New insights into the Weichselian environment and climate of the East Siberian Arctic, derived from fossil insects, plants, and mammals

Multidisciplinary study of a key section on the Laptev Sea Coast (Bykovsky Peninsula, east Lena Delta) in 1998–2001 provides the most complete record of Middle and Late Weichselian environments in the East Siberian Arctic. The 40-m high Mamontovy Khayata cliff is a typical Ice Complex section built of icy silts with a network of large syngenetic polygonal ice wedges, and is richly fossiliferous. In combination with pollen, plant macrofossil and mammal fossils, a sequence of ca 70 insect samples provides a new interpretation of the environment and climate of the area between ca 50 and 12 ka. The large number of radiocarbon dates from the section, together with an extensive 14C database on mammal bones, allows chronological correlation of the various proxies. The Bykovsky record shows how climate change, and the Last Glacial Maximum in particular, affected terrestrial organisms such as insects and large grazing mammals. Both during the presumed “Karginsky Interstadial” (MIS 3) and the Sartanian Glacial (MIS 2), the vegetation remained a mosaic arctic grassland with relatively high diversity of grasses and herbs and dominance of xeric habitats: the tundra-steppe type. This biome was supported by a constantly very continental climate, caused by low sea level and enormous extension of shelf land. Variations within the broad pattern were caused mainly by fluctuations in summer temperature, related to global trends but overprinted by the effect of continentality. No major changes in humidity were observed nor were advances of modern-type forest or forest-tundra recorded, suggesting a major revision of the “Karginsky Interstadial” paradigm. The changing subtypes of the tundra-steppe environment were persistently favourable for mammalian grazers, which inhabited the shelf lowlands throughout the studied period. Mammal population numbers were lowered during the LGM, especially toward its end, and then flourished in a short, but impressive peak in the latest Weichselian, just before the collapse of the tundra-steppe biome. Throughout MIS 3 and MIS 2, the climate remained very favourable for the aggradation of permafrost. No events of regional permafrost degradation were observed in the continuous Bykovsky sequence until the very end of the Pleistocene

Genetic Structure and Extinction of the Woolly Mammoth, Mammuthus primigenius

SummaryThe interval since circa 50 Ka has been a period of significant species extinctions among the large mammal fauna. However, the relative roles of an increasing human presence and a synchronous series of complex environmental changes in these extinctions have yet to be fully resolved [1]. Recent analyses of fossil material from Beringia have clarified our understanding of the spatiotemporal pattern of Late Pleistocene extinctions, identifying periods of population turnover well before the last glacial maximum (LGM: circa 21 Ka) or subsequent human expansion [2–4]. To examine the role of pre-LGM population changes in shaping the genetic structure of an extinct species, we analyzed the mitochondrial DNA of woolly mammoths in western Beringia and across its range. We identify genetic signatures of a range expansion of mammoths, from eastern to western Beringia, after the last interglacial (circa 125 Ka), and then an extended period during which demographic inference indicates no population-size increase. The most marked change in diversity at this time is the loss of one of two major mitochondrial lineages

Comments on the Electroweak Phase Transition

We report on an investigation of various problems related to the theory of the electroweak phase transition. This includes a determination of the nature of the phase transition, a discussion of the possible role of higher order radiative corrections and the theory of the formation and evolution of the bubbles of the new phase. We find in particular that no dangerous linear terms appear in the effective potential. However, the strength of the first order phase transition is 2/3 times less than what follows from the one-loop approximation. This rules out baryogenesis in the minimal version of the electroweak theory.Comment: 14 pages, 2 figures (not included

Ancient DNA Analyses Exclude Humans as the Driving Force Behind Late Pleistocene Musk Ox (Ovibos moschatus) Population Dynamics

The causes of the late Pleistocene megafaunal extinctions are poorly understood. Different lines of evidence point to climate change, the arrival of humans, or a combination of these events as the trigger. Although many species went extinct, others, such as caribou and bison, survived to the present. The musk ox has an intermediate story: relatively abundant during the Pleistocene, it is now restricted to Greenland and the Arctic Archipelago. In this study, we use ancient DNA sequences, temporally unbiased summary statistics, and Bayesian analytical techniques to infer musk ox population dynamics throughout the late Pleistocene and Holocene. Our results reveal that musk ox genetic diversity was much higher during the Pleistocene than at present, and has undergone several expansions and contractions over the past 60,000 years. Northeast Siberia was of key importance, as it was the geographic origin of all samples studied and held a large diverse population until local extinction at approximate to 45,000 radiocarbon years before present (14C YBP). Subsequently, musk ox genetic diversity reincreased at ca. 30,000 14C YBP, recontracted at ca. 18,000 14C YBP, and finally recovered in the middle Holocene. The arrival of humans into relevant areas of the musk ox range did not affect their mitochondrial diversity, and both musk ox and humans expanded into Greenland concomitantly. Thus, their population dynamics are better explained by a non-anthropogenic cause (for example, environmental change), a hypothesis supported by historic observations on the sensitivity of the species to both climatic warming and fluctuations

Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution

<p>Abstract</p> <p>Background</p> <p>The scientific literature contains many examples where DNA sequence analyses have been used to provide definitive answers to phylogenetic problems that traditional (non-DNA based) approaches alone have failed to resolve. One notable example concerns the rhinoceroses, a group for which several contradictory phylogenies were proposed on the basis of morphology, then apparently resolved using mitochondrial DNA fragments.</p> <p>Results</p> <p>In this study we report the first complete mitochondrial genome sequences of the extinct ice-age woolly rhinoceros (<it>Coelodonta antiquitatis</it>), and the threatened Javan (<it>Rhinoceros sondaicus</it>), Sumatran (<it>Dicerorhinus sumatrensis</it>), and black (<it>Diceros bicornis</it>) rhinoceroses. In combination with the previously published mitochondrial genomes of the white (<it>Ceratotherium simum</it>) and Indian (<it>Rhinoceros unicornis</it>) rhinoceroses, this data set putatively enables reconstruction of the rhinoceros phylogeny. While the six species cluster into three strongly supported sister-pairings: (i) The black/white, (ii) the woolly/Sumatran, and (iii) the Javan/Indian, resolution of the higher-level relationships has no statistical support. The phylogenetic signal from individual genes is highly diffuse, with mixed topological support from different genes. Furthermore, the choice of outgroup (horse <it>vs </it>tapir) has considerable effect on reconstruction of the phylogeny. The lack of resolution is suggestive of a hard polytomy at the base of crown-group Rhinocerotidae, and this is supported by an investigation of the relative branch lengths.</p> <p>Conclusion</p> <p>Satisfactory resolution of the rhinoceros phylogeny may not be achievable without additional analyses of substantial amounts of nuclear DNA. This study provides a compelling demonstration that, in spite of substantial sequence length, there are significant limitations with single-locus phylogenetics. We expect further examples of this to appear as next-generation, large-scale sequencing of complete mitochondrial genomes becomes commonplace in evolutionary studies.</p> <p><it>"The human factor in classification is nowhere more evident than in dealing with this superfamily (Rhinocerotoidea)." G. G. Simpson (1945)</it></p

Towards the Theory of Cosmological Phase Transitions

We discuss recent progress (and controversies) in the theory of finite temperature phase transitions. This includes the structure of the effective potential at a finite temperature, the infrared problem in quantum statistics of gauge fields, the theory of formation of critical and subcritical bubbles and the theory of bubble wall propagation.Comment: 50 p

Cbx4 maintains the epithelial lineage identity and cell proliferation in the developing stratified epithelium

During development, multipotent progenitor cells establish lineage-specific programmers of gene activation and silencing underlying their differentiation into specialized cell types. We show that the Polycomb component Cbx4 serves as a critical determinant that maintains the epithelial identity in the developing epidermis by repressing nonepidermal gene expression programs. Cbx4 ablation in mice results in a marked decrease of the epidermal thickness and keratinocyte (KC) proliferation associated with activation of numerous neuronal genes and genes encoding cyclin-dependent kinase inhibitors (p16/p19 and p57). Furthermore, the chromodomain- and SUMO E3 ligase–dependent Cbx4 activities differentially regulate proliferation, differentiation, and expression of nonepidermal genes in KCs. Finally, Cbx4 expression in KCs is directly regulated by p63 transcription factor, whereas Cbx4 overexpression is capable of partially rescuing the effects of p63 ablation on epidermal development. These data demonstrate that Cbx4 plays a crucial role in the p63-regulated program of epidermal differentiation, maintaining the epithelial identity and proliferative activity in KCs via repression of the selected nonepidermal lineage and cell cycle inhibitor genes

Evolution, systematics, and phylogeography of Pleistocene horses in the new world: A molecular perspective

The rich fossil record of horses has made them a classic example of evolutionary processes. However, while the overall picture of equid evolution is well known, the details are surprisingly poorly understood, especially for the later Pliocene and Pleistocene, c. 3 million to 0.01 million years (Ma) ago, and nowhere more so than in the Americas. There is no consensus on the number of equid species or even the number of lineages that existed in these continents. Likewise, the origin of the endemic South American genus Hippidion is unresolved, as is the phylogenetic position of the "stilt-legged" horses of North America. Using ancient DNA sequences, we show that, in contrast to current models based on morphology and a recent genetic study, Hippidion was phylogenetically close to the caballine (true) horses, with origins considerably more recent than the currently accepted date of c. 10 Ma. Furthermore, we show that stilt-legged horses, commonly regarded as Old World migrants related to the hemionid asses of Asia, were in fact an endemic North American lineage. Finally, our data suggest that there were fewer horse species in late Pleistocene North America than have been named on morphological grounds. Both caballine and stilt-legged lineages may each have comprised a single, wide-ranging species.Instituto Multidisciplinario de Biología CelularFacultad de Ciencias Naturales y Muse