Wind-Wave-Current Tank Research Facility usage and status

This summary is to provide information as to: (1) research activities, and (2) facilities status of the wind-wave-current tank research facility located at the GSFC/WFF. Research Activities include: (1) Wave-Turbulence Interaction; (2) Velocity Structure Below Waves; (3) Short-Wave Modification by Long-Waves; (4) Wind-Wave Generation Time Scale; (5) Wave-Current Interaction; (6) Rain Effects on Microwave Scattering from the Sea-Surface; and (7) Gas Exchange Rates versus Scatterometer Power

The Precipitation Imaging Package : Assessment of Microphysical and Bulk Characteristics of Snow

Remote-sensing observations are needed to estimate the regional and global impacts of snow. However, to retrieve accurate estimates of snow mass and rate, these observations require augmentation through additional information and assumptions about hydrometeor properties. The Precipitation Imaging Package (PIP) provides information about precipitation characteristics and can be utilized to improve estimates of snowfall rate and accumulation. Here, the goal is to demonstrate the quality and utility of two higher-order PIP-derived products: liquid water equivalent snow rate and an approximation of volume-weighted density called equivalent density. Accuracy of the PIP snow rate and equivalent density is obtained through intercomparison with established retrieval methods and through evaluation with colocated ground-based observations. The results confirm the ability of the PIP-derived products to quantify properties of snow rate and equivalent density, and demonstrate that the PIP produces physically realistic snow characteristics. When compared to the National Weather Service (NWS) snow field measurements of six-hourly accumulation, the PIP-derived accumulations were biased only +2.48% higher. Additionally, this work illustrates fundamentally different microphysical and bulk features of low and high snow-to-liquid ratio events, through assessment of observed particle size distributions, retrieved mass coefficients, and bulk properties. Importantly, this research establishes the role that PIP observations and higher-order products can serve for constraining microphysical assumptions in ground-based and spaceborne remotely sensed snowfall retrievals.Peer reviewe

National Athletic Trainers\u27 Association Position Statement: Evaluation, Management, and Outcomes of and Return-to-Play Criteria for Overhead Athletes With Superior Labral Anterior-Posterior Injuries

Objective: To present recommendations for the diagnosis, management, outcomes, and return to play of athletes with superior labral anterior-posterior (SLAP) injuries. Background: In overhead athletes, SLAP tears are common as either acute or chronic injuries. The clinical guidelines presented here were developed based on a systematic review of the current evidence and the consensus of the writing panel. Clinicians can use these guidelines to inform decision making regarding the diagnosis, acute and long-term conservative and surgical treatment, and expected outcomes of and return-to-play guidelines for athletes with SLAP injuries. Recommendations: Physical examination tests may aid diagnosis; 6 tests are recommended for confirming and 1 test is recommended for ruling out a SLAP lesion. Combinations of tests may be helpful to diagnose SLAP lesions. Clinical trials directly comparing outcomes between surgical and nonoperative management are absent; however, in cohort trials, the reports of function and return-to-sport outcomes are similar for each management approach. Nonoperative management that includes rehabilitation, nonsteroidal anti-inflammatory drugs, and corticosteroid injections is recommended as the first line of treatment. Rehabilitation should address deficits in shoulder internal rotation, total arc of motion, and horizontal-adduction motion, as well as periscapular and glenohumeral muscle strength, endurance, and neuromuscular control. Most researchers have examined the outcomes of surgical management and found high levels of satisfaction and return of shoulder function, but the ability to return to sport varied widely, with 20% to 94% of patients returning to their sport after surgical or nonoperative management. On average, 55% of athletes returned to full participation in prior sports, but overhead athletes had a lower average return of 45%. Additional work is needed to define the criteria for diagnosing and guiding clinical decision making to optimize outcomes and return to play

Circular Permutation in Proteins

This is a ‘‘Topic Page’ ’ article for PLoS Computational Biology. Circular permutation describes a type of relationship between proteins, whereby the proteins have a changed order of amino acids in their protein sequence, such that the sequence of the first portion of one protein (adjacent to the N-terminus) is related to that of the second portion of the other protein (near its C-terminus), and vice versa (see Figure 1). This is directly analogous to the mathematical notion of a cyclic permutation over the set of residues in a protein. Circular permutation can be the result of evolutionary events, post-translational modifications, or artificially engineered mutations. The result is a protein structure with different connectivity, but overall similar three-dimensional (3D) shape. The homology between portions of the proteins can be established by observing similar sequences between N- and C-terminal portions of the tw

Determining crystal structures through crowdsourcing and coursework

We show here that computer game players can build high-quality crystal structures. Introduction of a new feature into the computer game Foldit allows players to build and real-space refine structures into electron density maps. To assess the usefulness of this feature, we held a crystallographic model-building competition between trained crystallographers, undergraduate students, Foldit players and automatic model-building algorithms. After removal of disordered residues, a team of Foldit players achieved the most accurate structure. Analysing the target protein of the competition, YPL067C, uncovered a new family of histidine triad proteins apparently involved in the prevention of amyloid toxicity. From this study, we conclude that crystallographers can utilize crowdsourcing to interpret electron density information and to produce structure solutions of the highest quality

Detection of circular permutations within protein structures using CE-CP

Motivation: Circular permutation is an important type of protein rearrangement. Natural circular permutations have implications for protein function, stability, and evolution. Artificial circular permutations have also been used for protein studies. However, such relationships are difficult to detect for many sequence and structure comparison algorithms and require special consideration. Results: We developed a new algorithm, called Combinatorial Exten-sion for Circular Permutations (CE-CP), which allows the structural comparison of circularly permuted proteins. CE-CP was designed to be user friendly and is integrated into the RCSB Protein Data Bank. It was tested on two collections of circularly permuted proteins. Pai-rwise alignments can be visualized both in a desktop application or on the web using Jmol and exported to other programs in a variety of formats. Availability: The CE-CP algorithm can be accessed through the RCSB website a

Molql : towards a common general purpose molecular query language

Advances in experimental techniques are providing access to ever more complex and larger macromolecular data sets. Definition and extraction of substructures represents a crucial step required for both analysis and visualization of these data. A common language for defining macromolecular substructures would streamline this step, and enable communication among different computational and visualization tools. However, software tools usually define their own query language or support a language that is not sufficiently general to describe complex spatial and other relationships within macromolecular structures. Herein, we introduce the Molecular Query Language (MolQL), a declarative language for describing substructures within molecular data. The design of the language has three main goals: 1) Make it easy for tool developers to implement the specification; 2) Be expressive enough to describe a wide range of molecular substructures; and 3) Be readily extensible. We describe the initial specification of the language, and provide its reference implementation that can execute MolQL expressions on any Protein Data Bank archival entry (pdb.org) and immediately show the result in a web browser. Moreover, we demonstrate the versatility of the language by translating Jmol, PyMOL, and VMD selection expressions into MolQL. Find out more about MolQL and try it online at http://molql.org/