2,792 research outputs found
Background risk of breast cancer and the association between physical activity and mammographic density
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Incremental dimension reduction of tensors with random index
We present an incremental, scalable and efficient dimension reduction
technique for tensors that is based on sparse random linear coding. Data is
stored in a compactified representation with fixed size, which makes memory
requirements low and predictable. Component encoding and decoding are performed
on-line without computationally expensive re-analysis of the data set. The
range of tensor indices can be extended dynamically without modifying the
component representation. This idea originates from a mathematical model of
semantic memory and a method known as random indexing in natural language
processing. We generalize the random-indexing algorithm to tensors and present
signal-to-noise-ratio simulations for representations of vectors and matrices.
We present also a mathematical analysis of the approximate orthogonality of
high-dimensional ternary vectors, which is a property that underpins this and
other similar random-coding approaches to dimension reduction. To further
demonstrate the properties of random indexing we present results of a synonym
identification task. The method presented here has some similarities with
random projection and Tucker decomposition, but it performs well at high
dimensionality only (n>10^3). Random indexing is useful for a range of complex
practical problems, e.g., in natural language processing, data mining, pattern
recognition, event detection, graph searching and search engines. Prototype
software is provided. It supports encoding and decoding of tensors of order >=
1 in a unified framework, i.e., vectors, matrices and higher order tensors.Comment: 36 pages, 9 figure
Cooperative secretions facilitate host range expansion in bacteria
The majority of emergent human pathogens are zoonotic in origin, that is, they can transmit to humans from other animals. Understanding the factors underlying the evolution of pathogen host range is therefore of critical importance in protecting human health. There are two main evolutionary routes to generalism: organisms can tolerate multiple environments or they can modify their environments to forms to which they are adapted. Here we use a combination of theory and a phylogenetic comparative analysis of 191 pathogenic bacterial species to show that bacteria use cooperative secretions that modify their environment to extend their host range and infect multiple host species. Our results suggest that cooperative secretions are key determinants of host range in bacteria, and that monitoring for the acquisition of secreted proteins by horizontal gene transfer can help predict emerging zoonoses
A Minimal Threshold of c-di-GMP Is Essential for Fruiting Body Formation and Sporulation in Myxococcus xanthus
Generally, the second messenger bis-(3’-5’)-cyclic dimeric GMP (c-di-GMP) regulates the switch between motile and sessile lifestyles in bacteria. Here, we show that c-di-GMP is an essential regulator of multicellular development in the social bacterium Myxococcus xanthus. In response to starvation, M. xanthus initiates a developmental program that culminates in formation of spore-filled fruiting bodies. We show that c-di-GMP accumulates at elevated levels during development and that this increase is essential for completion of development whereas excess c-di-GMP does not interfere with development. MXAN3735 (renamed DmxB) is identified as a diguanylate cyclase that only functions during development and is responsible for this increased c-di-GMP accumulation. DmxB synthesis is induced in response to starvation, thereby restricting DmxB activity to development. DmxB is essential for development and functions downstream of the Dif chemosensory system to stimulate exopolysaccharide accumulation by inducing transcription of a subset of the genes encoding proteins involved in exopolysaccharide synthesis. The developmental defects in the dmxB mutant are non-cell autonomous and rescued by co-development with a strain proficient in exopolysaccharide synthesis, suggesting reduced exopolysaccharide accumulation as the causative defect in this mutant. The NtrC-like transcriptional regulator EpsI/Nla24, which is required for exopolysaccharide accumulation, is identified as a c-diGMP receptor, and thus a putative target for DmxB generated c-di-GMP. Because DmxB can be—at least partially—functionally replaced by a heterologous diguanylate cyclase, these results altogether suggest a model in which a minimum threshold level of c-di-GMP is essential for the successful completion of multicellular development in M. xanthus
Thermodynamics of deformed AdS model with a positive/negative quadratic correction in graviton-dilaton system
By solving the Einstein equations of the graviton coupling with a real scalar
dilaton field, we establish a general framework to self-consistently solve the
geometric background with black-hole for any given phenomenological holographic
models. In this framwork, we solve the black-hole background, the corresponding
dilaon field and the dilaton potential for the deformed AdS model with a
positive/negative quadratic correction. We systematically investigate the
thermodynamical properties of the deformed AdS model with a positive and
negative quadratic correction, respectively, and compare with lattice QCD on
the results of the equation of state, the heavy quark potential, the Polyakov
loop and the spatial Wilson loop. We find that the bulk thermodynamical
properties are not sensitive to the sign of the quadratic correction, and the
results of both deformed holographic QCD models agree well with lattice QCD
result for pure SU(3) gauge theory. However, the results from loop operators
favor a positive quadratic correction, which agree well with lattice QCD
result. Especially, the result from the Polyakov loop excludes the model with a
negative quadratic correction in the warp factor of .Comment: 26 figures,36 pages,V.3: an appendix,more equations and references
added,figures corrected,published versio
Three-loop HTL gluon thermodynamics at intermediate coupling
We calculate the thermodynamic functions of pure-glue QCD to three-loop order
using the hard-thermal-loop perturbation theory (HTLpt) reorganization of
finite temperature quantum field theory. We show that at three-loop order
hard-thermal-loop perturbation theory is compatible with lattice results for
the pressure, energy density, and entropy down to temperatures .
