Trends in mortality from pulmonary tuberculosis before and after antibiotics in the Portuguese sanatorium Carlos Vasconcelos Porto (1918-1991): archival evidence and its paleopathological relevance

The comparative study of patients’ profiles and outcomes from pulmonary tuberculosis (TB), before and after the discovery of antibiotic therapy, using sanatoria archives is an unexplored approach in paleopathology. Although higher mortality rates are assumed before chemotherapy, scarce information exists regarding the disease’s duration in institutionalized patients and to what extent tuberculous sufferers lived enough to develop skeletal lesions. To fill this gap, 315 clinical files from the former male Sanatorium Carlos Vasconcelos Porto, located in São Brás de Alportel, Portugal, were studied. Two periods of hospitalization were considered: 1931-1944 (n=128, Group 1) and 1955-1961 (n=187, Group 2). The average duration of hospitalization (350.3 days for Group 1 and 371.8 for Group 2) and the crude mortality (18.2% and 11.2%, respectively in Groups 1 and 2) did not differ significantly between groups. However, Cox’s regression revealed significant differences between survival curves, after adjusting for age at admission (14-74 years old), with pre-chemotherapy patients presenting a higher risk of dying during hospitalization (p=0.37, hazard ratio=1.94, IC95%=1.03-3.63). This study also confirms poorer prognoses for pulmonary tuberculosis sufferers hospitalized in sanatoria before antibiotics and reveals that a significant number of patients survived enough time to develop bone lesions

A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)

The European sardine (Sardina pilchardus Walbaum, 1792) is culturally and economically important throughout its distribution. Monitoring studies of sardine populations report an alarming decrease in stocks due to overfishing and environmental change, which has resulted in historically low captures along the Iberian Atlantic coast. Important biological and ecological features such as population diversity, structure, and migratory patterns can be addressed with the development and use of genomics resources.Agência financiadora Portuguese national funds from FCT-Foundation for Science and Technology: UID/Multi/04326/2016; European Regional Development Fund (FEDER): 22153-01/SAICT/2016; ALG-01-0145-FEDER-022121; ALG-01-0145-FEDER-022231; MAR2020 operational programme of the European Maritime and Fisheries Fund (project SARDI-NOMICS): MAR-01.04.02-FEAMP-0024; European Union's Horizon 2020 research and innovation programme: 654008info:eu-repo/semantics/publishedVersio

The potential of spectral unmixing method applied to PRISMA hyperspectral images in the identification of Li minerals: an evaluation for prospecting purposes

Different remote sensing methods already applied have proven efficient in identifying pegmatites, but the high number of the false positives and the size of the study areas involved, make the location of new points of interest for exploration a difficult task. In order to develop and evaluate more autonomous tools for localization of new points of interest, this study aims to apply the Envi Spectral Hourglass Wizard (SHW) algorithm and spectral analysis, both applied on PRISMA hyperspectral images, to determine mineral distribution in St. Austell greisen deposit, a Li exploration target located at Cornwall, UK. The SHW finds endmembers within the dataset to map their location and sub-pixel abundance. This processing workflow is composed of several steps: (i) MNF (Minimum Noise Fraction) Transform; (ii) PPI (Pixel Purity Index); (iii) n-D space visualizer, allowing the extraction of the endmembers and; (iv) the SAM (Spectral Angle Mapper) classification algorithm, which classifies the image creating a class for each collected endmember. The classification results show the potential of the method to indicate the presence of Li minerals being able to identify Kaolinite and map the distribution and abundance of Topaz, Tourmaline and Biotite. This approach is highly valuable for the Li mining industry

ASSESSING THE PRISMA POTENTIAL FOR MINERAL EXPLORATION TO VECTOR LOW-GRADE LITHIUM DEPOSITS

PRISMA data is still underexploited in what concerns mineral exploration, while the high demand for battery components such as lithium (Li) instigates exploration of other low-grade deposits such as St. Austell (Cornwall, UK). This study assesses the potential of PRISMA data to target such Li deposits through the detection of topaz as a proxy to the mineralization using band math and partial unmixing techniques. The topaz distribution maps obtained are coherent between each other and with the known geology of the area, highlighting the PRISMA potential, although there could be some shortcomings related to its spatial resolution. Comparison with Sentinel-2 or Worldview-3 data shows the limitations of multispectral products, despite some potential to use Worldview-3 that need to be further investigated. In the future, new approaches to directly detect Li-micas and field validation of the results must be conducted

