constraint that lead to the trade-offs that underlie HNS. (i) An edaphic constraint creates a trade-off between the supply to roots of O2 on the one hand vs. water and nutrients on the other. (ii) A biophysical constraint governs gas exchange by leaves, leading to a trade-off between CO2 acquisition vs. water loss. (iii) A structural constraint arising from the physics of water-conducting tissues leads to a safety vs. efficiency trade-off. 3. Significant HNS was found in 43 of 48 field studies across vegetation types ranging from arid to wet, though its role in coexistence remains to be proven in most cases. Temporal partitioning promotes coexistence through the storage effect in arid plant communities, but has yet to be shown elsewhere. In only a few cases is it possible to unequivocally link HNS to a particular trade-off. 4. Synthesis. The field and experimental evidence make it clear that HNS is widespread, though it is less clear what its precise mechanisms or consequences are. HNS mechanisms should be revealed by further study of the constraints and trade-offs that govern how plants obtain and use water and HNS can be mechanistically linked to its consequences with appropriate community models. In a changing climate, such an integrated programme would pay dividends for global change research

Natural history of Arabidopsis thaliana and oomycete symbioses

Molecular ecology of plant–microbe interactions has immediate significance for filling a gap in knowledge between the laboratory discipline of molecular biology and the largely theoretical discipline of evolutionary ecology. Somewhere in between lies conservation biology, aimed at protection of habitats and the diversity of species housed within them. A seemingly insignificant wildflower called Arabidopsis thaliana has an important contribution to make in this endeavour. It has already transformed botanical research with deepening understanding of molecular processes within the species and across the Plant Kingdom; and has begun to revolutionize plant breeding by providing an invaluable catalogue of gene sequences that can be used to design the most precise molecular markers attainable for marker-assisted selection of valued traits. This review describes how A. thaliana and two of its natural biotrophic parasites could be seminal as a model for exploring the biogeography and molecular ecology of plant–microbe interactions, and specifically, for testing hypotheses proposed from the geographic mosaic theory of co-evolution

Phylogenetic Analysis Suggests That Habitat Filtering Is Structuring Marine Bacterial Communities Across the Globe

The phylogenetic structure and community composition were analysed in an existing data set of marine bacterioplankton communities to elucidate the evolutionary and ecological processes dictating the assembly. The communities were sampled from coastal waters at nine locations distributed worldwide and were examined through the use of comprehensive clone libraries of 16S ribosomal RNA genes. The analyses show that the local communities are phylogenetically different from each other and that a majority of them are phylogenetically clustered, i.e. the species (operational taxonomic units) were more related to each other than expected by chance. Accordingly, the local communities were assembled non-randomly from the global pool of available bacterioplankton. Further, the phylogenetic structures of the communities were related to the water temperature at the locations. In agreement with similar studies, including both macroorganisms and bacteria, these results suggest that marine bacterial communities are structured by “habitat filtering”, i.e. through non-random colonization and invasion determined by environmental characteristics. Different bacterial types seem to have different ecological niches that dictate their survival in different habitats. Other eco-evolutionary processes that may contribute to the observed phylogenetic patterns are discussed. The results also imply a mapping between phenotype and phylogenetic relatedness which facilitates the use of community phylogenetic structure analysis to infer ecological and evolutionary assembly processes

Scaling up the effects of inbreeding depression from individuals to metapopulations