Our results suggest that HTLpt provides a systematic framework that can used to
calculate static and dynamic quantities for temperatures relevant at LHC.Comment: 24 pages, 13 figs. 2nd version: improved discussion and fixing typos.
Published in JHE
The Bulk Channel in Thermal Gauge Theories
We investigate the thermal correlator of the trace of the energy-momentum
tensor in the SU(3) Yang-Mills theory. Our goal is to constrain the spectral
function in that channel, whose low-frequency part determines the bulk
viscosity. We focus on the thermal modification of the spectral function,
. Using the operator-product expansion we give
the high-frequency behavior of this difference in terms of thermodynamic
potentials. We take into account the presence of an exact delta function
located at the origin, which had been missed in previous analyses. We then
combine the bulk sum rule and a Monte-Carlo evaluation of the Euclidean
correlator to determine the intervals of frequency where the spectral density
is enhanced or depleted by thermal effects. We find evidence that the thermal
spectral density is non-zero for frequencies below the scalar glueball mass
and is significantly depleted for .Comment: (1+25) pages, 6 figure
Axion-like-particle search with high-intensity lasers
We study ALP-photon-conversion within strong inhomogeneous electromagnetic
fields as provided by contemporary high-intensity laser systems. We observe
that probe photons traversing the focal spot of a superposition of Gaussian
beams of a single high-intensity laser at fundamental and frequency-doubled
mode can experience a frequency shift due to their intermittent propagation as
axion-like-particles. This process is strongly peaked for resonant masses on
the order of the involved laser frequencies. Purely laser-based experiments in
optical setups are sensitive to ALPs in the mass range and can
thus complement ALP searches at dipole magnets.Comment: 25 pages, 2 figure
Thermodynamics of SU(N) Yang-Mills theories in 2+1 dimensions II - The deconfined phase
We present a non-perturbative study of the equation of state in the
deconfined phase of Yang-Mills theories in D=2+1 dimensions. We introduce a
holographic model, based on the improved holographic QCD model, from which we
derive a non-trivial relation between the order of the deconfinement phase
transition and the behavior of the trace of the energy-momentum tensor as a
function of the temperature T. We compare the theoretical predictions of this
holographic model with a new set of high-precision numerical results from
lattice simulations of SU(N) theories with N=2, 3, 4, 5 and 6 colors. The
latter reveal that, similarly to the D=3+1 case, the bulk equilibrium
thermodynamic quantities (pressure, trace of the energy-momentum tensor, energy
density and entropy density) exhibit nearly perfect proportionality to the
number of gluons, and can be successfully compared with the holographic
predictions in a broad range of temperatures. Finally, we also show that, again
similarly to the D=3+1 case, the trace of the energy-momentum tensor appears to
be proportional to T^2 in a wide temperature range, starting from approximately
1.2 T_c, where T_c denotes the critical deconfinement temperature.Comment: 2+36 pages, 10 figures; v2: comments added, curves showing the
holographic predictions included in the plots of the pressure and energy and
entropy densities, typos corrected: version published in JHE
Sex steroids, growth factors and mammographic density: a cross-sectional study of UK postmenopausal Caucasian and Afro-Caribbean women
INTRODUCTION: Sex steroids, insulin-like growth factors (IGFs) and prolactin are breast cancer risk factors but whether their effects are mediated through mammographic density, one of the strongest risk factors for breast cancer, is unknown. If such a hormonal basis of mammographic density exists, hormones may underlie ethnic differences in both mammographic density and breast cancer incidence rates. METHODS: In a cross-sectional study of 270 postmenopausal Caucasian and Afro-Caribbean women attending a population-based breast screening service in London, UK, we investigated whether plasma biomarkers (oestradiol, oestrone, sex hormone binding globulin (SHBG), testosterone, prolactin, leptin, IGF-I, IGF-II and IGF binding protein 3 (IGFBP3)) were related to and explained ethnic differences in mammographic percent density, dense area and nondense area, measured in Cumulus using the threshold method. RESULTS: Mean levels of oestrogens, leptin and IGF-I:IGFBP3 were higher whereas SHBG and IGF-II:IGFBP3 were lower in Afro-Caribbean women compared with Caucasian women after adjustment for higher mean body mass index (BMI) in the former group (by 3.2 kg/m(2) (95% confidence interval (CI): 1.8, 4.5)). Age-adjusted percent density was lower in Afro-Caribbean compared with Caucasian women by 5.4% (absolute difference), but was attenuated to 2.5% (95% CI: -0.2, 5.1) upon BMI adjustment. Despite ethnic differences in biomarkers and in percent density, strong ethnic-age-adjusted inverse associations of oestradiol, leptin and testosterone with percent density were completely attenuated upon adjustment for BMI. There were no associations of IGF-I, IGF-II or IGFBP3 with percent density or dense area. We found weak evidence that a twofold increase in prolactin and oestrone levels were associated, respectively, with an increase (by 1.7% (95% CI: -0.3, 3.7)) and a decrease (by 2.0% (95% CI: 0, 4.1)) in density after adjustment for BMI. CONCLUSIONS: These findings suggest that sex hormone and IGF levels are not associated with BMI-adjusted percent mammographic density in cross-sectional analyses of postmenopausal women and thus do not explain ethnic differences in density. Mammographic density may still, however, be influenced by much higher premenopausal hormone levels
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