Identification of the het-r vegetative incompatibility gene of Podospora anserina as a member of the fast evolving HNWD gene family

In fungi, vegetative incompatibility is a conspecific non-self recognition mechanism that restricts formation of viable heterokaryons when incompatible alleles of specific het loci interact. In Podospora anserina, three non-allelic incompatibility systems have been genetically defined involving interactions between het-c and het-d, het-c and het-e, het-r and het-v. het-d and het-e are paralogues belonging to the HNWD gene family that encode proteins of the STAND class. HET-D and HET-E proteins comprise an N-terminal HET effector domain, a central GTP binding site and a C-terminal WD repeat domain constituted of tandem repeats of highly conserved WD40 repeat units that define the specificity of alleles during incompatibility. The WD40 repeat units of the members of this HNWD family are undergoing concerted evolution. By combining genetic analysis and gain of function experiments, we demonstrate that an additional member of this family, HNWD2, corresponds to the het-r non-allelic incompatibility gene. As for het-d and het-e, allele specificity at the het-r locus is determined by the WD repeat domain. Natural isolates show allelic variation for het-

Ornstein-Zernike equation and Percus-Yevick theory for molecular crystals

We derive the Ornstein-Zernike equation for molecular crystals of axially symmetric particles and apply the Percus-Yevick approximation to this system. The one-particle orientational distribution function has a nontrivial dependence on the orientation and is needed as an input. Despite some differences, the Ornstein-Zernike equation for molecular crystals has a similar structure as for liquids. We solve both equations for hard ellipsoids on a sc lattice. Compared to molecular liquids, the tensorial orientational correlators exhibit less structure. However, depending on the lengths a and b of the rotation axis and the perpendicular axes of the ellipsoids, different behavior is found. For oblate and prolate ellipsoids with b >= 0.35 (units of the lattice constant), damped oscillations in distinct directions of direct space occur for some correlators. They manifest themselves in some correlators in reciprocal space as a maximum at the Brillouin zone edge, accompanied by maxima at the zone center for other correlators. The oscillations indicate alternating orientational fluctuations, while the maxima at the zone center originate from nematic-like orientational fluctuations. For a <= 2.5 and b <= 0.35, the oscillations are weaker. For a >= 3.0 and b <= 0.35, no oscillations occur any longer. For many of the correlators in reciprocal space, an increase of a at fixed b leads to a divergence at the zone center q = 0, consistent with nematic-like long range fluctuations, and for some oblate and prolate systems with b ~< 1.0 a simultaneous tendency to divergence of few other correlators at the zone edge is observed. Comparison with correlators from MC simulations shows satisfactory agreement. We also obtain a phase boundary for order-disorder transitions.Comment: 20 pages, 13 figures, submitted to Phys. Rev.

Phase behavior of the Confined Lebwohl-Lasher Model

The phase behavior of confined nematogens is studied using the Lebwohl-Lasher model. For three dimensional systems the model is known to exhibit a discontinuous nematic-isotropic phase transition, whereas the corresponding two dimensional systems apparently show a continuous Berezinskii-Kosterlitz-Thouless like transition. In this paper we study the phase transitions of the Lebwohl-Lasher model when confined between planar slits of different widths in order to establish the behavior of intermediate situations between the pure planar model and the three-dimensional system, and compare with previous estimates for the critical thickness, i.e. the slit width at which the transition switches from continuous to discontinuous.Comment: Submitted to Physical Review

Signum Function Method for Generation of Correlated Dichotomic Chains

We analyze the signum-generation method for creating random dichotomic sequences with prescribed correlation properties. The method is based on a binary mapping of the convolution of continuous random numbers with some function originated from the Fourier transform of a binary correlator. The goal of our study is to reveal conditions under which one can construct binary sequences with a given pair correlator. Our results can be used in the construction of superlattices and waveguides with selective transport properties.Comment: 14 pages, 7 figure

