7,769 research outputs found

    Kritisi Desain Pseudo Elastis Pada Bangunan Beraturan 6- Dan 10- Lantai Dengan Denah Persegi Di Wilayah 6 Peta Gempa Indonesia

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    Pseudo Elastis adalah metode alternatif yang dikembangkan dalam perencanaan bangunan terhadap gempa dengan menggunakan pola keruntuhan Partial Side Sway Mechanism. Beberapa kolom didesain dengan suatu faktor pengali (FP) sebagai pembesar gaya untuk menjaga agar kolom tetap elastis selama terkena beban gempa, sedangkan kolom lainnya dan balok diijinkan mengalami sendi plastis. Metode ini tidak lagi berdasarkan desain kapasitas seperti pada umumnya, melainkan berdasarkan beban kombinasi yang bekerja. Tujuan dari penelitian ini adalah mengkritisi apakah asumsi pada konsep Pseudo Elastis mengenai distribusi gaya geser pada kolom interior ke kolom eksterior sudah benar dan bangunan memenuhi pola keruntuhan Partial Side Sway Mechanism. Bangunan yang diteliti adalah bangunan beraturan berbentuk persegi, 6- dan 10-lantai di wilayah 6 peta gempa Indonesia. Tulangan balok direncanakan sedekat mungkin dengan perhitungan teoritis. Distribusi gaya geser dan kinerja bangunan diuji dengan analisis Time History Nonlinear menggunakan program SAP2000v.11. Hasil penelitian menunjukkan bahwa distribusi gaya geser pada kolom interior tidak tersalurkan ke kolom eksterior dan pola keruntuhan Partial Side Sway Mechanism masih belum tercapai

    A method for sensitivity analysis to assess the effects of measurement error in multiple exposure variables using external validation data

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    Measurement error in self-reported dietary intakes is known to bias the association between dietary intake and a health outcome of interest such as risk of a disease. The association can be distorted further by mismeasured confounders, leading to invalid results and conclusions. It is, however, difficult to adjust for the bias in the association when there is no internal validation data

    Sampling constrained probability distributions using Spherical Augmentation

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    Statistical models with constrained probability distributions are abundant in machine learning. Some examples include regression models with norm constraints (e.g., Lasso), probit, many copula models, and latent Dirichlet allocation (LDA). Bayesian inference involving probability distributions confined to constrained domains could be quite challenging for commonly used sampling algorithms. In this paper, we propose a novel augmentation technique that handles a wide range of constraints by mapping the constrained domain to a sphere in the augmented space. By moving freely on the surface of this sphere, sampling algorithms handle constraints implicitly and generate proposals that remain within boundaries when mapped back to the original space. Our proposed method, called {Spherical Augmentation}, provides a mathematically natural and computationally efficient framework for sampling from constrained probability distributions. We show the advantages of our method over state-of-the-art sampling algorithms, such as exact Hamiltonian Monte Carlo, using several examples including truncated Gaussian distributions, Bayesian Lasso, Bayesian bridge regression, reconstruction of quantized stationary Gaussian process, and LDA for topic modeling.Comment: 41 pages, 13 figure

    A family of thermostable fungal cellulases created by structure-guided recombination

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    SCHEMA structure-guided recombination of 3 fungal class II cellobiohydrolases (CBH II cellulases) has yielded a collection of highly thermostable CBH II chimeras. Twenty-three of 48 genes sampled from the 6,561 possible chimeric sequences were secreted by the Saccharomyces cerevisiae heterologous host in catalytically active form. Five of these chimeras have half-lives of thermal inactivation at 63°C that are greater than the most stable parent, CBH II enzyme from the thermophilic fungus Humicola insolens, which suggests that this chimera collection contains hundreds of highly stable cellulases. Twenty-five new sequences were designed based on mathematical modeling of the thermostabilities for the first set of chimeras. Ten of these sequences were expressed in active form; all 10 retained more activity than H. insolens CBH II after incubation at 63°C. The total of 15 validated thermostable CBH II enzymes have high sequence diversity, differing from their closest natural homologs at up to 63 amino acid positions. Selected purified thermostable chimeras hydrolyzed phosphoric acid swollen cellulose at temperatures 7 to 15°C higher than the parent enzymes. These chimeras also hydrolyzed as much or more cellulose than the parent CBH II enzymes in long-time cellulose hydrolysis assays and had pH/activity profiles as broad, or broader than, the parent enzymes. Generating this group of diverse, thermostable fungal CBH II chimeras is the first step in building an inventory of stable cellulases from which optimized enzyme mixtures for biomass conversion can be formulated

    RNA secondary structure formation: a solvable model of heteropolymer folding

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    The statistical mechanics of heteropolymer structure formation is studied in the context of RNA secondary structures. A designed RNA sequence biased energetically towards a particular native structure (a hairpin) is used to study the transition between the native and molten phase of the RNA as a function of temperature. The transition is driven by a competition between the energy gained from the polymer's overlap with the native structure and the entropic gain of forming random contacts. A simplified Go-like model is proposed and solved exactly. The predicted critical behavior is verified via exact numerical enumeration of a large ensemble of similarly designed sequences.Comment: 4 pages including 2 figure

    Simple models of protein folding and of non--conventional drug design

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    While all the information required for the folding of a protein is contained in its amino acid sequence, one has not yet learned how to extract this information to predict the three--dimensional, biologically active, native conformation of a protein whose sequence is known. Using insight obtained from simple model simulations of the folding of proteins, in particular of the fact that this phenomenon is essentially controlled by conserved (native) contacts among (few) strongly interacting ("hot"), as a rule hydrophobic, amino acids, which also stabilize local elementary structures (LES, hidden, incipient secondary structures like α\alpha--helices and β\beta--sheets) formed early in the folding process and leading to the postcritical folding nucleus (i.e., the minimum set of native contacts which bring the system pass beyond the highest free--energy barrier found in the whole folding process) it is possible to work out a succesful strategy for reading the native structure of designed proteins from the knowledge of only their amino acid sequence and of the contact energies among the amino acids. Because LES have undergone millions of years of evolution to selectively dock to their complementary structures, small peptides made out of the same amino acids as the LES are expected to selectively attach to the newly expressed (unfolded) protein and inhibit its folding, or to the native (fluctuating) native conformation and denaturate it. These peptides, or their mimetic molecules, can thus be used as effective non--conventional drugs to those already existing (and directed at neutralizing the active site of enzymes), displaying the advantage of not suffering from the uprise of resistance

    On the stability of renormalizable expansions in three-dimensional gravity

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    Preliminary investigations are made for the stability of the 1/N1/N expansion in three-dimensional gravity coupled to various matter fields, which are power-counting renormalizable. For unitary matters, a tachyonic pole appears in the spin-2 part of the leading graviton propagator, which implies the unstable flat space-time, unless the higher-derivative terms are introduced. As another possibility to avoid this spin-2 tachyon, we propose Einstein gravity coupled to non-unitary matters. It turns out that a tachyon appears in the spin-0 or -1 part for any linear gauges in this case, but it can be removed if non-minimally coupled scalars are included. We suggest an interesting model which may be stable and possess an ultraviolet fixed point.Comment: 32 pages. (A further discussion to avoid tachyons is included. To be Published in Physical Review D.
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