Polyploid lineages in the genus Porphyra

Whole genome duplication is now accepted as an important evolutionary force, but the genetic factors and the life history implications affecting the existence and abundance of polyploid lineages within species are still poorly known. Polyploidy has been mainly studied in plant model species in which the sporophyte is the dominant phase in their life history. In this study, we address such questions in a novel system (Porphyra, red algae) where the gametophyte is the dominant phase in the life history. Three Porphyra species (P. dioica, P. umbilicalis, and P. linearis) were used in comparisons of ploidy levels, genome sizes and genetic differentiation using flow cytometry and 11 microsatellite markers among putative polyploid lineages. Multiple ploidy levels and genome sizes were found in Porphyra species, representing different cell lines and comprising several cytotype combinations among the same and different individuals. In P. linearis, genetic differentiation was found among three polyploid lineages: triploid, tetraploid and mixoploids, representing different evolutionary units. We conclude that the gametophytic phase (n) in Porphyra species is not haploid, contradicting previous theories. New hypotheses for the life histories of Porphyra species are discussed.FCT (Fundacao para a Ciencia e a Tecnologia, Portugal) [SFRH/BPD/109452/2015, NORIGENOMICS - PTDC/MAR/099698/2008, UID/Multi/04326/2013, BIODIVERSA/004/2015-MARFOR

Some don't like it hot: microhabitat-dependent thermal and water stresses in a trailing edge population

The distributional limits of species in response to environmental change are usually studied at large temporal and/or geographical scales. However, organismal scale habitat variation can be overlooked when investigating large-scale averages of key factors such as temperature. We examine how microhabitat thermal conditions relate to physiological limits, which may contribute to recent range shifts in an intertidal alga. We defined the onset and maximum temperatures of the heat-shock response (HSR) for a southern edge population of Fucus vesiculosus, which has subsequently become extinct. The physiological threshold for resilience (assayed using chlorophyll fluorescence) coincided with declining HSR, determined from the temperature-dependent induction of seven heat-shock protein transcripts. In intertidal habitats, temperature affects physiology directly by controlling body temperature and indirectly through evaporative water loss. We investigated the relationship between the thermal environment and in situ molecular HSR at microhabitat scales. Over cm to m scales, four distinct microhabitats were defined in algal patches (canopy surface, patch edge, subcanopy, submerged channels), revealing distinct thermal and water stress environments during low-tide emersion. The in situ HSR agreed with estimated tissue temperatures in all but one microhabitat. Remarkably, in the most thermally extreme microhabitat (canopy surface), the HSR was essentially absent in desiccated tissue, providing a potential escape from the cellular metabolic costs of thermal stress. Meteorological records, microenvironmental thermal profiles and HSR data indicate that the maximum HSR is approached or exceeded in hydrated tissue during daytime low tides for much of the year. Furthermore, present-day summer seawater temperatures are sufficient to induce HSR during high-tide immersion, preventing recovery and resulting in continuous HSR during daytime low-tide cycles over the entire summer. HSR in the field matched microhabitat temperatures more closely than local seawater or atmospheric data, suggesting that the impacts of climatic change are best understood at the microhabitat scale, particularly in intertidal areas.FCT - Portuguese Science Foundation [POCTI/MAR/61105/2004, EXCL/AAG-GLO/0661/2012, SFRH/BPD/63/03/2009, SFRH/BD/74436/2010]info:eu-repo/semantics/publishedVersio

