Quantum Zeno Effect Explains Magnetic-Sensitive Radical-Ion-Pair Reactions

Chemical reactions involving radical-ion pairs are ubiquitous in biology, since not only are they at the basis of the photosynthetic reaction chain, but are also assumed to underlie the biochemical magnetic compass used by avian species for navigation. Recent experiments with magnetic-sensitive radical-ion pair reactions provided strong evidence for the radical-ion-pair magnetoreception mechanism, verifying the expected magnetic sensitivities and chemical product yield changes. It is here shown that the theoretical description of radical-ion-pair reactions used since the 70's cannot explain the observed data, because it is based on phenomenological equations masking quantum coherence effects. The fundamental density matrix equation derived here from basic quantum measurement theory considerations naturally incorporates the quantum Zeno effect and readily explains recent experimental observations on low- and high-magnetic-field radical-ion-pair reactions.Comment: 10 pages, 5 figure

Non-uniqueness of the Dirac theory in a curved spacetime

We summarize a recent work on the subject title. The Dirac equation in a curved spacetime depends on a field of coefficients (essentially the Dirac matrices), for which a continuum of different choices are possible. We study the conditions under which a change of the coefficient fields leads to an equivalent Hamiltonian operator H, or to an equivalent energy operator E. In this paper, we focus on the standard version of the gravitational Dirac equation, but the non-uniqueness applies also to our alternative versions. We find that the changes which lead to an equivalent operator H, or respectively to an equivalent operator E, are determined by initial data, or respectively have to make some point-dependent antihermitian matrix vanish. Thus, the vast majority of the possible coefficient changes lead neither to an equivalent operator H, nor to an equivalent operator E, whence a lack of uniqueness. We show that even the Dirac energy spectrum is not unique.Comment: 13 pages (standard 12pt article format). Text of a talk given at the 1st Mediterranean Conference on Classical and Quantum Gravity, Kolymbari (Greece), Sept. 14-18, 200

A test of the senses: fish select novel habitats by responding to multiple cues

Habitat-specific cues play an important role in orientation for animals that move through a mosaic of habitats. Environmental cues can be imprinted upon during early life stages to guide later return to adult habitats, yet many species must orient toward suitable habitats without previous experience of the habitat. It is hypothesized that multiple sensory cues may enable animals to differentiate between habitats in a sequential order relevant to the spatial scales over which the different types of information are conveyed, but previous research, especially for marine organisms, has mainly focused on the use of single cues in isolation. In this study, we investigated novel habitat selection through the use of three different sensory modalities (hearing, vision, and olfaction). Our model species, the French grunt, Haemulon flavolineatum, is a mangrove/seagrass-associated reef fish species that makes several habitat transitions during early life. Using several in situ and ex situ experiments, we tested the response of fish toward auditory, olfactory, and visual cues from four different habitats (seagrass beds, mangroves, rubble, and coral reef). We identified receptivity to multiple sensory cues during the same life phase, and found that different cues induced different reactions toward the same habitat. For example, early-juvenile fish only responded to sound from coral reefs and to chemical cues from mangroves/seagrass beds, while visual cues of conspecifics overruled olfactory cues from mangrove/seagrass water. Mapping these preferences to the ecology of ontogenetic movements, our results suggest sequential cue use would indeed aid successful orientation to novel key habitats in early life.Chantal M. Huijbers, Ivan Nagelkerken, Pauline A. C. Lössbroek, Ines E. Schulten, Andjin Siegenthaler, Marc W. Holderied, and Stephen D. Simpso

Results of the 1997–1998 multi-country FAO activity on containment and control of the western corn rootworm, Diabrotica virgifera virgifera LeConte, in Central Europe

A Food and Agriculture Organization of the United Nations Technical Cooperation Programme (TCP)was undertaken on the western corn rootworm (WCR)in 1997 –1998 to establish a permanent moni- toring network,evaluate a containment and control program,test the feasibility and effectiveness of using a Slam ®-based areawide pest management program,develop training materials,and conduct a risk assessment of the potential for WCR spread and establishment in other areas of Europe.TCP countries were Bosnia-Her- zegovina,Croatia,Hungary,and Romania.Bulgaria and Yugoslavia cooperated as unofficial TCP members. The data from the permanent monitoring network showed that the WCR had spread over an area of about 105,600 km 2 in Central Europe and that economic populations had developed on 14,000 km 2 in Yugoslavia through 1998.The containment and control trapping program,although designed to determine the feasibility of restricting the establishment of WCR beetles in an area,did not prove to be successful due to the number of WCR beetles encountered and their rapid movement into previously uninfested areas.The areawide pest management activity showed that the semiochemical Slam was highly efficacious against WCR beetles with residual activity for up to 2 weeks,thus making it a cost-effective alternative to other controls.Also, investigations showed that WCR will continue to spread and establish in other parts of Europe

The limit of N=(2,2) superconformal minimal models

The limit of families of two-dimensional conformal field theories has recently attracted attention in the context of AdS/CFT dualities. In our work we analyse the limit of N=(2,2) superconformal minimal models when the central charge approaches c=3. The limiting theory is a non-rational N=(2,2) superconformal theory, in which there is a continuum of chiral primary fields. We determine the spectrum of the theory, the three-point functions on the sphere, and the disc one-point functions.Comment: 37 pages, 3 figures; v2: minor corrections in section 5.3, version to be published in JHE

Overlapping variants in the blood, tissues and cell lines for patients with intracranial meningiomas are predominant in stem cell-related genes