Novel and simple test plating for screening relative transfructosylation activity of fungi

Fructooligosaccharides (FOS) have received particular attention recently because of their excellent biological and functional properties, namely, as prebiotic compounds that promote the growth of intestinal microflora. They are also low calorie non-carcinogenic sweeteners with numerous suggested health benefits. These include immune system activation, resistance to infections, synthesis of Bcomplex vitamins, calcium absorption. They can be used as a treatment for breast cancer, diarrhoea, and constipation. Although FOS are present in trace amounts in fruits, vegetables and honey as natural products, its mass production is limited by seasonal restrictions and the inherent inefficiencies of these systems. Hence, microbial FOS production by fungi in bioreactors is more realistic. Several microorganisms are reported to have transfructosylation activity due to fructosyltransferase (EC 2.4.1.9) and/or fructofuranosidase (EC 3.2.1.26) activities. However, the search for other fungi with higher transfructosylation activity is still a challenge. So, a presumptive and indirect colorimetric plate assay for the evaluation of transfructosylation activity in fungi was developed by the simultaneous determination in the same plate of glucose and fructose released from sucrose. The method entailed the coupling of two dye systems, namely the glucose oxidase-peroxidase coupled reaction using phenol and 4-aminoantipyrine for determination of glucose; and the fructose dehydrogenase oxidation in the presence of a tetrazolium salt for determination of fructose. In order to have a standard assay, the fungi were grown on Czapek Dox (CD) agar. 1 disc of mycelium (8 mm diameter) was cut from the edge of each colony and then put in contact with CD agar plates. After incubation at 25 ºC for 72 h each assay plate was overlaid with soft agar containing the reagents. The presence of enzymes with transfructosylation activity was identified by the formation of pink (presence of glucose) and blue (presence of fructose) halos around the discs. In conclusion, the results showed that the method is suitable for screening a large number of fungi due to its simplicity, reproducibility and rapidity.Agência de Inovação (AdI) - project BIOLIFE ref. PRIME 03/347

Caregivers’ perceived emotional and feeding responsiveness toward preschool children: Associations and paths of influence

Although there is a large body of research connecting emotion to eating behaviors, little is known about the role of caregivers’ responses to children’s emotions in the context of child feeding. The purpose of this study was to analyze the relation between caregivers’ emotional responsiveness and feeding responsiveness. The mothers of 137 children between 2 and 6 years of age reported on their responses to children’s negative emotions using the Coping with Children’s Negative Emotions Scale and on their feeding practices using the Comprehensive Feeding Practices Questionnaire. The results showed that mothers’ supportive emotion responses (e.g., problem-focused, emotion-focused, and expressive encouragement reactions) tend to be positively associated with responsive feeding practices (e.g., encouraging, modelling, and teaching healthy food-related behaviors). Instead, mothers’ unsupportive responses (e.g., distress, punitive and minimization reactions) tend to be positively associated with nonresponsive feeding practices (e.g., food as reward or to regulate emotions, and pressure to eat) and negatively associated with responsive feeding practices. Our results suggest that emotional and feeding responsiveness may be intertwined and that differences in parent’s emotional responsiveness may translate into differences in their feeding styles, setting the stage for parents’ use of positive vs. negative feeding practices.Fundação para a Ciência e Tecnologia - FCTinfo:eu-repo/semantics/publishedVersio