Less is more: seagrass restoration success using less vegetation per area

Seagrass restoration in open coast environments presents unique challenges. Traditional sod transplant designs, though relatively successful in these environments, are impractical for large-scale restoration due to high biomass requirements. Here, we develop the checkers design, which aims to optimise the usage of biomass by transplanting fewer sods in a checkerboard pattern. We established six plots (9 m2 each) for each species (Zostera marina and Zostera noltei), with 25 sods in each plot. The area, percent cover, density, and leaf length were measured at 1, 6, and 12 months. The plots located on the seaward end of the transplant design vanished over the winter, suggesting location-dependent survival influenced by winter storms. Nevertheless, both species exhibited increased percentages of cover, density, and vegetated area after one year, with variations between species. Z. noltei showed a slower expansion but greater resilience to winter, while Z. marina displayed a higher density and cover over the first 6 months but experienced area loss during the winter. Despite these differences, both species survived and increased vegetated areas after one year, indicating the viability and promise of the checkers method for large-scale restoration. However, careful consideration of location or storm-mitigating measures is essential for the successful implementation of this method.LA/P/0101/2020; CRESC Algarve 2020 and COMPETE 2020 through project EMBRC.PT ALG-01-0145-FEDER-022121info:eu-repo/semantics/publishedVersio

Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa)

The siphonous algae of the Caulerpa genus harbor internal microbial communities hypothesized to play important roles in development, defense and metabolic activities of the host. Here, we characterize the endophytic bacterial community of four Caulerpa taxa in the Mediterranean Sea, through 16S rRNA amplicon sequencing. Results reveal a striking alpha diversity of the bacterial communities, similar to levels found in sponges and coral holobionts. These comprise (1) a very small core community shared across all hosts ( 70%) species-specific fraction of the community, forming very specific clusters revealed by modularity in networks of cooccurrence, even in areas where distinct Caulerpa taxa occurred in sympatry. Indirect inferences based on sequence homology suggest that these communities may play an important role in the metabolism of their host, in particular on their ability to grow on anoxic sediment. These findings support the hologenome theory and the need for a holistic framework in ecological and evolutionary studies of these holobionts that frequently become invasive.Portuguese Foundation for Science and Technology (FCT); FEDER; project IBISA [PTDC / MAR / 64749 / 2006]; PhD fellowship from FCT [SFRH/BD/30043/2006]; FSEinfo:eu-repo/semantics/publishedVersio

Interactions of daylength, temperature and nutrients affect thresholds for life stage transitions in the kelp Laminaria digitata (Phaeophyceae)

Kelp beds worldwide are under pressure from ongoing climate and environmental change. Along European coastlines increases in seawater temperature and changes in nutrient conditions occur where upwelling events are disrupted and also along eutrophicated coasts. In addition, seaweed responses to change may interact with seasonal daylength cycles. We performed a factorial experiment to examine the combined effects of seawater temperatures, nutrient regimes and photoperiod (long and short days) in order to better understand how latitudinal or seasonal differences in daylengths affect the sensitivity of transient microscopic kelp stages of Laminaria digitata from the North Sea to warming and eutrophication. While the optimal temperature range for vegetative gametophyte growth was 10 degrees C-18 degrees C under long summer photoperiod conditions, gametogenesis was induced at lower temperatures between 5 degrees C and 15 degrees C, with maximum sporophyte development under long photoperiods and enriched nutrient regimes, which represent local late spring conditions. Although gametogenesis was fastest at 10 degrees C-15 degrees C, sporophyte recruitment was highest at 5 degrees C. As these particular early life cycle processes in L. digitata have different temperature optima, this may drive the seasonal cycle of recruitment in the field. Increasing summer temperatures due to global warming will increase gametophyte size due to enhanced vegetative growth and inhibition of gametogenesis. This will probably lead to delayed but enhanced recruitment of new sporophytes under cooler autumn to spring conditions over a wide geographical scale, preventing the formation of juvenile sporophytes under stressful summer conditions and possibly changing annual recruitment patterns.STSM Grant from the COST Action "Phycomorph" [FA1406]; Portuguese Science Foundation (FCT) programs [EXCL/AAG-GLO/0661/2012, UID/Multi/04326/2013]; BiodiVERsA [Biodiversa/0004/2015, PTDC/MAR-EST/6053/2014]info:eu-repo/semantics/publishedVersio