Method for Generating Long-Range Correlations for Large Systems

We propose a new method to generate a sequence of random numbers with long-range power-law correlations that overcomes known difficulties associated with large systems. The new method presents an improvement on the commonly-used methods. We apply the algorithm to generate enhanced diffusion, isotropic and anisotropic self-affine surfaces, and isotropic and anisotropic correlated percolation.Comment: 4 pages, REVTEX, figures available upon request from [email protected]

Retrieval of 3D polygonal objects based on multiresolution signatures

In this paper we present a method for retrieving 3D polygonal objects by using two sets of multiresolution signatures. Both sets are based on the progressive elimination of object's details by iterative processing of the 3D meshes. The first set, with five parameters, is based on mesh smoothing. This mainly affects an object's surface. The second set, with three parameters, is based on difference volumes after successive mesh erosions and dilations. Characteristic feature vectors are constructed by combining the features at three mesh resolutions of each object. In addition to being invariant to mesh resolution, the feature vectors are invariant to translation, rotation and size of the objects. The method was tested on a set of 40 complex objects with mesh resolutions different from those used in constructing the feature vectors. By using all eight features, the average ranking rate obtained was 1.075: 37 objects were ranked first and only 3 objects were ranked second. Additional tests were carried out to determine the significance of individual features and all combinations. The same ranking rate of 1.075 can be obtained by using some combinations of only three features. © 2011 Springer-Verlag

Experiments on joint source-channel fractal image coding with unequal error protection

We propose a joint source-channel coding system for fractal image compression. We allocate the available total bit rate between the source code and a range of error-correcting codes using a Lagrange multiplier optimization technique. The principle of the proposed unequal error protection strategy is to partition the information bits into sensitivity classes and to assign one code from a range of error-correcting codes to each sensitivity class in a nearly optimal way. Experimental results show that joint source-channel coding with fractal image compression is feasible, leads to ef"cient protection strategies, and outperforms previous works in this "eld that only covered channel coding with a "xed source rate

The management of the painful bipartite patella: a systematic review

Purpose: This study aimed to identify the most effective method for the treatment of the symptomatic bipartite patella. Methods: A systematic review of the literature was completed, and all studies assessing the management of a bipartite patella were included. Owing to the paucity of randomised controlled trials, a narrative review of 22 studies was completed. A range of treatments were assessed: conservative measures, open and arthroscopic fixation or excision and soft tissue release and excision. Results: All of the methods provided results ranging from good to excellent, with acceptable complication rates. Conclusions: This is a poorly answered treatment question. No firm guidance can be given as to the most appropriate method of treating the symptomatic bipartite patella. This study suggests that there are a number of effective treatments with acceptable complication rates and it may be that treatments that conserve the patella are more appropriate for larger fragments

Wormholing in anisotropic media: Pore-scale effect on large-scale patterns

4811Środki finansowe, o których mowa w art. 365 pkt. 2 ustaw

Parameter Estimation Error Dependency on the Acquisition Protocol in Diffusion Kurtosis Imaging

Mono-exponential kurtosis model is routinely fitted on diffusion weighted, magnetic resonance imaging data to describe non-Gaussian diffusion. Here, the purpose was to optimize acquisitions for this model to minimize the errors in estimating diffusion coefficient and kurtosis. Similar to a previous study, covariance matrix calculations were used, and coefficients of variation in estimating each parameter of this model were calculated. The acquisition parameter, b values, varied in discrete grids to find the optimum ones that minimize the coefficient of variation in estimating the two non-Gaussian parameters. Also, the effect of variation of the target values on the optimized values was investigated. Additionally, the results were benchmarked with Monte Carlo noise simulations. Simple correlations were found between the optimized b values and target values of diffusion and kurtosis. For small target values of the two parameters, there is higher chance of having significant errors; this is caused by maximum b value limits imposed by the scanner than the mathematical bounds. The results here, cover a wide range of parameters D and K so that they could be used in many directionally averaged diffusion weighted cases such as head and neck, prostate, etc