Abstract Inbreeding is common in nature, and many laboratory studies have documented that inbreeding depression can reduce the fitness of individuals. Demonstrating the consequences of inbreeding depression on the growth and persistence of populations is more challenging because populations are often regulated by density- or frequency-dependent selection and influenced by demographic and environmental stochasticity. A few empirical studies have shown that inbreeding depression can increase extinction risk of local populations. The importance of inbreeding depression at the metapopulation level has been conjectured based on population-level studies but has not been evaluated. We quantified the impact of inbreeding depression affecting the fitness of individuals on metapopulation persistence in heterogeneous habitat networks of different sizes and habitat configuration in a context of natural butterfly metapopulations. We developed a spatial individual-based simulation model of metapopulations with explicit genetics. We used Approximate Bayesian Computation to fit the model to extensive demographic, genetic, and life-history data available for the well-studied Glanville fritillary butterfly (Melitaea cinxia) metapopulations in the Åland islands in SW Finland. We compared 18 semi-independent habitat networks differing in size and fragmentation. The results show that inbreeding is more frequent in small habitat networks, and consequently, inbreeding depression elevates extinction risks in small metapopulations. Metapopulation persistence and neutral genetic diversity maintained in the metapopulations increase with the total habitat amount in and mean patch size of habitat networks. Dispersal and mating behavior interact with landscape structure to determine how likely it is to encounter kin while looking for mates. Inbreeding depression can decrease the viability of small metapopulations even when they are strongly influenced by stochastic extinction-colonization dynamics and density-dependent selection. The findings from this study support that genetic factors, in addition to demographic factors, can contribute to extinctions of small local populations and also of metapopulations. This article is protected by copyright. All rights reserved.Peer reviewe

Ecological Invasion, Roughened Fronts, and a Competitor's Extreme Advance: Integrating Stochastic Spatial-Growth Models

Both community ecology and conservation biology seek further understanding of factors governing the advance of an invasive species. We model biological invasion as an individual-based, stochastic process on a two-dimensional landscape. An ecologically superior invader and a resident species compete for space preemptively. Our general model includes the basic contact process and a variant of the Eden model as special cases. We employ the concept of a "roughened" front to quantify effects of discreteness and stochasticity on invasion; we emphasize the probability distribution of the front-runner's relative position. That is, we analyze the location of the most advanced invader as the extreme deviation about the front's mean position. We find that a class of models with different assumptions about neighborhood interactions exhibit universal characteristics. That is, key features of the invasion dynamics span a class of models, independently of locally detailed demographic rules. Our results integrate theories of invasive spatial growth and generate novel hypotheses linking habitat or landscape size (length of the invading front) to invasion velocity, and to the relative position of the most advanced invader.Comment: The original publication is available at www.springerlink.com/content/8528v8563r7u2742

Phylogenetic Patterns of Colonization and Extinction in Experimentally Assembled Plant Communities

Evolutionary history has provided insights into the assembly and functioning of plant communities, yet patterns of phylogenetic community structure have largely been based on non-dynamic observations of natural communities. We examined phylogenetic patterns of natural colonization, extinction and biomass production in experimentally assembled communities.We used plant community phylogenetic patterns two years after experimental diversity treatments (1, 2, 4, 8 or 32 species) were discontinued. We constructed a 5-gene molecular phylogeny and statistically compared relatedness of species that colonized or went extinct to remaining community members and patterns of aboveground productivity. Phylogenetic relatedness converged as species-poor plots were colonized and speciose plots experienced extinctions, but plots maintained more differences in composition than in phylogenetic diversity. Successful colonists tended to either be closely or distantly related to community residents. Extinctions did not exhibit any strong relatedness patterns. Finally, plots that increased in phylogenetic diversity also increased in community productivity, though this effect was inseparable from legume colonization, since these colonists tended to be phylogenetically distantly related.We found that successful non-legume colonists were typically found where close relatives already existed in the sown community; in contrast, successful legume colonists (on their own long branch in the phylogeny) resulted in plots that were colonized by distant relatives. While extinctions exhibited no pattern with respect to relatedness to sown plotmates, extinction plus colonization resulted in communities that converged to similar phylogenetic diversity values, while maintaining differences in species composition