Bottom trawling threatens future climate refugia of rhodoliths globally

Climate driven range shifts are driving the redistribution of marine species and threatening the functioning and stability of marine ecosystems. For species that are the structural basis of marine ecosystems, such effects can be magnified into drastic loss of ecosystem functioning and resilience. Rhodoliths are unattached calcareous red algae that provide key complex three-dimensional habitats for highly diverse biological communities. These globally distributed biodiversity hotspots are increasingly threatened by ongoing environmental changes, mainly ocean acidification and warming, with wide negative impacts anticipated in the years to come. These are superimposed upon major local stressors caused by direct destructive impacts, such as bottom trawling, which act synergistically in the deterioration of the rhodolith ecosystem health and function. Anticipating the potential impacts of future environmental changes on the rhodolith biome may inform timely mitigation strategies integrating local effects of bottom trawling over vulnerable areas at global scales. This study aimed to identify future climate refugia, as regions where persistence is predicted under contrasting climate scenarios, and to analyze their trawling threat levels. This was approached by developing species distribution models with ecologically relevant environmental predictors, combined with the development of a global bottom trawling intensity index to identify heavily fished regions overlaying rhodoliths. Our results revealed the importance of light, thermal stress and pH driving the global distribution of rhodoliths. Future projections showed poleward expansions and contractions of suitable habitats at lower latitudes, structuring cryptic depth refugia, particularly evident under the more severe warming scenario RCP 8.5. Our results suggest that if management and conservation measures are not taken, bottom trawling may directly threaten the persistence of key rhodolith refugia. Since rhodoliths have slow growth rates, high sensitivity and ecological importance, understanding how their current and future distribution might be susceptible to bottom trawling pressure, may contribute to determine the fate of both the species and their associated communities.FCT: UIDB/04326/2020/ PTDC/BIA-CBI/6515/2020/ SFRH/BD/144878/2019/ SFRH/BSAB/150485/2019/ norm-DL57/2016/CP1361/CT0035info:eu-repo/semantics/publishedVersio

Behind the mask: cryptic genetic diversity of Mytilus galloprovincialis along southern European and northern African shores

Morphological uniformity in geographically widespread species may cause genetically distinct entities to pass unnoticed if they can only be detected by molecular approaches. The importance of uncovering such cryptic diversity is prompted by the need to understand the putative adaptive potential of populations along species ranges and to manage biodiversity conservation efforts. In this study, we aim to assess cryptic intraspecific genetic diversity and taxonomic status of the widely distributed intertidal mussel Mytilus galloprovincialis, along Atlantic southwestern (SW) Iberian, Atlantic northwestern (NW) Moroccan and Mediterranean Tunisian shores. By using mitochondrial (16S restriction-fragment length polymorphism) and nuclear (polyphenolic adhesive protein gene, Glu-5') markers, we discovered a more complex taxonomic diversity of M. galloprovincialis than previously known. Both Atlantic and Mediterranean haplogroups of M. galloprovincialis were detected along Atlantic SW Iberian shores along with M. galloprovincialis/edulis hybrids (92.2% Atlantic, 3.9% Mediterranean and 3.9% hybrids). In contrast, NW Moroccan populations consisted solely of Atlantic M. galloprovincialis. The Mediterranean populations did not include M. galloprovincialis/ edulis hybrids, but both Atlantic (58%) and Mediterranean (42%) lineages were detected. Divergent selection between coastlines and/or indirect larval dispersal by human activities may be the drivers of this geographically structured genetic diversity.Fundacao para a Ciencia e Tecnologia (FCT), Portugal; FCT [PTDC/BIA-BEC/103916/2008]; Bilateral Project (Acordo Portugal - Tunisia)info:eu-repo/semantics/publishedVersio