Objective: Bulk tissue genomic analysis of meningiomas identified common somatic mutations, however, it often excluded blood-related variants. In contrast, genomic characterisation of primary cell lines that can provide critical information regarding growth and proliferation, have been rare. In our work, we identified the variants that are present in the blood, tissues and corresponding cell lines that are likely to be predictive, tumorigenic and progressive. Method: Whole-exome sequencing was used to identify variants and distinguish related pathways that exist in 42 blood, tissues and corresponding cell lines (BTCs) samples for patients with intracranial meningiomas. Conventional sequencing was used for the confirmation of variants. Integrative analysis of the gene expression for the corresponding samples was utilised for further interpretations. Results: In total, 926 BTC variants were detected, implicating 845 genes. A pathway analysis of all BTC genes with damaging variants indicated the 'cell morphogenesis involved in differentiation' stem cell-related pathway to be the most frequently affected pathway. Concordantly, five stem cell-related genes, GPRIN2, ALDH3B2, ASPN, THSD7A and SIGLEC6, showed BTC variants in at least five of the patients. Variants that were heterozygous in the blood and homozygous in the tissues or the corresponding cell lines were rare (average: 1.3 +/- 0.3%), and included variants in the RUNX2 and CCDC114 genes. An analysis comparing the variants detected only in tumours with aggressive features indicated a total of 240 BTC genes, implicating the 'homophilic cell adhesion via plasma membrane adhesion molecules' pathway, and identifying the stem cell-related transcription coactivator NCOA3/AIB1/SRC3 as the most frequent BTC gene. Further analysis of the possible impact of the poly-Q mutation present in the NCOA3 gene indicated associated deregulation of 15 genes, including the up-regulation of the stem cell related SEMA3D gene and the angiogenesis related VEGFA gene. Conclusion: Stem cell-related pathways and genes showed high prevalence in the BTC variants, and novel variants in stem cell-related genes were identified for meningioma. These variants can potentially be used as predictive, tumorigenic and progressive biomarkers for meningioma

Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing

The cellular process responsible for providing energy for most life on Earth, namely, photosynthetic light-harvesting, requires the cooperation of hundreds of proteins across an organelle, involving length and time scales spanning several orders of magnitude over quantum and classical regimes. Simulation and visualization of this fundamental energy conversion process pose many unique methodological and computational challenges. We present, in two accompanying movies, light-harvesting in the photosynthetic apparatus found in purple bacteria, the so-called chromatophore. The movies are the culmination of three decades of modeling efforts, featuring the collaboration of theoretical, experimental, and computational scientists. We describe the techniques that were used to build, simulate, analyze, and visualize the structures shown in the movies, and we highlight cases where scientific needs spurred the development of new parallel algorithms that efficiently harness GPU accelerators and petascale computers

Electronic structure and magnetic properties of the linear chain cuprates Sr_2CuO_3 and Ca_2CuO_3

Sr_2CuO_3 and Ca_2CuO_3 are considered to be model systems of strongly anisotropic, spin-1/2 Heisenberg antiferromagnets. We report on the basis of a band-structure analysis within the local density approximation and on the basis of available experimental data a careful analysis of model parameters for extended Hubbard and Heisenberg models. Both insulating compounds show half-filled nearly one-dimensional antibonding bands within the LDA. That indicates the importance of strong on-site correlation effects. The bonding bands of Ca_2CuO_3 are shifted downwards by 0.7 eV compared with Sr_2CuO_3, pointing to different Madelung fields and different on-site energies within the standard pd-model. Both compounds differ also significantly in the magnitude of the inter-chain dispersion along the crystallographical a-direction: \approx 100 meV and 250 meV, respectively. Using the band-structure and experimental data we parameterize a one-band extended Hubbard model for both materials which can be further mapped onto an anisotropic Heisenberg model. From the inter-chain dispersion we estimate a corresponding inter-chain exchange constant J_{\perp} \approx 0.8 and 3.6 meV for Sr_2CuO_3 and Ca_2CuO_3, respectively. Comparing several approaches to anisotropic Heisenberg problems, namely the random phase spin wave approximation and modern versions of coupled quantum spin chains approaches, we observe the advantage of the latter in the reproduction of reasonable values for the N\'eel temperature T_N and the magnetization m_0 at zero temperature. Our estimate of $J_{\perp}$ gives the right order of magnitude and the correct tendency going from Sr_2CuO_3 to Ca_2CuO_3. In a comparative study we also include CuGeO_3.Comment: 23 pages, 5 figures, 1 tabl

Statics, metastable states and barriers in protein folding: A replica variational approach

Protein folding is analyzed using a replica variational formalism to investigate some free energy landscape characteristics relevant for dynamics. A random contact interaction model that satisfies the minimum frustration principle is used to describe the coil-globule transition (characterized by T_CG), glass transitions (by T_A and T_K) and folding transition (by T_F). Trapping on the free energy landscape is characterized by two characteristic temperatures, one dynamic, T_A the other static, T_K (T_A> T_K), which are similar to those found in mean field theories of the Potts glass. 1)Above T_A, the free energy landscape is monotonous and polymer is melted both dynamically and statically. 2)Between T_A and T_K, the melted phase is still dominant thermodynamically, but frozen metastable states, exponentially large in number, appear. 3)A few lowest minima become thermodynamically dominant below T_K, where the polymer is totally frozen. In the temperature range between T_A and T_K, barriers between metastable states are shown to grow with decreasing temperature suggesting super-Arrhenius behavior in a sufficiently large system. Due to evolutionary constraints on fast folding, the folding temperature T_F is expected to be higher than T_K, but may or may not be higher than T_A. Diverse scenarios of the folding kinetics are discussed based on phase diagrams that take into account the dynamical transition, as well as the static ones.Comment: 41 pages, LaTeX, 9 EPS figure