High dispersal ability is related to fast life-history strategies

1. Seed dispersal is an essential, yet often overlooked process in plant ecology and evolution, affecting adaptation capacity, population persistence and invasiveness. A species’ ability to disperse is expected to covary with other life‐history traits to form dispersal syndromes. Dispersal might be linked to the rate of life history, fecundity or generation time, depending on the relative selection pressures of bet‐hedging, kin competition or maintaining gene flow. However, the linkage between dispersal and plant life‐history strategies remains unknown because it is difficult to observe, quantify and manipulate the influence of dispersal over large spatiotemporal scales. 2. We integrate datasets describing plant vital rates, dispersal and functional traits to incorporate dispersal explicitly into the rich spectra of plant life‐history strategies. For 141 plant species, we estimated dispersal ability by predicting maximum dispersal distances using allometric relationships based on growth form, dispersal mode, terminal velocity and seed mass. We derived life‐history traits from matrix population models parameterized with field data from the COMPADRE Plant Matrix Database. We analysed the covariation in dispersal ability and life‐history traits using multivariate techniques. 3. We found that three main axes of variation described plant dispersal syndromes: the fast‐slow life‐history continuum, the dispersal strategy axis and the reproductive strategy axis. On the dispersal strategy axis, species’ dispersal abilities were positively correlated with aspects of fast life histories. Species with a high net reproductive rate, a long window of reproduction, low likelihood of escaping senescence and low shrinkage tendencies disperse their seeds further. The overall phylogenetic signal in our multidimensional analyses was low (Pagel's λ < 0.24), implying a high degree of taxonomic generality in our findings. 4. Synthesis. Dispersal has been largely neglected in comparative demographic studies, despite its pivotal importance for populations. Our explicit incorporation of dispersal in a comparative life‐history framework provides key insights to bridge the gap between dispersal ecology and life‐history traits. Species with fast life‐history strategies disperse their seeds further than slow‐living plants, suggesting that longer dispersal distances may allow these species to take advantage of habitats varying unpredictably in space and time as a bet‐hedging strategy

Vegetation dynamics and plant constraints: separating generalities and specifics

Vegetation dynamics is a stochastic process of species replacement after disturbance. It occurs because individual species are limited by general constraints and trade-offs. As these constraints and trade-offs are becoming better known, we understand more about the relationships between disturbance dynamics, species pools, and vegetation dynamics. This paper provides a summary of recent work on plant scaling and ecological trade-offs, and explores its implications for vegetation dynamics. Those aspects of succession that are predictable . given the local species complement . can be understood as consequences of these general patterns and constraints. Several are explored in this paper. The inherently stochastic nature of the process derives from the disturbance dynamics that forces it, from the sampling processes that are responsible for selecting potential invaders, and from the chance processes involved in species interactions. The dynamics of species that invade established communities is the least understood but potentially the most crucial aspect of vegetation dynamics. The relation of community invasion to gap creation and to scaling constraints is briefly discussed

Distorted Views of Biodiversity: Spatial and Temporal Bias in Species Occurrence Data

Boakes et al. compile and analyze a historical dataset of 170,000 bird sightings over two centuries and show how changing trends in data gathering may confound a true picture of biodiversity change

High-Dimensional Coexistence of Temperate Tree Species: Functional Traits, Demographic Rates, Life-History Stages, and Their Physical Context

Theoretical models indicate that trade-offs between growth and survival strategies of tree species can lead to coexistence across life history stages (ontogeny) and physical conditions experienced by individuals. There exist predicted physiological mechanisms regulating these trade-offs, such as an investment in leaf characters that may increase survival in stressful environments at the expense of investment in bole or root growth. Confirming these mechanisms, however, requires that potential environmental, ontogenetic, and trait influences are analyzed together. Here, we infer growth and mortality of tree species given size, site, and light characteristics from forest inventory data from Wisconsin to test hypotheses about growth-survival trade-offs given species functional trait values under different ontogenetic and environmental states. A series of regression analyses including traits and rates their interactions with environmental and ontogenetic stages supported the relationships between traits and vital rates expected from the expectations from tree physiology. A combined model including interactions between all variables indicated that relationships between demographic rates and functional traits supports growth-survival trade-offs and their differences across species in high-dimensional niche space. The combined model explained 65% of the variation in tree growth and supports a concept of community coexistence similar to Hutchinson's n-dimensional hypervolume and not a low-dimensional niche model or neutral model