Response of kelps from different latitudes to consecutive heat shock

Although extensive work has focused on kelp responses to constant temperature, little is known about their response to the consecutive temperature shocks they are often exposed to in the shallow subtidal and intertidal pools. Here we characterized the responses of the two southernmost forest-forming kelp species in the Northeast Atlantic, Laminaria ochroleuca De La Pylaie and Saccorhiza polyschides (Lightf.) Batt. to multiple cycles of thermal stress. Individuals from the upper vertical limit of the geographical distribution edges where the two species co-occur forming forests, France and Portugal, were exposed to 4 consecutive cycles of thermal shock simulating a spring tide. A 24 h cycle consisted of culture at 15 degrees C, plus 1 h heat shock at one of five levels (20, 22.5, 25, 27.5 or 30 degrees C). The maximum quantum yield (Fv/Fm) of chlorophyll fluorescence of photosystem 2 (PS2) was used to detect impaired reaction center function, as a proxy for individual fitness costs, during recovery from heat shock. Both species showed resilience to temperatures from 20 to 25 degrees C. While exposure to 27.5 degrees C caused no inhibition to Fv/Fm of S. polyschides, a threshold was met above this temperature and exposure to 30 degrees C caused the death of all individuals. In contrast, L ochroleuca from France was damaged but able to survive 30 degrees C shocks and individuals from Portugal showed complete resilience to this treatment. In both species, blade elongation decreased with increasing temperature, with necrosis surpassing growth at higher temperatures. Resilience to high temperature exposure may confer an advantage to L ochroleuca to colonize intertidal pools on the Portuguese coast, in agreement with the observation that both species recruit in tide pools but only L ochroleuca reach adulthood. Our results indicate that as summer temperatures increase with climate change, the disappearance of S. polyschides from intertidal pools and a decrease in the density of L ochroleuca can be expected. (C) 2014 Elsevier B.V. All rights reserved.ASSEMBLE (ASSociation of European Marine Biological Laboratories) [227799]; Portuguese Science and Technology Foundation (FCT); FCT [PTDC/AAC-CLI/109108/2008, EXCL/AAG-GLO/0661/2012]info:eu-repo/semantics/publishedVersio

Mitochondrial genomes of the key zooplankton copepods Arctic Calanus glacialis and North Atlantic Calanus finmarchicus with the longest crustacean non-coding regions

We determined the nearly complete mitochondrial genomes of the Arctic Calanus glacialis and its North Atlantic sibling Calanus finmarchicus, which are key zooplankton components in marine ecosystems. The sequenced part of C. glacialis mitogenome is 27,342 bp long and consists of two contigs, while for C. finmarchicus it is 29,462 bp and six contigs, what makes them the longest reported copepod mitogenomes. The typical set of metazoan mitochondrial genes is present in these mitogenomes, although the non-coding regions (NCRs) are unusually long and complex. The mitogenomes of the closest species C. glacialis and C. finmarchicus, followed by the North Pacific C. sinicus, are structurally similar and differ from the much more typical of deep-water, Arctic C. hyperboreus. This evolutionary trend for the expansion of NCRs within the Calanus mitogenomes increases mitochondrial DNA density, what resulted in its similar density to the nuclear genome. Given large differences in the length and structure of C. glacialis and C. finmarchicus mitogenomes, we conclude that the species are genetically distinct and thus cannot hybridize. The molecular resources presented here: the mitogenomic and rDNA sequences, and the database of repetitive elements should facilitate the development of genetic markers suitable in pursuing evolutionary research in copepods.Polish Ministry of Science and Higher Education [Iuventus Plus] [IP2014 050573]; FCT-CCMAR Portugal [Multi/04326/2013

Genetic Divergence for the Amphibian Pleurodeles waltl in Southwest Portugal: Dispersal Barriers Shaping Geographic Patterns

Dispersal and vicariance are the principal mechanisms responsible for the formation of biogeographic patterns, driven or maintained by the role of past and current barriers to dispersal. Southwest Portugal harbors a rich endemic fauna and flora where strongly differentiated taxa can be observed, suggesting ancient isolating mechanisms acted in this region. In this study, we used information from two partial mitochondrial sequences, combined with information from microsatellite loci and amplification success, to investigate biogeographic patterns of genetic divergence in populations of Pleurodeles waltl in Portugal. Our results demonstrate genetic differentiation at different time frames creating distinct populations in southwest Portugal, which might have arisen following isolation by a large river estuary and mountainous barriers. Habitat destruction associated with agricultural intensification raises conservation concerns over the unique biodiversity in this region.Fundacao para a Ciencia e Tecnologia (Portugal); FEDER [PTDC/BIA-BDE/68730/2006, SFRH/BD/24064/2005