THE MOLECULAR MECHANISMS OF IRON AND FERRITIN METABOLISM IN NORMAL AND NEOPLASTIC CELLS

Iron (Fe) is essential for cell growth and replication as many Fe-containing proteins catalyse key reactions involved in energy metabolism (cytochromes, mitochondrial aconitase and Fe-S proteins of the electron transport chain), respiration (hemoglobin and myoglobin) and DNA synthesis (ribonucleotide reductase). If not appropriately shielded, Fe could participate in one-electron transfer reactions that lead to the production of extremely toxic free radicals. The Fe storage protein, ferritin, is essential to protect cells against Fe-mediated oxidative stress by accommodating excess Fe into its protein shell (Xu et al., 2005). However, despite intensive research over the last few decades, many questions relating to intracellular Fe metabolism, e.g. Fe release from ferritin remain unanswered. Therefore, it is important to elucidate the molecular mechanisms of Fe trafficking in cells. At the beginning of my candidature, little was understood regarding the effect of anti-cancer agents, anthracyclines on the Fe-regulated genes, including transferrin receptor-1 (TfR1), N-myc downstream-regulated gene-1 (Ndrg1) and ferritin. Furthermore, the mechanisms of ferritin-Fe release and anthracycline-mediated ferritin-Fe accumulation are unclear. The work presented in Chapters 3 and 4 has addressed these issues. Apart from the studies examining the molecular interactions of anthracyclines with Fe, a mouse model with perturbed Fe metabolism was used and the marked alterations of protein expression in the heart of this knockout mouse model was discussed in Chapter 5. Chapter 3 Anthracyclines are effective anti-cancer agents. However, their use is limited by cardiotoxicity, an effect linked to their ability to chelate iron (Fe) and perturb Fe metabolism (Xu et al., 2005). These effects on Fe-trafficking remain poorly understood, but are important to decipher as treatment for anthracycline cardiotoxicity utilises the chelator, dexrazoxane. Incubation of cells with doxorubicin (DOX) up-regulated mRNA levels of the Fe-regulated genes, transferrin receptor-1 (TfR1) and N-myc downstream-regulated gene-1 (Ndrg1). This effect was mediated by Fe-depletion, as it was reversed by adding Fe and was prevented by saturating the anthracycline metal-binding site with Fe. However, DOX did not act like a typical chelator, as it did not induce cellular Fe mobilisation. In the presence of DOX and 59Fe-transferrin, Fe-trafficking studies demonstrated ferritin-59Fe accumulation and decreased cytosolic-59Fe incorporation. This could induce cytosolic Fe-deficiency and increase TfR1 and Ndrg1 mRNA. Up-regulation of TfR1 and Ndrg1 by DOX was independent of anthracycline-mediated radical generation and occurred via HIF-1α-independent mechanisms. Despite increased TfR1 and Ndrg1 mRNA after DOX treatment, this agent decreased TfR1 and Ndrg1 protein expression. Hence, the effects of DOX on Fe metabolism were complex due to its multiple effector mechanisms. Chapter 4 The Fe storage protein, ferritin, can accommodate up to 4500 atoms of Fe in its protein shell (Harrison and Arosio, 1996). However, the underlying mechanism of ferritin-Fe release remains unknown. Previous studies demonstrated that anti-cancer agents, anthracyclines, led to ferritin-59Fe accumulation (Kwok and Richardson, 2003). The increase in ferritin-59Fe was shown to be due to a decrease in the release of Fe from this protein. It could be speculated that DOX may impair the Fe release pathway by preventing the synthesis of essential ferritin partner proteins that induce Fe release. In this study, a native protein purification technique has been utilised to isolate ferritin-associated partners by combining ultra-centrifugation, anion-exchange chromatography, size exclusion chromatography and native gel electrophoresis. In addition to cells in culture (namely, SK-Mel-28 melanoma cells), liver taken from the mouse was used as a physiological in vivo model, as this organ is a major source of ferritin. Four potential partner proteins were identified along with ferritin, e.g. aldehyde dehydrogenase 1 family, member L1 (ALDH1L1). Future studies are required to clarify the relationship of these proteins with cellular Fe metabolism and ferritin-Fe release. Chapter 5 A frequent cause of death in Friedreich’s ataxia patients is cardiomyopathy, but the molecular alterations underlying this condition are unknown. We performed two dimensional electrophoresis to characterise the changes in protein expression of hearts using the muscle creatine kinase frataxin conditional knockout (KO) mouse. Pronounced changes in the protein expression profile were observed in 9-week-old KO mice with severe cardiomyopathy. In contrast, only a few proteins showed altered expression in asymptomatic 4-week-old KO mice. In hearts from frataxin KO mice, components of the iron-dependent complex-I and -II of the mitochondrial electron transport chain and enzymes involved in ATP homeostasis (creatine kinase, adenylate kinase) displayed decreased expression. Interestingly, the KO hearts exhibited increased expression of enzymes involved in the citric acid cycle, catabolism of branched-chain amino acids, ketone body utilisation and pyruvate decarboxylation. This constitutes evidence of metabolic compensation due to decreased expression of electron transport proteins. There was also pronounced up-regulation of proteins involved in stress protection, such as a variety of chaperones, as well as altered expression of proteins involved in cellular structure, motility and general metabolism. This is the first report of the molecular changes at the protein level which could be involved in the cardiomyopathy of the frataxin KO mouse

Publication trends in global biodiversity research on protected areas

One of the main strategies to reduce the global loss of biodiversity has been the establishment of protected areas (PAs). High quality biodiversity knowledge is essential to successfully design PAs and PA networks, and to assess their conservation effectiveness. However, biodiversity knowledge is taxonomically and geographically biased. Even though PAs are typically more intensively surveyed than surrounding landscapes, they cannot avoid biodiversity knowledge shortfalls and biases. To investigate this, we performed a systematic literature review to assess publication trends in global biodiversity research taking place in PAs. Our data indicate that animals are more studied than plants, with vertebrates overrepresented in relation to invertebrates. Biodiversity in PAs has been mainly measured taxonomically (species richness or species diversity), while functional and phylogenetic diversity have rarely been considered. Finally, as predicted, there was a geographic bias towards European and USA terrestrial protected areas. These observed trends mirror more general studies of biodiversity knowledge shortfalls and could have direct negative consequences for conservation policy and practice. Reducing these biases and shortfalls is essential for more effective use of limited conservation resourcesSLC was supported by a FPI predoctoral grant financed by the Autonoma ´ University of Madrid. RJL was supported via the European Union’s Horizon 2020 research and innovation programme under grant agreement No 854248. AMCS was supported by the Ramon ´ y Cajal program (RYC2020-029407-I), financed by the Spanish Ministerio de Ciencia e Innovacio

Estudo de necessidades de cuidados de pessoas com 65 e mais anos de idade, proposta de intervenção dos cuidados de enfermagem de reabilitação

Descrever necessidades de cuidados de pessoas com 65 e mais anos de idade ao nível dos cuidados de enfermagem de reabilitação

Perceived cognitive functioning in breast cancer patients treated with chemotherapy compared to matched healthy women: evidence from a Portuguese study

Aim: Cognitive concerns are one of the most frequently reported symptoms by breast cancer survivors. This study aimed to evaluate perceived cognitive functioning in Portuguese women with breast cancer treated with chemotherapy. Methods: A cross-sectional study enrolling 146 women (73 with breast cancer and 73 healthy) was conducted from August to October 2017, invited to participate through online dissemination. Participants completed self-reported questionnaires to collect sociodemographic and clinical data and assess perceived cognitive functioning and psychological adjustment variables (anxiety and depression). Results: Compared to healthy women, women with breast cancer showed significantly lower scores on the Functional Assessment of Cancer Therapy-Cognitive Function (FACT-Cog) subscales and higher levels of depression. Both groups showed significant negative correlations between perceived cognitive functioning and anxiety and depression. Health status and depression seem to better explain perceived cognitive functioning, with health status adding significantly more explained variance beyond sociodemographic and psychological adjustment variables. Conclusion: The current findings provide evidence for the existence of more cognitive complaints among Portuguese women with breast cancer, compared to healthy individuals. Anxiety, depression, age and education also explain perceived cognitive functioning. Considering that health status and psychological adjustment seem to significantly explain perceived cognitive functioning, special attention should be given by health-care professionals, including nurses, to designing clinical interventions for breast cancer patients to help manage cognitive impairment.Foundation for Science and Technology SFRH/BD/138785/2018.info:eu-repo/semantics/publishedVersio